Prupe.1G169000_v2.0.a1

histone H2B.1

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
13811674 .. 13813004
1331 bp
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UTR
Exon/CDS
Intron
Prupe.1G169000.1

Sequence Viewer

Length: 171 bp
ATGATATATTTGGGTTTTGAGAAGCTTGCTCAGGAATCTTCGACCCTCGCAAGGTACAACAAGAAACCGACTATTACTTCAAGGGAGATCCAGACTGCTGTGACTTGCTGTCTGTTACCAAGTTTACTAGCTCTTCAAGAGTTAGGGCTGTTTCTGTGTATTTGTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

57

Amino Acids

6.25

Weight (kDa)

7.64

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021857)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02570
prunus_persica Prupe.1G169000_v2.0.a1
rosa_samantha Rh5BG501400
rosa_wichuraiana Rw5G044660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 82
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 2 cut(s) 81, 137
AhdI GACNNNNNGTC 1 cut(s) 108
AluBI AGCT 2 cut(s) 25, 131
AluI AGCT 2 cut(s) 25, 131
AlwI GGATC 1 cut(s) 82
BfaI CTAG 1 cut(s) 128
BmeRI GACNNNNNGTC 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 51
Bsp143I GATC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 138
BssMI GATC 1 cut(s) 87
Bst6I CTCTTC 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 30
BstKTI GATC 1 cut(s) 90
BstMBI GATC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 27
Csp6I GTAC 1 cut(s) 55
CviJI RGCY 3 cut(s) 25, 131, 148
CviKI_1 RGCY 3 cut(s) 25, 131, 148
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 30
DpnI GATC 1 cut(s) 89
DpnII GATC 1 cut(s) 87
DriI GACNNNNNGTC 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 138
Eam1105I GACNNNNNGTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 138
FaiI YATR 1 cut(s) 7
FspBI CTAG 1 cut(s) 128
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 35
Hpy166II GTNNAC 1 cut(s) 125
Hpy188III TCNNGA 3 cut(s) 32, 91, 137
Hpy8I GTNNAC 1 cut(s) 125
HpyF3I CTNAG 1 cut(s) 30
Kzo9I GATC 1 cut(s) 87
LguI GCTCTTC 1 cut(s) 138
LpnPI CCDG 2 cut(s) 17, 104
MaeI CTAG 1 cut(s) 128
MaeIII GTNAC 2 cut(s) 100, 114
MalI GATC 1 cut(s) 89
MboI GATC 1 cut(s) 87
MboII GAAGA 2 cut(s) 30, 125
MflI RGATCY 1 cut(s) 87
MnlI CCTC 1 cut(s) 56
NdeII GATC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 100
PciSI GCTCTTC 1 cut(s) 138
PfeI GAWTC 1 cut(s) 35
PsuI RGATCY 1 cut(s) 87
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SapI GCTCTTC 1 cut(s) 138
Sau3AI GATC 1 cut(s) 87
SetI ASST 3 cut(s) 27, 56, 133
SspMI CTAG 1 cut(s) 128
TaqI TCGA 1 cut(s) 41
TfiI GAWTC 1 cut(s) 35
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
XspI CTAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.