Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0012439

Physical Location & Seq

Genomic Coordinates Forward (+)

68043521 .. 68046126

Gene Structure 2606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG372700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGATCATGTTCGAATTATCAGAGCGCCATCTGCACTCACCTTCTCTCCTGGGTCAAAGTTCAGTAGGGCATGGTGAGCGCTTGAGCGCGAAGGACTCCCGGCCATGCTGGAATAGTACTCCTCTGAACAGAAATGTCGCCATTTCTCAGGGAACAGAAATATTTCAACCAAGTGAAGTTTCTGGCCTTAGAAGTATAGGCGTTGCGCTAAGACTGAATCAAGAACATCATCGGATTCTTAAGGCTGTCGTCACTGAAGAAATGAACACAGGTAAGAAGAATTCAACAAGAACAAACAAGAATTTTGATCCAAATCAATCAAGCAAAAGAAGGGTGAGAAGAGGATCAGATCCTATCCACAACCGGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

123

Amino Acids

13.82

Weight (kDa)

10.82

Isoelectric Point (pI)

66.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012439)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G69588
fragaria_vesca	FvH4_5g14931
prunus_persica	Prupe.1G274800_v2.0.a1 Prupe.5G193600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0439851 RchiOBHm_Chr7g0181441
rosa_laevigata	RLG00000006234
rosa_roxburghii	Rroxscaffold_3G00272000 Rroxscaffold_5G00380750
rosa_rugosa	Rorug04G0321800 Rorug06G0441200
rosa_samantha	Rh4AG372700 Rh4BG385100 Rh4CG399500 Rh7AG043000 Rh7BG042500 Rh7CG044300 Rh7DG042900
rosa_wichuraiana	Rw4G031860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AclWI	GGATC	3 cut(s)	302, 344, 352
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	2 cut(s)	280, 301
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	118
AfeI	AGCGCT	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	167, 285
AjnI	CCWGG	1 cut(s)	48
AjuI	GAANNNNNNNTTGG	2 cut(s)	163, 195
AlwI	GGATC	3 cut(s)	302, 344, 352
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	2 cut(s)	101, 184
ApoI	RAATTY	2 cut(s)	280, 301
Asp700I	GAANNNNTTC	1 cut(s)	162
AspLEI	GCGC	4 cut(s)	27, 81, 89, 208
AsuC2I	CCSGG	2 cut(s)	100, 365
AsuHPI	GGTGA	3 cut(s)	30, 86, 346
AsuII	TTCGAA	1 cut(s)	12
BccI	CCATC	1 cut(s)	36
BciT130I	CCWGG	1 cut(s)	50
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	100, 365
BfoI	RGCGCY	2 cut(s)	28, 82
BfrI	CTTAAG	1 cut(s)	239
BmcAI	AGTACT	1 cut(s)	118
Bme1390I	CCNGG	3 cut(s)	50, 100, 365
BmrFI	CCNGG	3 cut(s)	50, 100, 365
Bpu14I	TTCGAA	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	103
BpuMI	CCSGG	2 cut(s)	100, 365
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse8I	GATNNNNATC	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMII	CTCAG	1 cut(s)	161
BseRI	GAGGAG	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	17
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	2 cut(s)	103, 186
BsiSI	CCGG	2 cut(s)	100, 364
BslI	CCNNNNNNNGG	1 cut(s)	364
BsnI	GGCC	2 cut(s)	103, 186
Bsp119I	TTCGAA	1 cut(s)	12
Bsp143I	GATC	4 cut(s)	3, 307, 344, 349
BspANI	GGCC	2 cut(s)	103, 186
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	89
BspPI	GGATC	3 cut(s)	302, 344, 352
BspT104I	TTCGAA	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	49
BssMI	GATC	4 cut(s)	3, 307, 344, 349
Bst2UI	CCWGG	1 cut(s)	50
Bst6I	CTCTTC	1 cut(s)	334
BstAFI	CTTAAG	1 cut(s)	239
BstBI	TTCGAA	1 cut(s)	12
BstDEI	CTNAG	4 cut(s)	147, 188, 209, 369
BstFNI	CGCG	1 cut(s)	89
BstH2I	RGCGCY	2 cut(s)	28, 82
BstHHI	GCGC	4 cut(s)	27, 81, 89, 208
