pycom111g01150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0021246
Physical Location & Seq
Forward (+)
727014 .. 727505
492 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01150.1

Sequence Viewer

Length: 492 bp
ATGAATGAACAATTTACAAAAGTAGCAAAAACAAACCAAAATCACACTTCATACACCATCATTCAAAGCATCATGACCTTAAACTCATCAAAATTGAGCACCCCATCACCGTTGAGATCAAACCTCGCAATCATGCTCTTGCACTCGTCGACGCTCTTGGACTCGCCGAGTCGACTCAACAACCTCTTAAGACTCTTGGGCGTAATGCACCCACTCCCGTCCATCACGTACATCTTAAAAGCCTCACTCAAAACACACACCTTCTCTTCGTCGCATCCTCCGTCGACAAACTTGACAAAATCATCCAACCCCAGCAGCTCGTCGCCGTCTGAGTCCAGGTACTCCACCGCCACCTCCGCCTCTGTCAGCGAGAGCTCACCGCCTATCGCTCCGGCACATTGTTGCAGCTCCATAGGAGATATCTTTCCGTCTCCGTTGCCATCAAATTGCTTGAAAACGCGCTCGTATTGTGCTACTTTCTCCATTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.51

Weight (kDa)

9.55

Isoelectric Point (pI)

71.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021246)

