Prupe.1G274800_v2.0.a1

clavata3 esr-related 45

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012439
Physical Location & Seq
Reverse (-)
28063689 .. 28063982
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G274800.1

Sequence Viewer

Length: 294 bp
ATGGTTTTCAGTTCTCATGGTGTGTTTGTTCTTCTTTTCTGTATTGGGTTGTTCTTAGTAGTTCAACCAGATGAAGTCTCTGCCCTCACAAGTATAGGCCTAGCCCTCAGAGAGAACCAAGATCAATATCATGGAATTTTTCCGCGGCATCAACGTACTCTCAAGGCTGCCACCATGGAGGAAATGAGCACAGAGAAGAAGAATTCAACAAACACAAACAGCAACTTTGATCCAAATCAATCGAGCAAAAGAAGAGTGCGAAGAGGATCGGATCCTATCCACAATAGGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.99

Weight (kDa)

9.51

Isoelectric Point (pI)

49.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 145
AciI CCGC 2 cut(s) 143, 145
AclWI GGATC 4 cut(s) 224, 266, 274, 279
AcsI RAATTY 2 cut(s) 135, 202
AfaI GTAC 1 cut(s) 157
AgsI TTSAA 2 cut(s) 65, 207
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 1 cut(s) 82
AlwI GGATC 4 cut(s) 224, 266, 274, 279
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 1 cut(s) 167
ApoI RAATTY 2 cut(s) 135, 202
BamHI GGATCC 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 191
BbvI GCAGC 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 82
BfaI CTAG 1 cut(s) 101
BisI GCNGC 2 cut(s) 146, 168
BlsI GCNGC 2 cut(s) 147, 169
BmiI GGNNCC 1 cut(s) 273
BmsI GCATC 1 cut(s) 157
BpuEI CTTGAG 1 cut(s) 146
BsaBI GATNNNNATC 2 cut(s) 126, 234
BsaJI CCNNGG 2 cut(s) 143, 174
Bse8I GATNNNNATC 2 cut(s) 126, 234
BseDI CCNNGG 2 cut(s) 143, 174
BseJI GATNNNNATC 2 cut(s) 126, 234
BseMII CTCAG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 145
BshFI GGCC 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 82
BsnI GGCC 1 cut(s) 99
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 4 cut(s) 121, 229, 266, 271
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 2 cut(s) 143, 145
BspANI GGCC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 120
BspFNI CGCG 1 cut(s) 145
BspLI GGNNCC 1 cut(s) 273
BspPI GGATC 4 cut(s) 224, 266, 274, 279
BssECI CCNNGG 2 cut(s) 143, 174
BssMI GATC 4 cut(s) 121, 229, 266, 271
BssT1I CCWWGG 1 cut(s) 174
Bst6I CTCTTC 2 cut(s) 247, 256
BstDEI CTNAG 2 cut(s) 55, 107
BstDSI CCRYGG 2 cut(s) 143, 174
BstFNI CGCG 1 cut(s) 145
BstKTI GATC 4 cut(s) 124, 232, 269, 274
BstMAI GTCTC 1 cut(s) 82
BstMBI GATC 4 cut(s) 121, 229, 266, 271
BstUI CGCG 1 cut(s) 145
BstV1I GCAGC 1 cut(s) 154
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 99
BtgI CCRYGG 2 cut(s) 143, 174
Cfr42I CCGCGG 1 cut(s) 146
Csp6I GTAC 1 cut(s) 156
CviAII CATG 3 cut(s) 17, 131, 175
CviJI RGCY 3 cut(s) 99, 104, 167
CviKI_1 RGCY 3 cut(s) 99, 104, 167
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 2 cut(s) 55, 107
DpnI GATC 4 cut(s) 123, 231, 268, 273
DpnII GATC 4 cut(s) 121, 229, 266, 271
Eam1104I CTCTTC 2 cut(s) 247, 256
EarI CTCTTC 2 cut(s) 247, 256
Eco130I CCWWGG 1 cut(s) 174
Eco147I AGGCCT 1 cut(s) 99
EcoRI GAATTC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 174
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 3 cut(s) 20, 134, 178
FaiI YATR 4 cut(s) 18, 95, 132, 176
FatI CATG 3 cut(s) 16, 130, 174
Fnu4HI GCNGC 2 cut(s) 146, 168
Fsp4HI GCNGC 2 cut(s) 146, 168
FspBI CTAG 1 cut(s) 101
GluI GCNGC 2 cut(s) 146, 168
HaeIII GGCC 1 cut(s) 99
Hin1II CATG 3 cut(s) 20, 134, 178
Hpy188I TCNGA 2 cut(s) 110, 271
HpyCH4IV ACGT 1 cut(s) 154
HpyF3I CTNAG 2 cut(s) 55, 107
HpySE526I ACGT 1 cut(s) 154
Hsp92II CATG 3 cut(s) 20, 134, 178
KspI CCGCGG 1 cut(s) 146
Kzo9I GATC 4 cut(s) 121, 229, 266, 271
LpnPI CCDG 1 cut(s) 81
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 157
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 154
MalI GATC 4 cut(s) 123, 231, 268, 273
MboI GATC 4 cut(s) 121, 229, 266, 271
MboII GAAGA 5 cut(s) 23, 208, 211, 264, 273
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 2 cut(s) 135, 202
MnlI CCTC 4 cut(s) 95, 116, 172, 257
MseI TTAA 1 cut(s) 292
MspA1I CMGCKG 1 cut(s) 145
MvnI CGCG 1 cut(s) 145
NcoI CCATGG 1 cut(s) 174
NdeII GATC 4 cut(s) 121, 229, 266, 271
NlaIII CATG 3 cut(s) 20, 134, 178
NlaIV GGNNCC 1 cut(s) 273
PceI AGGCCT 1 cut(s) 99
PkrI GCNGC 2 cut(s) 147, 169
PspN4I GGNNCC 1 cut(s) 273
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SacII CCGCGG 1 cut(s) 146
SaqAI TTAA 1 cut(s) 292
SatI GCNGC 2 cut(s) 146, 168
Sau3AI GATC 4 cut(s) 121, 229, 266, 271
SduI GDGCHC 1 cut(s) 191
SetI ASST 2 cut(s) 157, 290
SfaNI GCATC 1 cut(s) 157
Sfr303I CCGCGG 1 cut(s) 146
SgrBI CCGCGG 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 2 cut(s) 135, 202
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 2 cut(s) 143, 145
SspMI CTAG 1 cut(s) 101
StuI AGGCCT 1 cut(s) 99
StyI CCWWGG 1 cut(s) 174
TaiI ACGT 1 cut(s) 157
TaqI TCGA 1 cut(s) 242
TasI AATT 2 cut(s) 135, 202
TauI GCSGC 1 cut(s) 148
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TseI GCWGC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 87
XapI RAATTY 2 cut(s) 135, 202
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.