Rh4CG140700

U5 small nuclear ribonucleoprotein 40

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0012055
Physical Location & Seq
Forward (+)
27934367 .. 27937583
3217 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG140700.1

Sequence Viewer

Length: 1236 bp
ATGGCTTCTTGCCATCATTTCTGTTTTGTCTTTCTGTTTTTTAAGCTATATCTGGCTTCTGTTAGTATTTTAGAAGCTCAGCTTGTCACAAGACACAAGTCTTATAAGCTACTACTTTGCCATTTATTTACTTCATTGCTATCGCAGGATTGGAACTCAGTAGAAAAAAAGTGTTTTCCATTCAAGCACCAAACAGAATCAATGATGCAGTTTGCTCCAAGTGAGGGTGAAAATGCTTTGTCTGTAGTTGGTCCCAGGCCAATGGATTTGTCTACATATAATGCTCGCCCTGCATCTGGGCCTAATGGAAAACAAAGGACTTCAAGTTTGGAGGCACCAATCATGCTGCTGACTGGTCATCAAAGTGCTATATACACAATGAAATTTAACCCTGCCGGAACAGTCATAGCATCGGGGTCTCATGACAAGGAAATTTTCTTATGGAATGTTCATGGGGAATGCAAAAACTTCATGGTTTTAAAGGGGCATAAGAATGCTGTGTTGGATCTTCACTGGACAACTGATGGGTCTCAGATAGTATCAGCCAGTCCAGACAAAACTGTGGGGGCATGGGATGTTGAGACGGGAAAAAGAATTAAAAAGATGGCAGAACACTCTTCATTTGTGAATTCTTGTCATCCTGCTCGGAGAGGACCGCCTCTTGTTGTCAGTGGATCTGATGATGGAACTGCCAAACTATGGGATATGCGTGTGAGGGGTGCCATCCAAACATATCCTGATAAATACCAAATCACAGCAGTCAGCTTCTCGGATGCATCAGATAAAATCTTTACAGGAGGTATTGATAATGATATTAAGGTTTGGGACTTGCGCAAGGCTGAAGTACTGATGACACTTCAAGGACATCAAGATATGATAACAGGTATGTCATTGAGTCCTGATGGCTCTTATCTTCTGACTAATGGAATGGACTGCAAACTCTGCATTTGGGATATGCGCCCGTATGCACCACAAAATCGTTGTGTAAAGATAATGGAAGGGCACCAACACAACTTTGAAAAGAACTTGTTGAAATGTAGCTGGTCACCTGATGGAAGCAAGGTCACGGCCGGCAGTTCTGATAGGATGGTCTACATATGGGATACTACTTCTCGACGCATCTTGTTTATGCTGCCGGGCCACACTGGATCTGTCAATGAGTCTGTCTTCCACCCCAACGAGCCCATTATTGGATCTTGCAGTAGTGATAAGCAGATATATCTGGGGGAAATCTGA

Protein Analysis

411

Amino Acids

45.84

Weight (kDa)