Species Orthologous Gene IDs
prunus_persica Prupe.1G332900_v2.0.a1
pyrus_communis pycom06g13320 pycom111g01150 pycom17g01130
rosa_samantha Rh3AG309900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 149, 172, 284
AccII CGCG 1 cut(s) 460
AciI CCGC 3 cut(s) 348, 357, 380
AfaI GTAC 2 cut(s) 230, 341
AflII CTTAAG 1 cut(s) 187
AgsI TTSAA 2 cut(s) 65, 454
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 3 cut(s) 318, 375, 408
AluI AGCT 3 cut(s) 318, 375, 408
Alw21I GWGCWC 2 cut(s) 101, 377
Alw26I GTCTC 1 cut(s) 435
ApeKI GCWGC 2 cut(s) 315, 405
AspLEI GCGC 1 cut(s) 462
AsuHPI GGTGA 2 cut(s) 99, 369
BanII GRGCYC 1 cut(s) 377
Bbv12I GWGCWC 2 cut(s) 101, 377
BbvI GCAGC 2 cut(s) 327, 417
BccI CCATC 4 cut(s) 65, 112, 230, 448
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 435
BfrI CTTAAG 1 cut(s) 187
BisI GCNGC 2 cut(s) 316, 406
BlsI GCNGC 2 cut(s) 317, 407
Bme1390I CCNGG 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 337
BmsI GCATC 2 cut(s) 78, 283
BsaAI YACGTR 1 cut(s) 228
BseBI CCWGG 1 cut(s) 337
BseGI GGATG 2 cut(s) 274, 302
BseMII CTCAG 1 cut(s) 321
BseXI GCAGC 2 cut(s) 327, 417
BseYI CCCAGC 1 cut(s) 311
Bsh1236I CGCG 1 cut(s) 460
BsiHKAI GWGCWC 2 cut(s) 101, 377
BsiSI CCGG 1 cut(s) 392
BsmAI GTCTC 1 cut(s) 435
BsmBI CGTCTC 1 cut(s) 435
Bsp1286I GDGCHC 2 cut(s) 101, 377
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 3 cut(s) 348, 357, 380
BspCNI CTCAG 1 cut(s) 322
BspFNI CGCG 1 cut(s) 460
BspHI TCATGA 1 cut(s) 72
BspTI CTTAAG 1 cut(s) 187
BssMI GATC 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 271
BstAFI CTTAAG 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 274, 302
BstFNI CGCG 1 cut(s) 460
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 335
BstUI CGCG 1 cut(s) 460
BstV1I GCAGC 2 cut(s) 327, 417
BtsCI GGATG 2 cut(s) 274, 302
CciI TCATGA 1 cut(s) 72
CfoI GCGC 1 cut(s) 462
CseI GACGC 1 cut(s) 160
Csp6I GTAC 2 cut(s) 229, 340
CviAII CATG 2 cut(s) 73, 133
CviJI RGCY 4 cut(s) 242, 318, 375, 408
CviKI_1 RGCY 4 cut(s) 242, 318, 375, 408
CviQI GTAC 2 cut(s) 229, 340
DdeI CTNAG 1 cut(s) 330
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
EciI GGCGGA 1 cut(s) 346
Ecl136II GAGCTC 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 377
Eco32I GATATC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 375
EcoICRI GAGCTC 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 335
EcoRV GATATC 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 377
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 2 cut(s) 76, 136
FaiI YATR 4 cut(s) 52, 74, 134, 413
FatI CATG 2 cut(s) 72, 132
FblI GTMKAC 3 cut(s) 149, 172, 284
Fnu4HI GCNGC 2 cut(s) 316, 406
FokI GGATG 2 cut(s) 261, 289
FriOI GRGCYC 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 316, 406
GlaI GCGC 1 cut(s) 461
GluI GCNGC 2 cut(s) 316, 406
GsaI CCCAGC 1 cut(s) 315
HapII CCGG 1 cut(s) 392
HgaI GACGC 1 cut(s) 160
HhaI GCGC 1 cut(s) 462
Hin1II CATG 2 cut(s) 76, 136
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HincII GTYRAC 3 cut(s) 150, 173, 285
HindII GTYRAC 3 cut(s) 150, 173, 285
HinfI GANTC 5 cut(s) 161, 169, 174, 192, 332
HpaII CCGG 1 cut(s) 392
HphI GGTGA 2 cut(s) 99, 369
Hpy166II GTNNAC 3 cut(s) 150, 173, 285
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 1 cut(s) 73
Hpy8I GTNNAC 3 cut(s) 150, 173, 285
Hpy99I CGWCG 5 cut(s) 151, 154, 274, 286, 325
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 111
HpyCH4IV ACGT 1 cut(s) 227
HpyCH4V TGCA 3 cut(s) 142, 208, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 227
Hsp92II CATG 2 cut(s) 76, 136
HspAI GCGC 1 cut(s) 460
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 2 cut(s) 394, 413
LpnPI CCDG 4 cut(s) 322, 325, 349, 405
Lsp1109I GCAGC 2 cut(s) 327, 417
LweI GCATC 2 cut(s) 78, 283
MaeII ACGT 1 cut(s) 227
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 258
MhlI GDGCHC 2 cut(s) 101, 377
MluCI AATT 3 cut(s) 11, 92, 445
MlyI GAGTC 5 cut(s) 155, 168, 178, 186, 341
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 6 cut(s) 134, 194, 253, 288, 364, 370
MseI TTAA 3 cut(s) 80, 188, 236
MspCI CTTAAG 1 cut(s) 187
MspI CCGG 1 cut(s) 392
MspR9I CCNGG 1 cut(s) 337
MvaI CCWGG 1 cut(s) 337
MvnI CGCG 1 cut(s) 460
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeII GATC 1 cut(s) 116
NlaIII CATG 2 cut(s) 76, 136
NmeAIII GCCGAG 1 cut(s) 192
PagI TCATGA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PkrI GCNGC 2 cut(s) 317, 407
PleI GAGTC 5 cut(s) 155, 168, 177, 186, 340
PpsI GAGTC 5 cut(s) 155, 168, 177, 186, 340
Ppu21I YACGTR 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 311
PspGI CCWGG 1 cut(s) 335
RsaI GTAC 2 cut(s) 230, 341
RsaNI GTAC 2 cut(s) 229, 340
SacI GAGCTC 1 cut(s) 377
SalI GTCGAC 3 cut(s) 148, 171, 283
SaqAI TTAA 3 cut(s) 80, 188, 236
SatI GCNGC 2 cut(s) 316, 406
Sau3AI GATC 1 cut(s) 116
SchI GAGTC 5 cut(s) 155, 168, 178, 186, 341
ScrFI CCNGG 1 cut(s) 337
SduI GDGCHC 2 cut(s) 101, 377
SfaNI GCATC 2 cut(s) 78, 283
SgrDI CGTCGACG 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 3 cut(s) 11, 92, 445
SsiI CCGC 3 cut(s) 348, 357, 380
SstI GAGCTC 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 335
TaaI ACNGT 1 cut(s) 111
TaiI ACGT 1 cut(s) 230
TaqI TCGA 3 cut(s) 149, 172, 284
TasI AATT 3 cut(s) 11, 92, 445
Tru1I TTAA 3 cut(s) 80, 188, 236
Tru9I TTAA 3 cut(s) 80, 188, 236
TseI GCWGC 2 cut(s) 315, 405
TspDTI ATGAA 3 cut(s) 17, 21, 39
TspGWI ACGGA 3 cut(s) 270, 417, 423
Vha464I CTTAAG 1 cut(s) 187
XmiI GTMKAC 3 cut(s) 149, 172, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.