Prupe.5G193600_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
15784888 .. 15785744
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G193600.1

Sequence Viewer

Length: 285 bp
ATGGGTTTTTTGGCTTATAGGAGTGCTGTTCTTTTTGTCTGTATTGGGTTTTTAGCTCTCCAGCCAGAAAAGGTTTCTGGCTTAAGAAGCATGGATTTGGCTCTCAGATGGGACAAAGGGCACATGTCATTTCTTAAAAGTTTGCATCTTGTTAAGGCTGTTGCTGTAGAGGATTTGCAAGCGAAGCTGAGTTTGGCGCCTGCCCCTTCAATGACATTTGATCCAAATCAATCAAACAAGAGAAAAGTTCGAAAAGGATCAGACCCGATTCACAACAGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.46

Weight (kDa)

9.93

Isoelectric Point (pI)

62.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 196
AclWI GGATC 2 cut(s) 215, 265
AcyI GRCGYC 1 cut(s) 197
AflII CTTAAG 1 cut(s) 82
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 176, 208
AluBI AGCT 2 cut(s) 56, 187
AluI AGCT 2 cut(s) 56, 187
AlwI GGATC 2 cut(s) 215, 265
AspLEI GCGC 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 123
BanI GGYRCC 1 cut(s) 196
BccI CCATC 1 cut(s) 102
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 1 cut(s) 154
BpmI CTGGAG 1 cut(s) 44
Bpu14I TTCGAA 1 cut(s) 250
BsaBI GATNNNNATC 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 197
Bse8I GATNNNNATC 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 225
BseMII CTCAG 2 cut(s) 118, 179
BseSI GKGCMC 1 cut(s) 123
BshNI GGYRCC 1 cut(s) 196
BslFI GGGAC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 2 cut(s) 220, 257
BspCNI CTCAG 2 cut(s) 117, 180
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 2 cut(s) 215, 265
BspT104I TTCGAA 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 196
BspTI CTTAAG 1 cut(s) 82
BssMI GATC 2 cut(s) 220, 257
BssNI GRCGYC 1 cut(s) 197
BstACI GRCGYC 1 cut(s) 197
BstAFI CTTAAG 1 cut(s) 82
BstBI TTCGAA 1 cut(s) 250
BstC8I GCNNGC 2 cut(s) 180, 201
BstDEI CTNAG 2 cut(s) 104, 188
BstH2I RGCGCY 1 cut(s) 200
BstHHI GCGC 1 cut(s) 199
BstKTI GATC 2 cut(s) 223, 260
BstMBI GATC 2 cut(s) 220, 257
BstMWI GCNNNNNNNGC 2 cut(s) 87, 184
BstNSI RCATGY 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 180, 201
CfoI GCGC 1 cut(s) 199
CviAII CATG 2 cut(s) 91, 124
CviJI RGCY 7 cut(s) 14, 56, 64, 81, 101, 158, 187
CviKI_1 RGCY 7 cut(s) 14, 56, 64, 81, 101, 158, 187
DdeI CTNAG 2 cut(s) 104, 188
DinI GGCGCC 1 cut(s) 198
DpnI GATC 2 cut(s) 222, 259
DpnII GATC 2 cut(s) 220, 257
EgeI GGCGCC 1 cut(s) 198
EheI GGCGCC 1 cut(s) 198
FaeI CATG 2 cut(s) 94, 127
FaiI YATR 3 cut(s) 18, 92, 125
FaqI GGGAC 1 cut(s) 125
FatI CATG 2 cut(s) 90, 123
GlaI GCGC 1 cut(s) 198
GsuI CTGGAG 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 200
HhaI GCGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 197
Hin1II CATG 2 cut(s) 94, 127
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 1 cut(s) 268
Hpy188I TCNGA 2 cut(s) 107, 262
HpyAV CCTTC 1 cut(s) 216
HpyCH4V TGCA 2 cut(s) 145, 178
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 184
HpyF3I CTNAG 2 cut(s) 104, 188
Hsp92I GRCGYC 1 cut(s) 197
Hsp92II CATG 2 cut(s) 94, 127
HspAI GCGC 1 cut(s) 197
KasI GGCGCC 1 cut(s) 196
Kzo9I GATC 2 cut(s) 220, 257
LpnPI CCDG 4 cut(s) 63, 74, 78, 213
LweI GCATC 1 cut(s) 154
MalI GATC 2 cut(s) 222, 259
MboI GATC 2 cut(s) 220, 257
MhlI GDGCHC 1 cut(s) 123
Mly113I GGCGCC 1 cut(s) 197
MnlI CCTC 1 cut(s) 163
MseI TTAA 3 cut(s) 83, 135, 153
MspCI CTTAAG 1 cut(s) 82
MwoI GCNNNNNNNGC 2 cut(s) 87, 184
NarI GGCGCC 1 cut(s) 197
NdeII GATC 2 cut(s) 220, 257
NlaIII CATG 2 cut(s) 94, 127
NlaIV GGNNCC 1 cut(s) 198
NspI RCATGY 1 cut(s) 127
NspV TTCGAA 1 cut(s) 250
PciI ACATGT 1 cut(s) 123
PfeI GAWTC 1 cut(s) 268
PluTI GGCGCC 1 cut(s) 200
PscI ACATGT 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 198
SaqAI TTAA 3 cut(s) 83, 135, 153
Sau3AI GATC 2 cut(s) 220, 257
SduI GDGCHC 1 cut(s) 123
SetI ASST 3 cut(s) 58, 75, 189
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 165
SfoI GGCGCC 1 cut(s) 198
SfuI TTCGAA 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 82
SmoI CTYRAG 1 cut(s) 82
SspDI GGCGCC 1 cut(s) 196
TaqI TCGA 1 cut(s) 250
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 3 cut(s) 83, 135, 153
Tru9I TTAA 3 cut(s) 83, 135, 153
Vha464I CTTAAG 1 cut(s) 82
XceI RCATGY 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.