Prupe.2G186300_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
22727168 .. 22727419
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G186300.1

Sequence Viewer

Length: 252 bp
ATGTTAGTATATAAATACATTTTGGGTAGGTTGGGCCCATGCCCAAACCGAAACCGCATGAACCAAATCGAATCGGACAGGTCTGGGTTGGTTTGGATTTCTGTACCGATTTTAAGCAAAATCGGTCCAAATCGAACCGATCTGTACTTTCGGATTAGGTTCTATTTTTTCCCCAAAACCGGTCCAAATCGAACTGTGCCCACCCCTACTGATACTTCACTCGAATCTGTTTGGTATTTATTTGATTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.78

Weight (kDa)

9.8

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 55
AfaI GTAC 2 cut(s) 105, 146
AfiI CCNNNNNNNGG 1 cut(s) 179
AgeI ACCGGT 1 cut(s) 179
AoxI GGCC 1 cut(s) 34
ApaI GGGCCC 1 cut(s) 38
AsiGI ACCGGT 1 cut(s) 179
AspS9I GGNCC 4 cut(s) 34, 35, 125, 182
AvaII GGWCC 2 cut(s) 125, 182
BaeGI GKGCMC 2 cut(s) 38, 201
BanII GRGCYC 1 cut(s) 38
Bme18I GGWCC 2 cut(s) 125, 182
BmgT120I GGNCC 4 cut(s) 34, 35, 125, 182
BmiI GGNNCC 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 179
BseSI GKGCMC 2 cut(s) 38, 201
BshFI GGCC 1 cut(s) 36
BshTI ACCGGT 1 cut(s) 179
BsiSI CCGG 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 179
BsnI GGCC 1 cut(s) 36
Bsp120I GGGCCC 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 38, 201
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 36
BspLI GGNNCC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssMI GATC 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 196
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstSLI GKGCMC 2 cut(s) 38, 201
BsuRI GGCC 1 cut(s) 36
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 4 cut(s) 34, 35, 125, 182
Csp6I GTAC 2 cut(s) 104, 145
CspAI ACCGGT 1 cut(s) 179
CviAII CATG 2 cut(s) 39, 58
CviJI RGCY 1 cut(s) 36
CviKI_1 RGCY 1 cut(s) 36
CviQI GTAC 2 cut(s) 104, 145
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 125, 182
EcoT38I GRGCYC 1 cut(s) 38
FaeI CATG 2 cut(s) 42, 61
FaiI YATR 4 cut(s) 10, 12, 40, 59
FatI CATG 2 cut(s) 38, 57
FriOI GRGCYC 1 cut(s) 38
HaeIII GGCC 1 cut(s) 36
HapII CCGG 1 cut(s) 180
Hin1II CATG 2 cut(s) 42, 61
HinfI GANTC 2 cut(s) 71, 224
HpaII CCGG 1 cut(s) 180
Hpy188I TCNGA 2 cut(s) 76, 153
HpyCH4III ACNGT 1 cut(s) 196
Hsp92II CATG 2 cut(s) 42, 61
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 3 cut(s) 64, 69, 193
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MhlI GDGCHC 2 cut(s) 38, 201
MseI TTAA 1 cut(s) 113
MspI CCGG 1 cut(s) 180
NdeII GATC 1 cut(s) 139
NlaIII CATG 2 cut(s) 42, 61
NlaIV GGNNCC 1 cut(s) 36
PfeI GAWTC 2 cut(s) 71, 224
PinAI ACCGGT 1 cut(s) 179
PspN4I GGNNCC 1 cut(s) 36
PspOMI GGGCCC 1 cut(s) 34
PspPI GGNCC 4 cut(s) 34, 35, 125, 182
RsaI GTAC 2 cut(s) 105, 146
RsaNI GTAC 2 cut(s) 104, 145
SaqAI TTAA 1 cut(s) 113
Sau3AI GATC 1 cut(s) 139
Sau96I GGNCC 4 cut(s) 34, 35, 125, 182
SduI GDGCHC 2 cut(s) 38, 201
SetI ASST 3 cut(s) 32, 83, 161
SgeI CNNG 6 cut(s) 51, 70, 91, 96, 192, 233
SinI GGWCC 2 cut(s) 125, 182
SsiI CCGC 1 cut(s) 55
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 4 cut(s) 69, 133, 190, 222
TaqII GACCGA 1 cut(s) 113
TatI WGTACW 1 cut(s) 144
TfiI GAWTC 2 cut(s) 71, 224
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
TspDTI ATGAA 1 cut(s) 74
VpaK11BI GGWCC 2 cut(s) 125, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.