Rorug06G0441200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012439
Physical Location & Seq
Forward (+)
57374496 .. 57374822
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0441200.1

Sequence Viewer

Length: 327 bp
ATGGGTGATACTTGCTCTGATGCAGCATCTGATGGTTCTTTGGATTATATATGTTTTACCAGCTGGTGCAACTTTGGTCTGTATGACGTTGATTTCGGGTGGGGAAAGCCTATATGGATGTCTTGCGTTGGTGCAGACAATGCTCCACAATCCGTGTTCATGAATTCAGTCCTTTTAACAGATACGAGGTCTCGTGATGGAGTTGAGGCCTGGATTTATCTAGGTGAACAAGAGATGGCTATATTAGAACATGATGACAGCTTTCTTGCTTTTGCTTCTATTGATCATAGTCCTCTTGAACTTGGTAACACTGTTTCTTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.89

Weight (kDa)

4.05

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 12 - 88 6.5e-14 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 163
AgsI TTSAA 1 cut(s) 299
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 2 cut(s) 63, 261
AluI AGCT 2 cut(s) 63, 261
Alw26I GTCTC 1 cut(s) 195
AlwNI CAGNNNCTG 1 cut(s) 29
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 163
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AsuHPI GGTGA 2 cut(s) 17, 236
BauI CACGAG 1 cut(s) 192
BbvI GCAGC 1 cut(s) 35
BccI CCATC 3 cut(s) 26, 191, 229
BciT130I CCWGG 1 cut(s) 211
BclI TGATCA 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 1 cut(s) 221
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 211
BmsI GCATC 2 cut(s) 10, 35
BsaI GGTCTC 1 cut(s) 195
BseBI CCWGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 123
BseXI GCAGC 1 cut(s) 35
BsgI GTGCAG 1 cut(s) 153
BshFI GGCC 1 cut(s) 209
BsmAI GTCTC 1 cut(s) 195
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 195
Bsp143I GATC 1 cut(s) 283
BspANI GGCC 1 cut(s) 209
BspHI TCATGA 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 195
BssMI GATC 1 cut(s) 283
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 313
BstAPI GCANNNNNTGC 1 cut(s) 140
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 35
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 309
CaiI CAGNNNCTG 1 cut(s) 29
CciI TCATGA 1 cut(s) 159
CviAII CATG 3 cut(s) 160, 251, 324
CviJI RGCY 5 cut(s) 63, 109, 209, 239, 261
CviKI_1 RGCY 5 cut(s) 63, 109, 209, 239, 261
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eco147I AGGCCT 1 cut(s) 209
Eco31I GGTCTC 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 209
FaeI CATG 3 cut(s) 163, 254, 327
FatI CATG 3 cut(s) 159, 250, 323
FbaI TGATCA 1 cut(s) 283
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 221
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 3 cut(s) 163, 254, 327
HphI GGTGA 2 cut(s) 17, 236
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 2 cut(s) 19, 31
Hpy188III TCNNGA 3 cut(s) 160, 194, 296
Hpy8I GTNNAC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 3 cut(s) 23, 69, 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 87
Hsp92II CATG 3 cut(s) 163, 254, 327
Ksp22I TGATCA 1 cut(s) 283
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 4 cut(s) 49, 73, 196, 223
Lsp1109I GCAGC 1 cut(s) 35
LweI GCATC 2 cut(s) 10, 35
MaeI CTAG 1 cut(s) 221
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 305
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MluCI AATT 1 cut(s) 163
MnlI CCTC 3 cut(s) 180, 199, 303
MseI TTAA 1 cut(s) 176
MspA1I CMGCKG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 1 cut(s) 283
NlaIII CATG 3 cut(s) 163, 254, 327
PagI TCATGA 1 cut(s) 159
PceI AGGCCT 1 cut(s) 209
PkrI GCNGC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 211
SetI ASST 5 cut(s) 65, 90, 191, 226, 263
SfaNI GCATC 2 cut(s) 10, 35
Sse9I AATT 1 cut(s) 163
SseBI AGGCCT 1 cut(s) 209
SspMI CTAG 1 cut(s) 221
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 90
TasI AATT 1 cut(s) 163
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 1 cut(s) 316
TseI GCWGC 1 cut(s) 23
TspDTI ATGAA 2 cut(s) 148, 176
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 1 cut(s) 316
XapI RAATTY 1 cut(s) 163
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.