7.97

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_Aladin PF25460 106 - 195 1.7e-06 Aladin seven-bladed propeller
WD40 PF00400 113 - 149 5.6e-08 WD domain, G-beta repeat
EIF3I PF24805 113 - 320 1.4e-21 EIF3I
Beta-prop_TEP1_2nd PF25047 113 - 212 9.1e-15 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 114 - 236 8.3e-28 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 116 - 287 2.6e-25 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 117 - 406 1.4e-62 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 117 - 204 2.9e-11 WDHD1 first WD40 domain
WD40_CDC20-Fz PF24807 117 - 317 5.1e-29 CDC20/Fizzy WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 117 - 235 7.8e-15 CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 118 - 231 5.6e-08 WDR36/Utp21 first beta-propeller
Beta-prop_EML_2 PF23414 118 - 204 8e-15 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_EML PF23409 120 - 202 8.4e-06 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_THOC3 PF25174 120 - 336 3.2e-41 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 121 - 234 1.5e-06 MABP1/WDR62 second WD40 domain
WDR55 PF24796 121 - 245 3.9e-18 WDR55
Beta-prop_WDR41 PF25178 134 - 214 6.6e-07 WDR41
Beta-prop_WDR3_2nd PF25172 154 - 243 9e-08 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 211 - 407 3.7e-27 Prp19 WD40 domain
Beta-prop_EML_2 PF23414 220 - 330 4.2e-11 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_2nd PF25172 221 - 318 8.8e-13 WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_2nd PF25168 221 - 320 6.6e-11 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 222 - 332 2.6e-09 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st PF25173 223 - 338 2.8e-19 WDR3 first beta-propeller domain
Beta-prop_WDR90_POC16_2nd PF23393 224 - 320 4.2e-08 WDR90/POC16, second beta-propeller
Beta-prop_EML PF23409 248 - 406 3.4e-09 Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st PF24817 250 - 351 9.7e-13 WDHD1 first WD40 domain
Beta-prop_CAF1B_HIR1 PF24105 251 - 331 3.4e-09 CAF1B/HIR1 beta-propeller domain
Beta-prop_SCAP PF24017 257 - 371 2.4e-06 SCAP Beta-propeller
EIF3I PF24805 260 - 408 1.9e-08 EIF3I
WDR55 PF24796 260 - 389 2.8e-12 WDR55
WD40 PF00400 282 - 318 2.2e-08 WD domain, G-beta repeat
Beta-prop_TEP1_2nd PF25047 283 - 394 2e-11 TEP-1 second beta-propeller
Beta-prop_Aladin PF25460 285 - 371 7.3e-06 Aladin seven-bladed propeller
Beta-prop_EML_2 PF23414 306 - 408 3.4e-06 Echinoderm microtubule-associated protein second beta-propeller
WD40 PF00400 327 - 368 1.6e-06 WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1 PF24105 328 - 407 2.8e-07 CAF1B/HIR1 beta-propeller domain
