Prupe.1G332900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0021246
Physical Location & Seq
Forward (+)
31531266 .. 31531676
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G332900.1

Sequence Viewer

Length: 387 bp
ATGACCTTAAACTCCTCAAAATTGATCATACCGTCGCCATCGCTGTCGACCGCACTGATCATCTTCTTGCACTCAGCGATCGAACACTCGTCCCCCAAGCTCCTCAGCACTTTATACAATTCCTCGGCCGAAATCGACCCATTCCCATCAATGTCATTCTCCAGCGCCTCGGCCTGGTCGACCCCGTTGGTGTTGAGCTCGACGAACTCTTTGAAGTCGATGAAGCCATCGCCGTCGGAATCGACCTCTAAGATCATGTGGCTGAGCTCCTCTTCGTTGGCCGGCTGGCCCAGGCTGCTCATGATGGCTCCGAGCTCGGAAGACGAGATCTTGCCGTCGCCATTGACGTCGAATTTCTTGAAGACCTGGTCGAGTTCGGCGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.72

Weight (kDa)

6.71

Isoelectric Point (pI)

67.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021246)

Species Orthologous Gene IDs
prunus_persica Prupe.1G332900_v2.0.a1
pyrus_communis pycom06g13320 pycom111g01150 pycom17g01130
rosa_samantha Rh3AG309900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 350
AccI GTMKAC 2 cut(s) 47, 179
AciI CCGC 1 cut(s) 51
AcoI YGGCCR 2 cut(s) 126, 279
AcsI RAATTY 1 cut(s) 352
AcyI GRCGYC 1 cut(s) 347
AfiI CCNNNNNNNGG 1 cut(s) 174
AgsI TTSAA 2 cut(s) 214, 361
AjnI CCWGG 3 cut(s) 173, 290, 365
AluBI AGCT 4 cut(s) 100, 198, 267, 315
AluI AGCT 4 cut(s) 100, 198, 267, 315
Alw21I GWGCWC 3 cut(s) 200, 269, 317
AoxI GGCC 4 cut(s) 126, 171, 279, 287
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 1 cut(s) 352
ArsI GACNNNNNNTTYG 2 cut(s) 193, 225
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 288
BanII GRGCYC 3 cut(s) 200, 269, 317
BbsI GAAGAC 2 cut(s) 327, 368
Bbv12I GWGCWC 3 cut(s) 200, 269, 317
BbvCI CCTCAGC 1 cut(s) 104
BbvI GCAGC 1 cut(s) 282
BccI CCATC 4 cut(s) 46, 154, 235, 298
BceAI ACGGC 2 cut(s) 217, 319
BciT130I CCWGG 3 cut(s) 175, 292, 367
BclI TGATCA 2 cut(s) 24, 57
BfoI RGCGCY 1 cut(s) 168
BglII AGATCT 1 cut(s) 327
BisI GCNGC 1 cut(s) 296
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 3 cut(s) 175, 292, 367
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 3 cut(s) 175, 292, 367
BpiI GAAGAC 2 cut(s) 327, 368
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 104
Bpu1102I GCTNAGC 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 123, 168, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 174
Bse118I RCCGGY 1 cut(s) 281
BseBI CCWGG 3 cut(s) 175, 292, 367
BseDI CCNNGG 3 cut(s) 123, 168, 290
BseLI CCNNNNNNNGG 1 cut(s) 174
BseMII CTCAG 3 cut(s) 87, 118, 254
BseRI GAGGAG 3 cut(s) 4, 92, 259
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 282
Bsh1285I CGRYCG 3 cut(s) 51, 81, 129
BshFI GGCC 4 cut(s) 128, 173, 281, 289
BsiEI CGRYCG 3 cut(s) 51, 81, 129
BsiHKAI GWGCWC 3 cut(s) 200, 269, 317
