Prupe.4G277100_v2.0.a1

DNA polymerase activity

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
23151169 .. 23152940
1772 bp
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UTR
Exon/CDS
Intron
Prupe.4G277100.4

Sequence Viewer

Length: 480 bp
ATGTCTCTGTTTTATTTTTTTTTTGGTATAAATTATCATATGGGTTTTTGGTATTTCGTAAATGTCTTTCAATTTTCAAGGCATGTGGTCTTTTCTATTGTTAATTTGTCACTTTTTGTTTCAGATTTCATTTGGGTAGCAGAGAAAATGCATATTTGTCAATTGTGCATTTTACTTGCGGTGATTTGGTTGTACAGGTTCTGTCATGAAGCATCAACTATGATGAGGGACATACCAAGCCTATCCTTTCTGTGTGCTGGGATCTATCTGGTGAGTTCCTTGCATCAGTCAAATTATACATGGTCATCCTATAAGGTTAGAGCATACTTACAGCGTCAATGGAAGCAGATTCTATCTGGAAGGGTGTCTCTTCAGGATTTTGTATCTGCAAAGGAGGTTTGCCTAGGCACCTACCGTGCGTGTATCTATTTTTCTGTTCTTATTTCATTACTGTCTGTCATGTATTGTCTTCTTACTTGA

Protein Analysis

160

Amino Acids

18.77

Weight (kDa)

8.87

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 407
AciI CCGC 1 cut(s) 179
AclWI GGATC 1 cut(s) 269
AcuI CTGAAG 1 cut(s) 356
AfaI GTAC 1 cut(s) 194
AgsI TTSAA 2 cut(s) 71, 78
Alw26I GTCTC 2 cut(s) 9, 372
AlwI GGATC 1 cut(s) 269
AlwNI CAGNNNCTG 1 cut(s) 201
AspA2I CCTAGG 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 193, 283
AvrII CCTAGG 1 cut(s) 403
BanI GGYRCC 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 461
BcoDI GTCTC 2 cut(s) 9, 372
BfaI CTAG 1 cut(s) 404
BlnI CCTAGG 1 cut(s) 403
BmiI GGNNCC 1 cut(s) 409
BmsI GCATC 2 cut(s) 221, 292
BpiI GAAGAC 1 cut(s) 461
BsaJI CCNNGG 1 cut(s) 403
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 1 cut(s) 305
BseYI CCCAGC 1 cut(s) 257
BshNI GGYRCC 1 cut(s) 407
BslFI GGGAC 1 cut(s) 242
BsmAI GTCTC 2 cut(s) 9, 372
BsmFI GGGAC 1 cut(s) 242
Bsp1407I TGTACA 1 cut(s) 192
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 1 cut(s) 179
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 409
BspPI GGATC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 407
BsrGI TGTACA 1 cut(s) 192
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 403
Bst4CI ACNGT 2 cut(s) 416, 453
Bst6I CTCTTC 1 cut(s) 375
BstAUI TGTACA 1 cut(s) 192
BstF5I GGATG 1 cut(s) 305
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 2 cut(s) 9, 372
BstMBI GATC 1 cut(s) 261
BstNSI RCATGY 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 461
BstX2I RGATCY 1 cut(s) 261
BstYI RGATCY 1 cut(s) 261
BtsCI GGATG 1 cut(s) 305
CaiI CAGNNNCTG 1 cut(s) 201
CciI TCATGA 1 cut(s) 205
CseI GACGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 193
CspCI CAANNNNNGTGG 2 cut(s) 66, 101
CviAII CATG 4 cut(s) 83, 206, 300, 460
CviJI RGCY 1 cut(s) 240
CviKI_1 RGCY 1 cut(s) 240
CviQI GTAC 1 cut(s) 193
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 403
EcoT22I ATGCAT 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 403
FaeI CATG 4 cut(s) 86, 209, 303, 463
FaqI GGGAC 1 cut(s) 242
FatI CATG 4 cut(s) 82, 205, 299, 459
FauNDI CATATG 1 cut(s) 39
FokI GGATG 1 cut(s) 292
FspBI CTAG 1 cut(s) 404
GsaI CCCAGC 1 cut(s) 261
HgaI GACGC 1 cut(s) 323
Hin1II CATG 4 cut(s) 86, 209, 303, 463
HinfI GANTC 1 cut(s) 349
HphI GGTGA 2 cut(s) 193, 283
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 206, 357, 374
HpyAV CCTTC 1 cut(s) 354
HpyCH4III ACNGT 2 cut(s) 416, 453
HpyCH4V TGCA 4 cut(s) 151, 168, 283, 389
Hsp92II CATG 4 cut(s) 86, 209, 303, 463
Kzo9I GATC 1 cut(s) 261
LpnPI CCDG 5 cut(s) 181, 243, 254, 342, 359
LweI GCATC 2 cut(s) 221, 292
MaeI CTAG 1 cut(s) 404
MaeIII GTNAC 1 cut(s) 108
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 2 cut(s) 362, 461
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 1 cut(s) 261
MluCI AATT 5 cut(s) 31, 71, 103, 161, 292
MnlI CCTC 2 cut(s) 219, 388
Mph1103I ATGCAT 1 cut(s) 153
MseI TTAA 1 cut(s) 102
MunI CAATTG 1 cut(s) 161
NdeI CATATG 1 cut(s) 39
NdeII GATC 1 cut(s) 261
NlaIII CATG 4 cut(s) 86, 209, 303, 463
NlaIV GGNNCC 1 cut(s) 409
NmuCI GTSAC 1 cut(s) 108
NsiI ATGCAT 1 cut(s) 153
NspI RCATGY 1 cut(s) 86
PagI TCATGA 1 cut(s) 205
PfeI GAWTC 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 201
PsuI RGATCY 1 cut(s) 261
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SaqAI TTAA 1 cut(s) 102
Sau3AI GATC 1 cut(s) 261
SetI ASST 4 cut(s) 200, 318, 399, 413
SfaNI GCATC 2 cut(s) 221, 292
Sse9I AATT 5 cut(s) 31, 71, 103, 161, 292
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 404
StyI CCWWGG 1 cut(s) 403
TaaI ACNGT 2 cut(s) 416, 453
TasI AATT 5 cut(s) 31, 71, 103, 161, 292
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 1 cut(s) 349
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 1 cut(s) 108
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 3 cut(s) 118, 222, 435
XceI RCATGY 1 cut(s) 86
XmaJI CCTAGG 1 cut(s) 403
XspI CTAG 1 cut(s) 404
Zsp2I ATGCAT 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.