Beta-prop_THOC3 PF25174 343 - 407 1.2e-09 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 346 - 406 2.6e-10 WDR3 first beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G43770
fragaria_vesca FvH4_4g10290 FvH4_4g10290 FvH4_4g10290 FvH4_4g10290 FvH4_4g10290
malus_domestica MD16G1243600.v1.1
prunus_persica Prupe.1G071000_v2.0.a1
pyrus_communis pycom16g20470
rosa_chinensis RchiOBHm_Chr4g0405641
rosa_laevigata RLG00000008830
rosa_multiflora Rmu_sc0001200.1_g000049
rosa_roxburghii Rroxscaffold_5G00350120
rosa_rugosa Rorug04G0061600
rosa_samantha Rh4AG133000 Rh4BG128000 Rh4CG140700 Rh4DG127400
rosa_wichuraiana Rw4G010780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
Acc16I TGCGCA 1 cut(s) 833
AccB1I GGYRCC 3 cut(s) 334, 719, 1002
AccB7I CCANNNNNTGG 1 cut(s) 699
AccI GTMKAC 2 cut(s) 272, 1092
AciI CCGC 1 cut(s) 656
AclWI GGATC 4 cut(s) 513, 682, 1156, 1201
AcoI YGGCCR 1 cut(s) 1068
AcsI RAATTY 3 cut(s) 383, 432, 628
AcuI CTGAAG 1 cut(s) 861
AfaI GTAC 1 cut(s) 846
AfiI CCNNNNNNNGG 4 cut(s) 224, 296, 699, 1190
AgsI TTSAA 5 cut(s) 184, 324, 860, 1019, 1033
AjnI CCWGG 1 cut(s) 254
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 6 cut(s) 46, 77, 82, 109, 765, 1041
AluI AGCT 6 cut(s) 46, 77, 82, 109, 765, 1041
Alw26I GTCTC 3 cut(s) 423, 534, 575
AlwI GGATC 4 cut(s) 513, 682, 1156, 1201
AoxI GGCC 4 cut(s) 257, 299, 1068, 1138
ApeKI GCWGC 2 cut(s) 346, 1132
ApoI RAATTY 3 cut(s) 383, 432, 628
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
AspLEI GCGC 2 cut(s) 834, 960
AspS9I GGNCC 4 cut(s) 251, 299, 653, 1138
AsuC2I CCSGG 1 cut(s) 1137
AsuHPI GGTGA 2 cut(s) 239, 1038
AvaII GGWCC 2 cut(s) 251, 653
BaeGI GKGCMC 1 cut(s) 1005
BanI GGYRCC 3 cut(s) 334, 719, 1002
BanII GRGCYC 1 cut(s) 1185
BbsI GAAGAC 1 cut(s) 1159
BbvI GCAGC 2 cut(s) 333, 1119
BccI CCATC 8 cut(s) 21, 518, 598, 677, 731, 896, 1046, 1081
BceAI ACGGC 1 cut(s) 1083
BciT130I CCWGG 1 cut(s) 256
BciVI GTATCC 1 cut(s) 1096
BcnI CCSGG 1 cut(s) 1137
BcoDI GTCTC 3 cut(s) 423, 534, 575
BfmI CTRYAG 1 cut(s) 243
BfuI GTATCC 1 cut(s) 1096
BisI GCNGC 2 cut(s) 347, 1133
BlpI GCTNAGC 1 cut(s) 78
BlsI GCNGC 2 cut(s) 348, 1134
BmcAI AGTACT 1 cut(s) 846
Bme1390I CCNGG 2 cut(s) 256, 1137
Bme18I GGWCC 2 cut(s) 251, 653
BmgT120I GGNCC 4 cut(s) 251, 299, 653, 1138
BmiI GGNNCC 4 cut(s) 253, 336, 721, 1004
BmrFI CCNGG 2 cut(s) 256, 1137
BmsI GCATC 6 cut(s) 195, 302, 419, 763, 785, 1128
BoxI GACNNNNGTC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 1159
Bpu1102I GCTNAGC 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 1137
BsaI GGTCTC 2 cut(s) 423, 534