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 4 cut(s) 128, 173, 281, 289
Bsp1286I GDGCHC 3 cut(s) 200, 269, 317
Bsp143I GATC 6 cut(s) 24, 57, 78, 252, 327, 381
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 1 cut(s) 51
BspANI GGCC 4 cut(s) 128, 173, 281, 289
BspCNI CTCAG 3 cut(s) 86, 117, 255
BspHI TCATGA 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 281
BssAI RCCGGY 1 cut(s) 281
BssECI CCNNGG 3 cut(s) 123, 168, 290
BssMI GATC 6 cut(s) 24, 57, 78, 252, 327, 381
BssNI GRCGYC 1 cut(s) 347
Bst2UI CCWGG 3 cut(s) 175, 292, 367
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 277
BstACI GRCGYC 1 cut(s) 347
BstC8I GCNNGC 2 cut(s) 283, 287
BstDEI CTNAG 4 cut(s) 73, 104, 249, 263
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 6 cut(s) 27, 60, 81, 255, 330, 384
BstMBI GATC 6 cut(s) 24, 57, 78, 252, 327, 381
BstMCI CGRYCG 3 cut(s) 51, 81, 129
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 3 cut(s) 175, 292, 367
BstSCI CCNGG 3 cut(s) 173, 290, 365
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 2 cut(s) 327, 368
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BstZI CGGCCG 1 cut(s) 126
BsuRI GGCC 4 cut(s) 128, 173, 281, 289
BtgZI GCGATG 2 cut(s) 24, 213
BtsIMutI CAGTG 1 cut(s) 53
Cac8I GCNNGC 2 cut(s) 283, 287
CciI TCATGA 1 cut(s) 300
CfoI GCGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 281
Cfr13I GGNCC 1 cut(s) 288
CsiI ACCWGGT 1 cut(s) 365
CviAII CATG 2 cut(s) 256, 301
DdeI CTNAG 4 cut(s) 73, 104, 249, 263
DpnI GATC 6 cut(s) 26, 59, 80, 254, 329, 383
DpnII GATC 6 cut(s) 24, 57, 78, 252, 327, 381
EaeI YGGCCR 2 cut(s) 126, 279
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 1 cut(s) 277
EarI CTCTTC 1 cut(s) 277
Ecl136II GAGCTC 3 cut(s) 198, 267, 315
EclXI CGGCCG 1 cut(s) 126
Eco24I GRGCYC 3 cut(s) 200, 269, 317
Eco52I CGGCCG 1 cut(s) 126
Eco53kI GAGCTC 3 cut(s) 198, 267, 315
EcoICRI GAGCTC 3 cut(s) 198, 267, 315
EcoRII CCWGG 3 cut(s) 173, 290, 365
EcoT38I GRGCYC 3 cut(s) 200, 269, 317
FaeI CATG 2 cut(s) 259, 304
FaiI YATR 4 cut(s) 29, 115, 257, 302
FaqI GGGAC 1 cut(s) 76
FatI CATG 2 cut(s) 255, 300
FbaI TGATCA 2 cut(s) 24, 57
FblI GTMKAC 2 cut(s) 47, 179
Fnu4HI GCNGC 1 cut(s) 296
FriOI GRGCYC 3 cut(s) 200, 269, 317
Fsp4HI GCNGC 1 cut(s) 296
GlaI GCGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 296
GsuI CTGGAG 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 4 cut(s) 128, 173, 281, 289
HapII CCGG 1 cut(s) 282
HhaI GCGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 2 cut(s) 259, 304
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HincII GTYRAC 2 cut(s) 48, 180
HindII GTYRAC 2 cut(s) 48, 180
HinfI GANTC 1 cut(s) 239
HpaII CCGG 1 cut(s) 282
Hpy166II GTNNAC 2 cut(s) 48, 180
