Prupe.1G316600_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0021067
Physical Location & Seq
Reverse (-)
30515672 .. 30516529
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G316600.1_v2.0.a1.CDS.2

Sequence Viewer

Length: 537 bp
ATGTCCATGGGTAGAGGAGCTCTGTACCAGGCTTCAAATTTGTCCATGGCTGGGATGCAAAGCACACAAACACCCCAATTCATGTCGTATGTGCCCATGGGAACGAGCAATGCGTATGGAATGGGAATGGGAATGGGAATGGTTAATATGTGCTACTCAACAACAGGCCTTCCAATCATGTCCGTTCCCTCAGCCCGCTTCAATCCATTACAGCCAGCAACTGCAGGGTTCCCTCTAATGTCTGCACCAGGAGTTCTTCCTGTTAATCCCCAACTGCAAATGCCGATGCCATTCGTTGCTTCGCAAGTAATGCCTACAGCCACTACCACATCCAGGTCCATAAATATGGGTCGGCCGCAATTTGCTACAGATTTCTCTCACACATTCAACTATGCAAACCAAGGAGAGTCTAGTTTCCAAAACTATACAAACAACGCAGCTTCTGCTGACAACCAGAGAGTGCCAATTATAAGCAAGAAATCTAAGGTGCTGGCTAGTCACGTGGTAACACCCCCTTCATCAGTCAGTGACAAGTAG

Protein Analysis

179

Amino Acids

18.95

Weight (kDa)

9.66

Isoelectric Point (pI)