BsaJI CCNNGG 1 cut(s) 254
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 296, 699, 1190
Bse118I RCCGGY 1 cut(s) 1070
Bse1I ACTGG 4 cut(s) 358, 518, 546, 1150
Bse3DI GCAATG 1 cut(s) 134
BseBI CCWGG 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 5 cut(s) 580, 637, 723, 778, 1092
BseLI CCNNNNNNNGG 4 cut(s) 224, 296, 699, 1190
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 3 cut(s) 92, 171, 545
BseNI ACTGG 4 cut(s) 358, 518, 546, 1150
BseSI GKGCMC 1 cut(s) 1005
BseX3I CGGCCG 1 cut(s) 1068
BseXI GCAGC 2 cut(s) 333, 1119
Bsh1285I CGRYCG 1 cut(s) 1071
BshFI GGCC 4 cut(s) 259, 301, 1070, 1140
BshNI GGYRCC 3 cut(s) 334, 719, 1002
BsiEI CGRYCG 1 cut(s) 1071
BsiSI CCGG 3 cut(s) 396, 1071, 1136
BslFI GGGAC 2 cut(s) 237, 839
BslI CCNNNNNNNGG 4 cut(s) 224, 296, 699, 1190
BsmAI GTCTC 3 cut(s) 423, 534, 575
BsmBI CGTCTC 1 cut(s) 575
BsmFI GGGAC 2 cut(s) 237, 839
BsmI GAATGC 2 cut(s) 464, 499
BsnI GGCC 4 cut(s) 259, 301, 1070, 1140
Bso31I GGTCTC 2 cut(s) 423, 534
Bsp1286I GDGCHC 2 cut(s) 1005, 1185
Bsp143I GATC 4 cut(s) 505, 674, 1148, 1193
Bsp1720I GCTNAGC 1 cut(s) 78
BspACI CCGC 1 cut(s) 656
BspANI GGCC 4 cut(s) 259, 301, 1070, 1140
BspCNI CTCAG 3 cut(s) 91, 170, 544
BspHI TCATGA 1 cut(s) 421
BspLI GGNNCC 4 cut(s) 253, 336, 721, 1004
BspPI GGATC 4 cut(s) 513, 682, 1156, 1201
BspT107I GGYRCC 3 cut(s) 334, 719, 1002
BspTNI GGTCTC 2 cut(s) 423, 534
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 1070
BsrI ACTGG 4 cut(s) 358, 518, 546, 1150
BssAI RCCGGY 1 cut(s) 1070
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 4 cut(s) 505, 674, 1148, 1193
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 403, 562
Bst6I CTCTTC 1 cut(s) 622
BstAPI GCANNNNNTGC 1 cut(s) 942
BstC8I GCNNGC 2 cut(s) 286, 1072
BstDEI CTNAG 3 cut(s) 78, 157, 531
BstEII GGTNACC 1 cut(s) 1044
BstF5I GGATG 5 cut(s) 580, 637, 723, 778, 1092
BstHHI GCGC 2 cut(s) 834, 960
BstKTI GATC 4 cut(s) 508, 677, 1151, 1196
BstMAI GTCTC 3 cut(s) 423, 534, 575
BstMBI GATC 4 cut(s) 505, 674, 1148, 1193
BstMCI CGRYCG 1 cut(s) 1071
BstMWI GCNNNNNNNGC 2 cut(s) 290, 942
BstNI CCWGG 1 cut(s) 256
BstPAI GACNNNNGTC 1 cut(s) 97
BstPI GGTNACC 1 cut(s) 1044
BstSCI CCNGG 2 cut(s) 254, 1135
BstSFI CTRYAG 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 1005
BstV1I GCAGC 2 cut(s) 333, 1119
BstV2I GAAGAC 1 cut(s) 1159
BstX2I RGATCY 4 cut(s) 505, 674, 1148, 1193
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 4 cut(s) 505, 674, 1148, 1193
BstZI CGGCCG 1 cut(s) 1068
BsuI GTATCC 1 cut(s) 1096
BsuRI GGCC 4 cut(s) 259, 301, 1070, 1140
BtsCI GGATG 5 cut(s) 580, 637, 723, 778, 1092
