Prupe.3G229600_v2.0.a1

ATP-dependent Clp protease adaptor protein ClpS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0021217
Physical Location & Seq
Reverse (-)
22781221 .. 22782874
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G229600.1

Sequence Viewer

Length: 366 bp
CCAGCCGCCAGCCAGCCACCAGCCACCGATTCCAAACCTCTCTCTCAACCAGCACGTCACAGTCACACCCCTCTCTGCCGCCGCTCTTCTCTTAGCCTCTCAGTCGTTGCATTGCAGGCCAGGTTTAGGTCTTCCAAGGGTGGTGCTGGGGTCTTGGAGCGCCCAAAGTTTGACCAATCCCAATTTGACCCTGCTACCCAGCTTGAACAAGGAGGAGATATTGGACGACTCAAGGACAAGAGAGGTATTGGGAGTAGGGATAGTTACAGAGTTTTGCTGGTTGATGATGTTCGCCACACTGAGAAATTAGATATTATGAGTTCATCCACACCTAGCACCATAGCTCCAACTACTTTCCAATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ClpS

Protein Analysis

122

Amino Acids

13.1

Weight (kDa)

9.7

Isoelectric Point (pI)

66.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 84
AciI CCGC 3 cut(s) 6, 79, 82
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 206
AjiI CACGTC 1 cut(s) 56
AjnI CCWGG 1 cut(s) 119
AluBI AGCT 2 cut(s) 202, 344
AluI AGCT 2 cut(s) 202, 344
AoxI GGCC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 123
BciT130I CCWGG 1 cut(s) 121
BfaI CTAG 1 cut(s) 333
BfoI RGCGCY 1 cut(s) 163
BisI GCNGC 3 cut(s) 6, 79, 82
BlsI GCNGC 3 cut(s) 7, 80, 83
Bme1390I CCNGG 1 cut(s) 121
BmgBI CACGTC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 135
BsaXI ACNNNNNCTCC 2 cut(s) 328, 358
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse3DI GCAATG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 1 cut(s) 323
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 114, 291
BseRI GAGGAG 1 cut(s) 228
BseYI CCCAGC 2 cut(s) 146, 198
BshFI GGCC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 126
BsnI GGCC 1 cut(s) 119
BspACI CCGC 3 cut(s) 6, 79, 82
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 2 cut(s) 113, 292
BspQI GCTCTTC 1 cut(s) 91
BsrBI CCGCTC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 62
Bst6I CTCTTC 1 cut(s) 91
BstC8I GCNNGC 3 cut(s) 10, 14, 117
BstDEI CTNAG 3 cut(s) 92, 100, 300
BstF5I GGATG 1 cut(s) 323
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 119
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 3 cut(s) 10, 14, 117
CfoI GCGC 1 cut(s) 162
CviJI RGCY 8 cut(s) 5, 12, 16, 23, 96, 119, 202, 344
CviKI_1 RGCY 8 cut(s) 5, 12, 16, 23, 96, 119, 202, 344
DdeI CTNAG 3 cut(s) 92, 100, 300
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 135
FaiI YATR 2 cut(s) 317, 341
Fnu4HI GCNGC 3 cut(s) 6, 79, 82
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 3 cut(s) 6, 79, 82
FspBI CTAG 1 cut(s) 333
GlaI GCGC 1 cut(s) 161
GluI GCNGC 3 cut(s) 6, 79, 82
GsaI CCCAGC 2 cut(s) 150, 202
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 1 cut(s) 119
HhaI GCGC 1 cut(s) 162
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 2 cut(s) 29, 228
HpyCH4III ACNGT 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 2 cut(s) 110, 115
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 3 cut(s) 92, 100, 300
HpySE526I ACGT 1 cut(s) 55
HspAI GCGC 1 cut(s) 160
LguI GCTCTTC 1 cut(s) 91
LmnI GCTCC 2 cut(s) 157, 349
MaeI CTAG 1 cut(s) 333
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 3 cut(s) 56, 62, 263
MbiI CCGCTC 1 cut(s) 84
MboII GAAGA 2 cut(s) 78, 123
MluCI AATT 2 cut(s) 182, 305
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 5 cut(s) 48, 81, 107, 206, 236
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 1 cut(s) 116
NmuCI GTSAC 2 cut(s) 56, 62
PciSI GCTCTTC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 3 cut(s) 7, 80, 83
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 119
PspFI CCCAGC 2 cut(s) 146, 198
PspGI CCWGG 1 cut(s) 119
SapI GCTCTTC 1 cut(s) 91
SatI GCNGC 3 cut(s) 6, 79, 82
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 121
SetI ASST 8 cut(s) 40, 58, 125, 131, 204, 247, 334, 346
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 2 cut(s) 182, 305
SsiI CCGC 3 cut(s) 6, 79, 82
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 119
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 62
TaiI ACGT 1 cut(s) 58
TasI AATT 2 cut(s) 182, 305
TauI GCSGC 3 cut(s) 8, 81, 84
TfiI GAWTC 1 cut(s) 29
TscAI CASTG 1 cut(s) 304
TseFI GTSAC 2 cut(s) 56, 62
Tsp45I GTSAC 2 cut(s) 56, 62
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 1 cut(s) 304
XspI CTAG 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.