Rw5G044660

histone H2B.1

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
78340807 .. 78340998
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044660.1

Sequence Viewer

Length: 192 bp
ATGAACAAATTCATCAACGACATCTTCGAGAAGCTCGCTCAGGAGTCGTCGAGGCTCGCCAGGTACAACAAGAAGCCGACAATTACTTCCCGGGACATCCAGACGGTGGTGAGGCTTGTGCTTCCCGGTGAATTGGCTAAGCATGCTGTTTCTGAGGGGACTAAGGCGGTGACCAAGTTCACAAGCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

7.07

Weight (kDa)

9.99

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 1 - 39 3e-09 Core histone H2A/H2B/H3/H4 domain
Histone_ABTB PF26281 5 - 62 2.4e-07 Histone domain in ABTB family protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021857)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02570
prunus_persica Prupe.1G169000_v2.0.a1
rosa_samantha Rh5BG501400
rosa_wichuraiana Rw5G044660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 106
AciI CCGC 1 cut(s) 167
AcsI RAATTY 1 cut(s) 8
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 106
AjnI CCWGG 1 cut(s) 59
AluBI AGCT 2 cut(s) 34, 186
AluI AGCT 2 cut(s) 34, 186
Ama87I CYCGRG 1 cut(s) 90
ApoI RAATTY 1 cut(s) 8
Asp700I GAANNNNTTC 1 cut(s) 8
AsuC2I CCSGG 3 cut(s) 91, 92, 126
AsuHPI GGTGA 3 cut(s) 121, 140, 181
AvaI CYCGRG 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 61
BcnI CCSGG 3 cut(s) 91, 92, 126
BlpI GCTNAGC 1 cut(s) 138
Bme1390I CCNGG 4 cut(s) 61, 91, 92, 126
BmeT110I CYCGRG 1 cut(s) 90
BmrFI CCNGG 4 cut(s) 61, 91, 92, 126
Bpu10I CCTNAGC 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 138
BpuMI CCSGG 3 cut(s) 91, 92, 126
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 1 cut(s) 106
BseBI CCWGG 1 cut(s) 61
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 96
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 2 cut(s) 53, 144
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 2 cut(s) 91, 126
BslFI GGGAC 2 cut(s) 107, 172
BslI CCNNNNNNNGG 1 cut(s) 106
BsmFI GGGAC 2 cut(s) 107, 172
BsoBI CYCGRG 1 cut(s) 90
Bsp1720I GCTNAGC 1 cut(s) 138
BspACI CCGC 1 cut(s) 167
BspCNI CTCAG 2 cut(s) 52, 145
BssECI CCNNGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 106
BstC8I GCNNGC 3 cut(s) 36, 57, 144
BstDEI CTNAG 4 cut(s) 39, 138, 153, 162
BstEII GGTNACC 1 cut(s) 169
BstF5I GGATG 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 146
BstPI GGTNACC 1 cut(s) 169
BstSCI CCNGG 4 cut(s) 59, 89, 90, 124
BtsCI GGATG 1 cut(s) 96
Cac8I GCNNGC 3 cut(s) 36, 57, 144
Cfr9I CCCGGG 1 cut(s) 90
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 143
CviJI RGCY 6 cut(s) 34, 55, 76, 115, 137, 186
CviKI_1 RGCY 6 cut(s) 34, 55, 76, 115, 137, 186
CviQI GTAC 1 cut(s) 64
DdeI CTNAG 4 cut(s) 39, 138, 153, 162
Eco88I CYCGRG 1 cut(s) 90
Eco91I GGTNACC 1 cut(s) 169
EcoO65I GGTNACC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 59
FaeI CATG 1 cut(s) 146
FaiI YATR 1 cut(s) 144
FaqI GGGAC 2 cut(s) 107, 172
FatI CATG 1 cut(s) 142
FokI GGATG 1 cut(s) 83
HapII CCGG 2 cut(s) 91, 126
Hin1II CATG 1 cut(s) 146
HinfI GANTC 1 cut(s) 44
HpaII CCGG 2 cut(s) 91, 126
HphI GGTGA 3 cut(s) 121, 140, 181
Hpy166II GTNNAC 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 154
Hpy188III TCNNGA 4 cut(s) 28, 41, 100, 189
Hpy8I GTNNAC 1 cut(s) 180
Hpy99I CGWCG 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 4 cut(s) 39, 138, 153, 162
Hsp92II CATG 1 cut(s) 146
LpnPI CCDG 6 cut(s) 26, 46, 73, 104, 113, 139
MaeIII GTNAC 1 cut(s) 169
MboII GAAGA 1 cut(s) 16
MluCI AATT 3 cut(s) 8, 81, 131
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 3 cut(s) 45, 105, 148
MroXI GAANNNNTTC 1 cut(s) 8
MspI CCGG 2 cut(s) 91, 126
MspR9I CCNGG 4 cut(s) 61, 91, 92, 126
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 143
NciI CCSGG 3 cut(s) 91, 92, 126
NlaIII CATG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 169
NspI RCATGY 1 cut(s) 146
PaeI GCATGC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 24
PdmI GAANNNNTTC 1 cut(s) 8
PflMI CCANNNNNTGG 1 cut(s) 106
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 169
PspGI CCWGG 1 cut(s) 59
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 4 cut(s) 61, 91, 92, 126
SetI ASST 3 cut(s) 36, 65, 188
SmaI CCCGGG 1 cut(s) 92
SphI GCATGC 1 cut(s) 146
Sse9I AATT 3 cut(s) 8, 81, 131
SsiI CCGC 1 cut(s) 167
StyD4I CCNGG 4 cut(s) 59, 89, 90, 124
TaaI ACNGT 1 cut(s) 106
TaqI TCGA 2 cut(s) 27, 50
TasI AATT 3 cut(s) 8, 81, 131
TseFI GTSAC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 106
XapI RAATTY 1 cut(s) 8
XceI RCATGY 1 cut(s) 146
XmaI CCCGGG 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.