BtsIMutI CAGTG 3 cut(s) 511, 676, 1143
Cac8I GCNNGC 2 cut(s) 286, 1072
CciI TCATGA 1 cut(s) 421
CfoI GCGC 2 cut(s) 834, 960
Cfr10I RCCGGY 1 cut(s) 1070
Cfr13I GGNCC 4 cut(s) 251, 299, 653, 1138
CseI GACGC 1 cut(s) 1125
Csp6I GTAC 1 cut(s) 845
CviAII CATG 5 cut(s) 343, 422, 452, 472, 570
CviQI GTAC 1 cut(s) 845
DdeI CTNAG 3 cut(s) 78, 157, 531
DpnI GATC 4 cut(s) 507, 676, 1150, 1195
DpnII GATC 4 cut(s) 505, 674, 1148, 1193
DraI TTTAAA 1 cut(s) 480
EaeI YGGCCR 1 cut(s) 1068
EagI CGGCCG 1 cut(s) 1068
Eam1104I CTCTTC 1 cut(s) 622
EarI CTCTTC 1 cut(s) 622
EclXI CGGCCG 1 cut(s) 1068
Eco24I GRGCYC 1 cut(s) 1185
Eco31I GGTCTC 2 cut(s) 423, 534
Eco47I GGWCC 2 cut(s) 251, 653
Eco52I CGGCCG 1 cut(s) 1068
Eco57I CTGAAG 1 cut(s) 861
Eco91I GGTNACC 1 cut(s) 1044
EcoO65I GGTNACC 1 cut(s) 1044
EcoRI GAATTC 1 cut(s) 628
EcoRII CCWGG 1 cut(s) 254
EcoT22I ATGCAT 1 cut(s) 778
EcoT38I GRGCYC 1 cut(s) 1185
Esp3I CGTCTC 1 cut(s) 575
FaeI CATG 5 cut(s) 346, 425, 455, 475, 573
FalI AAGNNNNNCTT 2 cut(s) 66, 98
FaqI GGGAC 2 cut(s) 237, 839
FatI CATG 5 cut(s) 342, 421, 451, 471, 569
FauNDI CATATG 1 cut(s) 1097
FblI GTMKAC 2 cut(s) 272, 1092
Fnu4HI GCNGC 2 cut(s) 347, 1133
FokI GGATG 5 cut(s) 587, 624, 710, 785, 1099
FriOI GRGCYC 1 cut(s) 1185
Fsp4HI GCNGC 2 cut(s) 347, 1133
FspI TGCGCA 1 cut(s) 833
GlaI GCGC 2 cut(s) 833, 959
GluI GCNGC 2 cut(s) 347, 1133
HaeIII GGCC 4 cut(s) 259, 301, 1070, 1140
HapII CCGG 3 cut(s) 396, 1071, 1136
HgaI GACGC 1 cut(s) 1125
HhaI GCGC 2 cut(s) 834, 960
Hin1II CATG 5 cut(s) 346, 425, 455, 475, 573
Hin6I GCGC 2 cut(s) 832, 958
HinP1I GCGC 2 cut(s) 832, 958
HinfI GANTC 3 cut(s) 197, 895, 1160
HpaII CCGG 3 cut(s) 396, 1071, 1136
HphI GGTGA 2 cut(s) 239, 1038
Hpy166II GTNNAC 2 cut(s) 273, 1093
Hpy188I TCNGA 8 cut(s) 534, 648, 679, 772, 781, 918, 1081, 1235
Hpy188III TCNNGA 6 cut(s) 422, 551, 737, 869, 899, 1113
Hpy8I GTNNAC 2 cut(s) 273, 1093
Hpy99I CGWCG 1 cut(s) 1119
HpyAV CCTTC 1 cut(s) 992
HpyCH4III ACNGT 2 cut(s) 403, 562
HpyCH4V TGCA 8 cut(s) 208, 293, 462, 776, 936, 945, 968, 1200
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 942
HpyF3I CTNAG 3 cut(s) 78, 157, 531
Hsp92II CATG 5 cut(s) 346, 425, 455, 475, 573
HspAI GCGC 2 cut(s) 832, 958
KroI GCCGGC 1 cut(s) 1070
KroNI GCCGGC 1 cut(s) 1072
Kzo9I GATC 4 cut(s) 505, 674, 1148, 1193
LmnI GCTCC 1 cut(s) 220
Lsp1109I GCAGC 2 cut(s) 333, 1119
LweI GCATC 6 cut(s) 195, 302, 419, 763, 785, 1128
MaeIII GTNAC 3 cut(s) 85, 1044, 1063
MalI GATC 4 cut(s) 507, 676, 1150, 1195
MboI GATC 4 cut(s) 505, 674, 1148, 1193
MboII GAAGA 4 cut(s) 500, 609, 905, 1159
MflI RGATCY 4 cut(s) 505, 674, 1148, 1193
