Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006959

Physical Location & Seq

Genomic Coordinates Forward (+)

31221942 .. 31223208

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G328900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGATGAGGGACATACCAAGCCTATCCTTTCTGTGTGCTGGGATCCATCTGGTGAGTTCCTTGCATCAGTCAAATTATACATGGTCACCCTATAAGGTTAGAGCATACTTACAGCGTCAATGGAAGCAGATTCTATCTGGAAGGGTGTCTCTTCAGGATTTTGTATCTGCAAAGGAGGTTCGCCTAGGCACCTACTGTGAGTGTATCTATTTTTCTGTTCTTATTTCATTACTGTTTGTCATGTATTGTCTTCTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0000228 GO:0000731 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003887 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016035 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0019985 GO:0031974 GO:0031981 GO:0032042 GO:0032991 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042276 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043504 GO:0043596 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0070987 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko01100 ko01524 ko03460 map01100 map01524 map03460

Pfam Domains

Protein Families

DNA_pol_B DNA_pol_B_exo1 zf-C4pol

Protein Analysis

87

Amino Acids

10.02

Weight (kDa)

9.05

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006959)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G328900_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.4G277100_v2.0.a1 Prupe.6G008100_v2.0.a1 Prupe.6G008100_v2.0.a1 Prupe.6G008100_v2.0.a1 Prupe.6G008100_v2.0.a1 Prupe.6G008100_v2.0.a1 Prupe.6G025200_v2.0.a1 Prupe.6G025200_v2.0.a1 Prupe.6G025200_v2.0.a1 Prupe.6G025200_v2.0.a1

Species

Orthologous Gene IDs

prunus_persica

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	188
AclWI	GGATC	2 cut(s)	37, 50
AcuI	CTGAAG	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	2 cut(s)	37, 50
AspA2I	CCTAGG	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	64, 78
AvrII	CCTAGG	1 cut(s)	184
BamHI	GGATCC	1 cut(s)	42
BanI	GGYRCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	242
BccI	CCATC	1 cut(s)	54
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	185
BlnI	CCTAGG	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	44, 190
BmsI	GCATC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	184
BseYI	CCCAGC	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	42
BspLI	GGNNCC	2 cut(s)	44, 190
BspPI	GGATC	2 cut(s)	37, 50
BspT107I	GGYRCC	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	184
Bst4CI	ACNGT	2 cut(s)	197, 234
Bst6I	CTCTTC	1 cut(s)	156
BstEII	GGTNACC	1 cut(s)	84
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	42
BstPI	GGTNACC	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
CseI	GACGC	1 cut(s)	104
CviAII	CATG	2 cut(s)	81, 241
CviJI	RGCY	1 cut(s)	21
CviKI_1	RGCY	1 cut(s)	21
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	184
Eco57I	CTGAAG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	84
EcoO65I	GGTNACC	1 cut(s)	84
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	2 cut(s)	84, 244
FaiI	YATR	6 cut(s)	14, 78, 82, 93, 106, 242
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	80, 240
FspBI	CTAG	1 cut(s)	185
GsaI	CCCAGC	1 cut(s)	42
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	2 cut(s)	84, 244
HinfI	GANTC	1 cut(s)	130
HphI	GGTGA	2 cut(s)	64, 78
Hpy188III	TCNNGA	2 cut(s)	138, 155
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	2 cut(s)	197, 234
HpyCH4V	TGCA	2 cut(s)	64, 170
Hsp92II	CATG	2 cut(s)	84, 244
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	4 cut(s)	24, 35, 123, 140
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	84
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	2 cut(s)	143, 242
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	1 cut(s)	73
MnlI	CCTC	1 cut(s)	169
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	2 cut(s)	84, 244
NlaIV	GGNNCC	2 cut(s)	44, 190
NmuCI	GTSAC	1 cut(s)	84
PfeI	GAWTC	1 cut(s)	130
PspEI	GGTNACC	1 cut(s)	84
PspFI	CCCAGC	1 cut(s)	38
PspN4I	GGNNCC	2 cut(s)	44, 190
PsuI	RGATCY	1 cut(s)	42
Sau3AI	GATC	1 cut(s)	42
SetI	ASST	3 cut(s)	99, 180, 194
SfaNI	GCATC	1 cut(s)	73
SgeI	CNNG	9 cut(s)	30, 51, 62, 73, 93, 150, 167, 197, 253
Sse9I	AATT	1 cut(s)	73
SspMI	CTAG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	197, 234
TasI	AATT	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	84
Tsp45I	GTSAC	1 cut(s)	84
TspDTI	ATGAA	1 cut(s)	216
XmaJI	CCTAGG	1 cut(s)	184
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.