Prupe.7G051000_v2.0.a1

ATP-dependent Clp protease adaptor protein ClpS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0021217
Physical Location & Seq
Reverse (-)
8870829 .. 8873228
2400 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G051000.1

Sequence Viewer

Length: 459 bp
ATGGAAACAACTTACCGCCCCCACAAGAAGTTGTATCTCTACAACCAATACATCCAAAGAACACTACCAGAAAAACAACACGTCACAGTCACACCCCTCTCTGCCGCCGCTCTTCTCTTAGCCTCTCAGTCGTTGCATTGCAGGTCAGATTCTCTCTCTATCTCTCTCCTTTTTTTTTTCTTTCCCCAATTCAATTTTCTGACTCTCTCTGGCATGGCTGTGAAGGCCAGGTTTAGGTCTTCCAAGGGTGGTGCTGGGGTCTTGGAGCGCCCAAAGTTTGACCAATCCCAATTTGACCCTGCTACCCAGCTTGAACAAGGAGGAGATATTGGACGACTCAAGGACAAGAGAGGTATTGGGAGTAGGGATAGTTACAGAGTTTTGATGGTTGATGATGTTCGCCACACTGAGAAATTAGTCCAGAGCAGAATCATGATCAGAGGCTTTCCTAAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

153

Amino Acids

17.38

Weight (kDa)

10.16

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 132
AccBSI CCGCTC 1 cut(s) 110
AciI CCGC 3 cut(s) 16, 105, 108
AfiI CCNNNNNNNGG 1 cut(s) 234
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 193, 314
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 1 cut(s) 227
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
AoxI GGCC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 231
BccI CCATC 1 cut(s) 379
BciT130I CCWGG 1 cut(s) 229
BclI TGATCA 1 cut(s) 435
BfoI RGCGCY 1 cut(s) 271
BfuAI ACCTGC 1 cut(s) 132
BisI GCNGC 2 cut(s) 105, 108
BlsI GCNGC 2 cut(s) 106, 109
Bme1390I CCNGG 1 cut(s) 229
BmgBI CACGTC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 229
BpiI GAAGAC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 243
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 2 cut(s) 140, 399
BseRI GAGGAG 1 cut(s) 336
BseYI CCCAGC 2 cut(s) 254, 306
BshFI GGCC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 234
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 1 cut(s) 435
BspACI CCGC 3 cut(s) 16, 105, 108
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 139, 400
BspHI TCATGA 1 cut(s) 432
BspMI ACCTGC 1 cut(s) 132
BspQI GCTCTTC 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 136
BssECI CCNNGG 1 cut(s) 243
BssMI GATC 1 cut(s) 435
BssT1I CCWWGG 1 cut(s) 243
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 117
BstDEI CTNAG 4 cut(s) 118, 126, 408, 450
BstF5I GGATG 1 cut(s) 51
BstH2I RGCGCY 1 cut(s) 271
BstHHI GCGC 1 cut(s) 270
BstKTI GATC 1 cut(s) 438
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 227
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 227
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 405
BveI ACCTGC 1 cut(s) 132
CciI TCATGA 1 cut(s) 432
CfoI GCGC 1 cut(s) 270
CviAII CATG 2 cut(s) 214, 433
CviJI RGCY 5 cut(s) 122, 218, 227, 310, 444
CviKI_1 RGCY 5 cut(s) 122, 218, 227, 310, 444
DdeI CTNAG 4 cut(s) 118, 126, 408, 450
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 217, 436
FaiI YATR 2 cut(s) 215, 434
FatI CATG 2 cut(s) 213, 432
FbaI TGATCA 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 105, 108
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 2 cut(s) 105, 108
GlaI GCGC 1 cut(s) 269
GluI GCNGC 2 cut(s) 105, 108
GsaI CCCAGC 2 cut(s) 258, 310
HaeII RGCGCY 1 cut(s) 271
HaeIII GGCC 1 cut(s) 227
HhaI GCGC 1 cut(s) 270
Hin1II CATG 2 cut(s) 217, 436
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HinfI GANTC 4 cut(s) 149, 202, 336, 429
Hpy188I TCNGA 3 cut(s) 148, 201, 440
Hpy188III TCNNGA 2 cut(s) 421, 433
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 136, 141
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 4 cut(s) 118, 126, 408, 450
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 2 cut(s) 217, 436
HspAI GCGC 1 cut(s) 268
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 1 cut(s) 435
LguI GCTCTTC 1 cut(s) 117
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 9 cut(s) 81, 127, 195, 214, 240, 241, 312, 320, 434
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 3 cut(s) 82, 88, 371
MalI GATC 1 cut(s) 437
MbiI CCGCTC 1 cut(s) 110
MboI GATC 1 cut(s) 435
MboII GAAGA 2 cut(s) 104, 231
MluCI AATT 4 cut(s) 188, 193, 290, 413
MlyI GAGTC 2 cut(s) 196, 330
MnlI CCTC 5 cut(s) 107, 133, 314, 344, 434
MslI CAYNNNNRTG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 229
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 1 cut(s) 435
NlaIII CATG 2 cut(s) 217, 436
NmuCI GTSAC 2 cut(s) 82, 88
PagI TCATGA 1 cut(s) 432
PciSI GCTCTTC 1 cut(s) 117
PfeI GAWTC 2 cut(s) 149, 429
PkrI GCNGC 2 cut(s) 106, 109
PleI GAGTC 2 cut(s) 196, 330
PpsI GAGTC 2 cut(s) 196, 330
Psp6I CCWGG 1 cut(s) 227
PspFI CCCAGC 2 cut(s) 254, 306
PspGI CCWGG 1 cut(s) 227
RseI CAYNNNNRTG 1 cut(s) 218
SapI GCTCTTC 1 cut(s) 117
SatI GCNGC 2 cut(s) 105, 108
Sau3AI GATC 1 cut(s) 435
SchI GAGTC 2 cut(s) 196, 330
ScrFI CCNGG 1 cut(s) 229
SetI ASST 6 cut(s) 84, 146, 233, 239, 312, 355
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 4 cut(s) 188, 193, 290, 413
SsiI CCGC 3 cut(s) 16, 105, 108
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 84
TasI AATT 4 cut(s) 188, 193, 290, 413
TauI GCSGC 2 cut(s) 107, 110
TfiI GAWTC 2 cut(s) 149, 429
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 2 cut(s) 82, 88
Tsp45I GTSAC 2 cut(s) 82, 88
TspRI CASTG 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.