MhlI GDGCHC 2 cut(s) 1005, 1185
MluCI AATT 4 cut(s) 383, 432, 594, 628
MlyI GAGTC 2 cut(s) 904, 1169
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 6 cut(s) 217, 325, 644, 669, 708, 791
Mph1103I ATGCAT 1 cut(s) 778
MroNI GCCGGC 1 cut(s) 1070
MseI TTAA 5 cut(s) 42, 387, 479, 597, 816
MslI CAYNNNNRTG 2 cut(s) 363, 492
MspI CCGG 3 cut(s) 396, 1071, 1136
MspR9I CCNGG 2 cut(s) 256, 1137
Mva1269I GAATGC 2 cut(s) 464, 499
MvaI CCWGG 1 cut(s) 256
MwoI GCNNNNNNNGC 2 cut(s) 290, 942
NaeI GCCGGC 1 cut(s) 1072
NciI CCSGG 1 cut(s) 1137
NdeI CATATG 1 cut(s) 1097
NdeII GATC 4 cut(s) 505, 674, 1148, 1193
NgoMIV GCCGGC 1 cut(s) 1070
NlaIII CATG 5 cut(s) 346, 425, 455, 475, 573
NlaIV GGNNCC 4 cut(s) 253, 336, 721, 1004
NmuCI GTSAC 3 cut(s) 85, 1044, 1063
NsbI TGCGCA 1 cut(s) 833
NsiI ATGCAT 1 cut(s) 778
PagI TCATGA 1 cut(s) 421
PctI GAATGC 2 cut(s) 464, 499
PdiI GCCGGC 1 cut(s) 1072
PfeI GAWTC 1 cut(s) 197
PflMI CCANNNNNTGG 1 cut(s) 699
PkrI GCNGC 2 cut(s) 348, 1134
PleI GAGTC 2 cut(s) 903, 1168
PpsI GAGTC 2 cut(s) 903, 1168
PshAI GACNNNNGTC 1 cut(s) 97
PsiI TTATAA 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 254
PspEI GGTNACC 1 cut(s) 1044
PspGI CCWGG 1 cut(s) 254
PspN4I GGNNCC 4 cut(s) 253, 336, 721, 1004
PspPI GGNCC 4 cut(s) 251, 299, 653, 1138
PsuI RGATCY 4 cut(s) 505, 674, 1148, 1193
RsaI GTAC 1 cut(s) 846
RsaNI GTAC 1 cut(s) 845
RseI CAYNNNNRTG 2 cut(s) 363, 492
SaqAI TTAA 5 cut(s) 42, 387, 479, 597, 816
SatI GCNGC 2 cut(s) 347, 1133
Sau3AI GATC 4 cut(s) 505, 674, 1148, 1193
Sau96I GGNCC 4 cut(s) 251, 299, 653, 1138
ScaI AGTACT 1 cut(s) 846
SchI GAGTC 2 cut(s) 904, 1169
ScrFI CCNGG 2 cut(s) 256, 1137
SduI GDGCHC 2 cut(s) 1005, 1185
SfaNI GCATC 6 cut(s) 195, 302, 419, 763, 785, 1128
SfcI CTRYAG 1 cut(s) 243
SinI GGWCC 2 cut(s) 251, 653
SmiMI CAYNNNNRTG 2 cut(s) 363, 492
Sse9I AATT 4 cut(s) 383, 432, 594, 628
SsiI CCGC 1 cut(s) 656
StyD4I CCNGG 2 cut(s) 254, 1135
TaaI ACNGT 2 cut(s) 403, 562
TaqI TCGA 1 cut(s) 1114
TasI AATT 4 cut(s) 383, 432, 594, 628
TatI WGTACW 1 cut(s) 844
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 5 cut(s) 42, 387, 479, 597, 816
Tru9I TTAA 5 cut(s) 42, 387, 479, 597, 816
TscAI CASTG 3 cut(s) 518, 676, 1150
TseFI GTSAC 3 cut(s) 85, 1044, 1063
TseI GCWGC 2 cut(s) 346, 1132
Tsp45I GTSAC 3 cut(s) 85, 1044, 1063
TspDTI ATGAA 5 cut(s) 123, 395, 440, 460, 609
TspRI CASTG 3 cut(s) 518, 676, 1150
Van91I CCANNNNNTGG 1 cut(s) 699
VpaK11BI GGWCC 2 cut(s) 251, 653
XapI RAATTY 3 cut(s) 383, 432, 628
XmiI GTMKAC 2 cut(s) 272, 1092
ZrmI AGTACT 1 cut(s) 846
Zsp2I ATGCAT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.