BstKTI	GATC	4 cut(s)	6, 310, 347, 352
BstMBI	GATC	4 cut(s)	3, 307, 344, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	31, 76
BstNI	CCWGG	1 cut(s)	50
BstSCI	CCNGG	3 cut(s)	48, 98, 363
BstUI	CGCG	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	103, 186
BtsIMutI	CAGTG	1 cut(s)	252
CfoI	GCGC	4 cut(s)	27, 81, 89, 208
Csp6I	GTAC	1 cut(s)	117
CviAII	CATG	3 cut(s)	7, 71, 105
CviJI	RGCY	4 cut(s)	103, 186, 245, 368
CviKI_1	RGCY	4 cut(s)	103, 186, 245, 368
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	4 cut(s)	147, 188, 209, 369
DpnI	GATC	4 cut(s)	5, 309, 346, 351
DpnII	GATC	4 cut(s)	3, 307, 344, 349
EaeI	YGGCCR	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco47III	AGCGCT	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	276
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	48
FaeI	CATG	3 cut(s)	10, 74, 108
FaiI	YATR	4 cut(s)	8, 72, 106, 197
FatI	CATG	3 cut(s)	6, 70, 104
FbaI	TGATCA	1 cut(s)	3
GlaI	GCGC	4 cut(s)	26, 80, 88, 207
HaeII	RGCGCY	2 cut(s)	28, 82
HaeIII	GGCC	2 cut(s)	103, 186
HapII	CCGG	2 cut(s)	100, 364
HhaI	GCGC	4 cut(s)	27, 81, 89, 208
Hin1II	CATG	3 cut(s)	10, 74, 108
Hin6I	GCGC	4 cut(s)	25, 79, 87, 206
HinP1I	GCGC	4 cut(s)	25, 79, 87, 206
HinfI	GANTC	3 cut(s)	95, 217, 235
HpaII	CCGG	2 cut(s)	100, 364
HphI	GGTGA	3 cut(s)	30, 86, 346
Hpy188I	TCNGA	4 cut(s)	22, 126, 234, 349
Hpy188III	TCNNGA	1 cut(s)	221
HpyAV	CCTTC	3 cut(s)	51, 85, 324
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	31, 76
HpyF3I	CTNAG	4 cut(s)	147, 188, 209, 369
Hsp92II	CATG	3 cut(s)	10, 74, 108
HspAI	GCGC	4 cut(s)	25, 79, 87, 206
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 307, 344, 349
LpnPI	CCDG	7 cut(s)	35, 62, 94, 113, 134, 168, 255
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	4 cut(s)	5, 309, 346, 351
MboI	GATC	4 cut(s)	3, 307, 344, 349
MboII	GAAGA	3 cut(s)	269, 289, 351
MflI	RGATCY	1 cut(s)	349
MluCI	AATT	3 cut(s)	14, 280, 301
MlyI	GAGTC	1 cut(s)	89
MnlI	CCTC	2 cut(s)	132, 335
MroXI	GAANNNNTTC	1 cut(s)	162
MseI	TTAA	1 cut(s)	240
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	2 cut(s)	100, 364
MspR9I	CCNGG	3 cut(s)	50, 100, 365
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	2 cut(s)	31, 76
NciI	CCSGG	2 cut(s)	100, 365
NdeII	GATC	4 cut(s)	3, 307, 344, 349
NlaIII	CATG	3 cut(s)	10, 74, 108
NmuCI	GTSAC	1 cut(s)	250
NspV	TTCGAA	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	217, 235
PleI	GAGTC	1 cut(s)	89
PpsI	GAGTC	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PsuI	RGATCY	1 cut(s)	349
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	4 cut(s)	3, 307, 344, 349
ScaI	AGTACT	1 cut(s)	118
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	3 cut(s)	50, 100, 365
SetI	ASST	2 cut(s)	43, 274
SfuI	TTCGAA	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	82, 239
SmoI	CTYRAG	2 cut(s)	82, 239
Sse9I	AATT	3 cut(s)	14, 280, 301
SspI	AATATT	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	48, 98, 363
TaqI	TCGA	1 cut(s)	12
TasI	AATT	3 cut(s)	14, 280, 301
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	217, 235
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	259
Vha464I	CTTAAG	1 cut(s)	239
XapI	RAATTY	2 cut(s)	280, 301
XmnI	GAANNNNTTC	1 cut(s)	162
ZrmI	AGTACT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.