Hpy188I TCNGA 4 cut(s) 238, 312, 319, 386
Hpy188III TCNNGA 2 cut(s) 301, 358
Hpy8I GTNNAC 2 cut(s) 48, 180
Hpy99I CGWCG 5 cut(s) 37, 205, 238, 340, 352
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 4 cut(s) 73, 104, 249, 263
HpySE526I ACGT 1 cut(s) 347
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 2 cut(s) 259, 304
HspAI GCGC 1 cut(s) 165
KroI GCCGGC 1 cut(s) 281
KroNI GCCGGC 1 cut(s) 283
Ksp22I TGATCA 2 cut(s) 24, 57
Kzo9I GATC 6 cut(s) 24, 57, 78, 252, 327, 381
LmnI GCTCC 3 cut(s) 105, 272, 313
LpnPI CCDG 9 cut(s) 160, 175, 187, 271, 277, 295, 304, 352, 379
Lsp1109I GCAGC 1 cut(s) 282
MabI ACCWGGT 1 cut(s) 365
MaeII ACGT 1 cut(s) 347
MalI GATC 6 cut(s) 26, 59, 80, 254, 329, 383
MboI GATC 6 cut(s) 24, 57, 78, 252, 327, 381
MboII GAAGA 4 cut(s) 55, 264, 332, 373
MflI RGATCY 1 cut(s) 327
MhlI GDGCHC 3 cut(s) 200, 269, 317
MluCI AATT 3 cut(s) 20, 118, 352
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 6 cut(s) 25, 113, 133, 178, 256, 280
MroNI GCCGGC 1 cut(s) 281
MseI TTAA 1 cut(s) 8
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 3 cut(s) 175, 292, 367
MvaI CCWGG 3 cut(s) 175, 292, 367
MwoI GCNNNNNNNGC 1 cut(s) 295
NaeI GCCGGC 1 cut(s) 283
NdeII GATC 6 cut(s) 24, 57, 78, 252, 327, 381
NgoMIV GCCGGC 1 cut(s) 281
NlaIII CATG 2 cut(s) 259, 304
NlaIV GGNNCC 1 cut(s) 309
NmeAIII GCCGAG 2 cut(s) 104, 149
PagI TCATGA 1 cut(s) 300
PcsI WCGNNNNNNNCGW 3 cut(s) 176, 344, 377
PdiI GCCGGC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 239
PflFI GACNNNGTC 1 cut(s) 367
PkrI GCNGC 1 cut(s) 297
Ple19I CGATCG 1 cut(s) 81
Psp124BI GAGCTC 3 cut(s) 200, 269, 317
Psp6I CCWGG 3 cut(s) 173, 290, 365
PspGI CCWGG 3 cut(s) 173, 290, 365
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 1 cut(s) 288
PsuI RGATCY 1 cut(s) 327
PsyI GACNNNGTC 1 cut(s) 367
PvuI CGATCG 1 cut(s) 81
SacI GAGCTC 3 cut(s) 200, 269, 317
SalI GTCGAC 2 cut(s) 46, 178
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 6 cut(s) 24, 57, 78, 252, 327, 381
Sau96I GGNCC 1 cut(s) 288
ScrFI CCNGG 3 cut(s) 175, 292, 367
SduI GDGCHC 3 cut(s) 200, 269, 317
SetI ASST 8 cut(s) 8, 102, 200, 248, 269, 317, 350, 368
SexAI ACCWGGT 1 cut(s) 365
Sse9I AATT 3 cut(s) 20, 118, 352
SsiI CCGC 1 cut(s) 51
SstI GAGCTC 3 cut(s) 200, 269, 317
StyD4I CCNGG 3 cut(s) 173, 290, 365
TaaI ACNGT 1 cut(s) 33
TaiI ACGT 1 cut(s) 350
TaqI TCGA 9 cut(s) 47, 81, 135, 179, 200, 218, 242, 350, 371
TasI AATT 3 cut(s) 20, 118, 352
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TscAI CASTG 1 cut(s) 60
TseI GCWGC 1 cut(s) 295
TspDTI ATGAA 1 cut(s) 236
TspRI CASTG 1 cut(s) 60
Tth111I GACNNNGTC 1 cut(s) 367
XapI RAATTY 1 cut(s) 352
XmiI GTMKAC 2 cut(s) 47, 179
ZraI GACGTC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.