52.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021067)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g26741
prunus_persica Prupe.1G316600_v2.0.a1
rosa_laevigata RLG00000023290
rosa_samantha Rh3CG288000 Rh3DG283800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 470
AciI CCGC 2 cut(s) 196, 356
AcoI YGGCCR 1 cut(s) 353
AcsI RAATTY 1 cut(s) 37
AcvI CACGTG 1 cut(s) 502
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 51, 333
AgsI TTSAA 3 cut(s) 36, 202, 388
AjnI CCWGG 3 cut(s) 27, 247, 332
AluBI AGCT 2 cut(s) 20, 440
AluI AGCT 2 cut(s) 20, 440
Alw21I GWGCWC 1 cut(s) 22
AlwNI CAGNNNCTG 2 cut(s) 221, 443
AoxI GGCC 2 cut(s) 166, 353
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 336
AvaII GGWCC 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 96
BanII GRGCYC 1 cut(s) 22
BbrPI CACGTG 1 cut(s) 502
Bbv12I GWGCWC 1 cut(s) 22
BbvCI CCTCAGC 1 cut(s) 190
BbvI GCAGC 1 cut(s) 449
BciT130I CCWGG 3 cut(s) 29, 249, 334
BfaI CTAG 2 cut(s) 411, 495
BfmI CTRYAG 3 cut(s) 222, 315, 366
BisI GCNGC 2 cut(s) 356, 438
BlsI GCNGC 2 cut(s) 357, 439
Bme1390I CCNGG 3 cut(s) 29, 249, 334
Bme18I GGWCC 1 cut(s) 336
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 3 cut(s) 29, 249, 334
BmsI GCATC 2 cut(s) 45, 276
Bpu10I CCTNAGC 1 cut(s) 190
BsaAI YACGTR 1 cut(s) 502
BsaJI CCNNGG 4 cut(s) 6, 45, 96, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 333
Bse3DI GCAATG 1 cut(s) 115
BseBI CCWGG 3 cut(s) 29, 249, 334
BseDI CCNNGG 4 cut(s) 6, 45, 96, 400
BseGI GGATG 2 cut(s) 60, 329
BseLI CCNNNNNNNGG 2 cut(s) 51, 333
BseMI GCAATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 96
BseX3I CGGCCG 1 cut(s) 353
BseXI GCAGC 1 cut(s) 449
BseYI CCCAGC 1 cut(s) 50
BsgI GTGCAG 1 cut(s) 228
Bsh1285I CGRYCG 1 cut(s) 356
BshFI GGCC 2 cut(s) 168, 355
BsiEI CGRYCG 1 cut(s) 356
BsiHKAI GWGCWC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 51, 333
BsnI GGCC 2 cut(s) 168, 355
Bsp1286I GDGCHC 2 cut(s) 22, 96
Bsp19I CCATGG 3 cut(s) 6, 45, 96
BspACI CCGC 2 cut(s) 196, 356
BspANI GGCC 2 cut(s) 168, 355
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 230
BspMAI CTGCAG 1 cut(s) 226
BsrDI GCAATG 1 cut(s) 115
BssECI CCNNGG 4 cut(s) 6, 45, 96, 400
BssT1I CCWWGG 4 cut(s) 6, 45, 96, 400
Bst2UI CCWGG 3 cut(s) 29, 249, 334
BstAPI GCANNNNNTGC 2 cut(s) 310, 443
BstBAI YACGTR 1 cut(s) 502
BstC8I GCNNGC 3 cut(s) 196, 216, 492
BstDEI CTNAG 2 cut(s) 190, 483
BstDSI CCRYGG 3 cut(s) 6, 45, 96
BstF5I GGATG 2 cut(s) 60, 329
BstMCI CGRYCG 1 cut(s) 356
BstMWI GCNNNNNNNGC 2 cut(s) 310, 443
BstNI CCWGG 3 cut(s) 29, 249, 334
BstSCI CCNGG 3 cut(s) 27, 247, 332
BstSFI CTRYAG 3 cut(s) 222, 315, 366
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 449
BstXI CCANNNNNNTGG 1 cut(s) 346
BstZI CGGCCG 1 cut(s) 353
BsuRI GGCC 2 cut(s) 168, 355
BtgI CCRYGG 3 cut(s) 6, 45, 96
BtsCI GGATG 2 cut(s) 60, 329
BtsIMutI CAGTG 1 cut(s) 532
Cac8I GCNNGC 3 cut(s) 196, 216, 492
CaiI CAGNNNCTG 2 cut(s) 221, 443
Cfr13I GGNCC 1 cut(s) 336
Csp6I GTAC 1 cut(s) 25
CviAII CATG 5 cut(s) 7, 46, 82, 97, 178
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 2 cut(s) 190, 483
EaeI YGGCCR 1 cut(s) 353
EagI CGGCCG 1 cut(s) 353
Ecl136II GAGCTC 1 cut(s) 20
EclXI CGGCCG 1 cut(s) 353
Eco130I CCWWGG 4 cut(s) 6, 45, 96, 400
Eco147I AGGCCT 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 22
Eco47I GGWCC 1 cut(s) 336
Eco52I CGGCCG 1 cut(s) 353
Eco53kI GAGCTC 1 cut(s) 20
Eco72I CACGTG 1 cut(s) 502
EcoICRI GAGCTC 1 cut(s) 20
EcoRII CCWGG 3 cut(s) 27, 247, 332
EcoT14I CCWWGG 4 cut(s) 6, 45, 96, 400
EcoT38I GRGCYC 1 cut(s) 22
ErhI CCWWGG 4 cut(s) 6, 45, 96, 400
FaeI CATG 5 cut(s) 10, 49, 85, 100, 181
FatI CATG 5 cut(s) 6, 45, 81, 96, 177
FauI CCCGC 1 cut(s) 203
Fnu4HI GCNGC 2 cut(s) 356, 438
FokI GGATG 2 cut(s) 67, 316
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 2 cut(s) 356, 438
FspBI CTAG 2 cut(s) 411, 495
GluI GCNGC 2 cut(s) 356, 438
GsaI CCCAGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 168, 355
Hin1II CATG 5 cut(s) 10, 49, 85, 100, 181
HinfI GANTC 1 cut(s) 407
HpyAV CCTTC 2 cut(s) 179, 525
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 5 cut(s) 58, 224, 245, 277, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 310, 443
HpyF3I CTNAG 2 cut(s) 190, 483
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 5 cut(s) 10, 49, 85, 100, 181
LmnI GCTCC 1 cut(s) 17
Lsp1109I GCAGC 1 cut(s) 449
LweI GCATC 2 cut(s) 45, 276
MaeI CTAG 2 cut(s) 411, 495
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 3 cut(s) 497, 505, 527
MboII GAAGA 1 cut(s) 248
MhlI GDGCHC 2 cut(s) 22, 96
MluCI AATT 4 cut(s) 37, 77, 359, 465
MlyI GAGTC 1 cut(s) 416
MnlI CCTC 3 cut(s) 8, 199, 243
MseI TTAA 2 cut(s) 144, 264
MslI CAYNNNNRTG 1 cut(s) 344
MspR9I CCNGG 3 cut(s) 29, 249, 334
MvaI CCWGG 3 cut(s) 29, 249, 334
MwoI GCNNNNNNNGC 2 cut(s) 310, 443
NcoI CCATGG 3 cut(s) 6, 45, 96
NlaIII CATG 5 cut(s) 10, 49, 85, 100, 181
NlaIV GGNNCC 1 cut(s) 230
NmuCI GTSAC 2 cut(s) 497, 527
PceI AGGCCT 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PkrI GCNGC 2 cut(s) 357, 439
PleI GAGTC 1 cut(s) 415
PmaCI CACGTG 1 cut(s) 502
PmlI CACGTG 1 cut(s) 502
PpsI GAGTC 1 cut(s) 415
Ppu21I YACGTR 1 cut(s) 502
PsiI TTATAA 1 cut(s) 470
Psp124BI GAGCTC 1 cut(s) 22
Psp6I CCWGG 3 cut(s) 27, 247, 332
PspCI CACGTG 1 cut(s) 502
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 3 cut(s) 27, 247, 332
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 336
PstI CTGCAG 1 cut(s) 226
PstNI CAGNNNCTG 2 cut(s) 221, 443
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
RseI CAYNNNNRTG 1 cut(s) 344
SacI GAGCTC 1 cut(s) 22
SaqAI TTAA 2 cut(s) 144, 264
SatI GCNGC 2 cut(s) 356, 438
Sau96I GGNCC 1 cut(s) 336
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 3 cut(s) 29, 249, 334
SduI GDGCHC 2 cut(s) 22, 96
SetI ASST 5 cut(s) 22, 338, 442, 489, 504
SfaNI GCATC 2 cut(s) 45, 276
SfcI CTRYAG 3 cut(s) 222, 315, 366
SinI GGWCC 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 4 cut(s) 37, 77, 359, 465
SseBI AGGCCT 1 cut(s) 168
SsiI CCGC 2 cut(s) 196, 356
SspMI CTAG 2 cut(s) 411, 495
SstI GAGCTC 1 cut(s) 22
StuI AGGCCT 1 cut(s) 168
StyD4I CCNGG 3 cut(s) 27, 247, 332
StyI CCWWGG 4 cut(s) 6, 45, 96, 400
TaiI ACGT 1 cut(s) 504
TasI AATT 4 cut(s) 37, 77, 359, 465
TauI GCSGC 1 cut(s) 358
Tru1I TTAA 2 cut(s) 144, 264
Tru9I TTAA 2 cut(s) 144, 264
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 2 cut(s) 497, 527
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 2 cut(s) 497, 527
TspDTI ATGAA 2 cut(s) 70, 507
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 336
XapI RAATTY 1 cut(s) 37
XspI CTAG 2 cut(s) 411, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.