Prupe.1G083400_v2.0.a1

ATP-dependent Clp protease adaptor protein ClpS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0021217
Physical Location & Seq
Forward (+)
6195811 .. 6197490
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G083400.1

Sequence Viewer

Length: 369 bp
ATGGCTGTGAAGGCCAGGTTTAGGTCTTCCAAGGGTGGTGCTGGGGTCTTGGAGCGCCCAAAGTTTGACCAATCCCAATTTGACCCTGCTACCCAGCTTGAACAAGGAGGAGATATTGGACGACTCAAGGACAAGAGAGGTATTGGGAGTAGGGATAGTTACAGAGTTTTGCTGGTTGATGATGTTCGCCACACTGAGAAATTAGGAACCGAACCGGAACCGGACAGGTCTGGTTTGGTTCGGATTTCTGTATGGATGTTGAGCAGAACCGGTCCAAACCGAACCGGTCTGCACTATCGGATCAGGTTCTATTTTTTCCCCGAAACCGATCCAAACCGAACCGTGCCCAGCCCTACTTGTATTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

123

Amino Acids

13.82

Weight (kDa)

9.99

Isoelectric Point (pI)

53.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 308, 323
AfiI CCNNNNNNNGG 1 cut(s) 21
AgeI ACCGGT 2 cut(s) 269, 284
AgsI TTSAA 1 cut(s) 101
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
AlwI GGATC 2 cut(s) 308, 323
AoxI GGCC 1 cut(s) 12
AsiGI ACCGGT 2 cut(s) 269, 284
AspLEI GCGC 1 cut(s) 57
AspS9I GGNCC 1 cut(s) 272
AvaII GGWCC 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 348
BbsI GAAGAC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 16
BfoI RGCGCY 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 16
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 208, 219
BmrFI CCNGG 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 4 cut(s) 214, 220, 269, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 21
Bse118I RCCGGY 2 cut(s) 269, 284
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 123
BseSI GKGCMC 1 cut(s) 348
BseYI CCCAGC 3 cut(s) 41, 93, 347
BsgI GTGCAG 1 cut(s) 275
BshFI GGCC 1 cut(s) 14
BshTI ACCGGT 2 cut(s) 269, 284
BsiSI CCGG 4 cut(s) 215, 221, 270, 285
BslI CCNNNNNNNGG 1 cut(s) 21
BsnI GGCC 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 2 cut(s) 300, 328
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 208, 219
BspPI GGATC 2 cut(s) 308, 323
BsrFI RCCGGY 2 cut(s) 269, 284
BssAI RCCGGY 2 cut(s) 269, 284
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 2 cut(s) 300, 328
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 343
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 261
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 2 cut(s) 303, 331
BstMBI GATC 2 cut(s) 300, 328
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstSLI GKGCMC 1 cut(s) 348
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 192
CfoI GCGC 1 cut(s) 57
Cfr10I RCCGGY 2 cut(s) 269, 284
Cfr13I GGNCC 1 cut(s) 272
CspAI ACCGGT 2 cut(s) 269, 284
CviJI RGCY 4 cut(s) 5, 14, 97, 351
CviKI_1 RGCY 4 cut(s) 5, 14, 97, 351
DdeI CTNAG 1 cut(s) 195
DpnI GATC 2 cut(s) 302, 330
DpnII GATC 2 cut(s) 300, 328
Eco130I CCWWGG 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaiI YATR 1 cut(s) 253
FokI GGATG 1 cut(s) 268
GlaI GCGC 1 cut(s) 56
GsaI CCCAGC 3 cut(s) 45, 97, 351
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 1 cut(s) 14
HapII CCGG 4 cut(s) 215, 221, 270, 285
HhaI GCGC 1 cut(s) 57
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HinfI GANTC 1 cut(s) 123
HpaII CCGG 4 cut(s) 215, 221, 270, 285
Hpy188I TCNGA 2 cut(s) 243, 300
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4V TGCA 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 195
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 2 cut(s) 300, 328
LmnI GCTCC 1 cut(s) 52
MaeIII GTNAC 1 cut(s) 158
MalI GATC 2 cut(s) 302, 330
MboI GATC 2 cut(s) 300, 328
MboII GAAGA 1 cut(s) 18
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 2 cut(s) 77, 200
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 2 cut(s) 101, 131
MseI TTAA 1 cut(s) 363
MspI CCGG 4 cut(s) 215, 221, 270, 285
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 2 cut(s) 300, 328
NlaIV GGNNCC 2 cut(s) 208, 219
PinAI ACCGGT 2 cut(s) 269, 284
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 14
PspFI CCCAGC 3 cut(s) 41, 93, 347
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 208, 219
PspPI GGNCC 1 cut(s) 272
SaqAI TTAA 1 cut(s) 363
Sau3AI GATC 2 cut(s) 300, 328
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 1 cut(s) 16
SduI GDGCHC 1 cut(s) 348
SetI ASST 6 cut(s) 20, 26, 99, 142, 230, 308
SinI GGWCC 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 2 cut(s) 77, 200
StyD4I CCNGG 1 cut(s) 14
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 343
TasI AATT 2 cut(s) 77, 200
Tru1I TTAA 1 cut(s) 363
Tru9I TTAA 1 cut(s) 363
TscAI CASTG 1 cut(s) 199
TspRI CASTG 1 cut(s) 199
VpaK11BI GGWCC 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.