Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0020147

Physical Location & Seq

Genomic Coordinates Forward (+)

32522372 .. 32526927

Gene Structure 4556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G348100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGGCAATGGGTCTCCTCCTTGTTCCTTTGTTCAATGTTTTGCTTATTCTTATTTGGTGTACTCAGACTCTAGTGGTGGTTGCTGTGGAGGACATAGCTGGTGGTGGCAATGGCAATGGCACGAGTAGAGAAGCAGAATTAGAAGTAATTAGAGAAGCAGACAGAGTCATCAACTTGCCCGGACAGCCGCCGGTCTCATTCCCCCACTACGCTGGCTACGTCCAACTACCTAATTATCATAATTCTCACAACACCAGCAGCAGCAGCAGCAGCAGCAAGGCCTTGTTCTACTGGTTTTTTCATGCCGAACAAAATGCCTCTTCTAAACCCCTCGTCCTTTGGCTCAATGGAGGACCTGGCTGCTCGTCCGTAGCTTATGGAGCTGCACAAGAACTTGGCCCATTTCTTGTTCGGAGCAATGGAACTCTCATCCTTAACAACTTCTCCTGGAATAAAGTTGCAAATGTGCTCTTCTTGGAGGCACCTGTGGGAGTGGGATTTTCCTACACAAACAACTCAAAAGATGTGGAGACGCTGGGTGATGCAGTTACAGCCGCAGACTCGTATGCTTTCTTGGTGGAATGGTTTCAGAGATTCCCGGCCTTCAAATCTCGTGACTTTTATATTGCTGGGGAGAGCTATGCTGGTCATTATGTCCCCCAGCTGGCCGACCTCATCTACCAAAGGAACAAACACTCCTCCTCCTACATTAATCTCAAAGGTTTCATGATTGGGAATGCTGTGATCAACGGTCCAACCGACAGCCGTGGAATGTTTGACTACGCATGGAGCCATGCCATCATCTCCGACCAGCTCCACTACAATTTAGTCAAGGAATGCGATTTTGCACATGAAAATAACCAAACAGAGCACTGCAATGACCACATGCGAGCCTTCTTACAAGCTTATTCTGATATCGACATCTACGGCATTTATGCACCTGTCTGCCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATTCCAATAAAGCCAAGGACTCAACGTATAATTCCATCAGACTTCTTGTTGCACCTCGCCTCCTCACTCAACATGAGCTTTGGCACAGGCTGCCATCAGGCTATGATCCCTGCACAGAGAATTATGTTGAGCAATATTTCAACAGAGAGGATGTTCAGAGGGCCTTGCATGCCAATGTTACCAAACTGTCCTATCCTTACACCCCTTGCAGTGGCGTTATAAAGGGATGGAATGACTCCCCCGACACCCTACTGCCAGTCATTCAGAAGCTCTTAAAAGCTGGCTTGCGTATTTGGATCTATAGTGGGGACACAGATGGAAGGGTGCCGGTAACATCAACAAGGTACAGCATAAAAAAGATGGGGTTAAGAGTAAAGCAAGAATGGAGGGCATGGTTTGATAGGGGCCAAGTGGCCGGCTGGGCGGAGACGTATGAGGAGGGCGGCGGCCTCACATTTGCCACAGTGAGAGGAGCAGGCCACCAGGTCCCGGCCTTTGCACCTCGTCAGTCTCTTTCACTCTTCACCCATTTCCTCTCTCCCAACGCTACCCTCCCATCTTCTCGCTTTCACTCTAAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

522

Amino Acids

57.88

Weight (kDa)

6.62

Isoelectric Point (pI)

45.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020147)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G08260
malus_domestica	MD13G1004500.v1.1 MD16G1003100.v1.1
prunus_persica	Prupe.1G348100_v2.0.a1
pyrus_communis	pycom13g00390 pycom16g00300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1202
AccB1I	GGYRCC	2 cut(s)	481, 1306
AciI	CCGC	5 cut(s)	188, 555, 1406, 1425, 1428
AclWI	GGATC	2 cut(s)	1082, 1286
AcoI	YGGCCR	2 cut(s)	666, 1395
AfaI	GTAC	2 cut(s)	61, 1328
AfiI	CCNNNNNNNGG	3 cut(s)	664, 1193, 1471
AgsI	TTSAA	3 cut(s)	34, 607, 1123
AjnI	CCWGG	3 cut(s)	355, 446, 1464
AloI	GAACNNNNNNTCC	2 cut(s)	680, 712
Alw21I	GWGCWC	2 cut(s)	471, 873
Alw26I	GTCTC	5 cut(s)	17, 199, 524, 1403, 1497
AlwI	GGATC	2 cut(s)	1082, 1286
ApeKI	GCWGC	9 cut(s)	258, 261, 264, 267, 270, 273, 360, 383, 1072
AseI	ATTAAT	1 cut(s)	711
Asp700I	GAANNNNTTC	1 cut(s)	585
AspS9I	GGNCC	6 cut(s)	353, 398, 752, 1143, 1387, 1468
AsuC2I	CCSGG	3 cut(s)	180, 599, 1472
AsuHPI	GGTGA	2 cut(s)	551, 1498
AvaII	GGWCC	3 cut(s)	353, 752, 1468
BanI	GGYRCC	2 cut(s)	481, 1306
BauI	CACGAG	2 cut(s)	121, 612
Bbv12I	GWGCWC	2 cut(s)	471, 873
BbvI	GCAGC	9 cut(s)	270, 273, 276, 279, 282, 285, 347, 370, 1059
BccI	CCATC	7 cut(s)	806, 1025, 1084, 1203, 1292, 1336, 1546
BceAI	ACGGC	2 cut(s)	750, 943
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciT130I	CCWGG	3 cut(s)	357, 448, 1466
BclI	TGATCA	1 cut(s)	744
BcnI	CCSGG	3 cut(s)	180, 599, 1472
BcoDI	GTCTC	5 cut(s)	17, 199, 524, 1403, 1497
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	1 cut(s)	1282
BglI	GCCNNNNNGGC	1 cut(s)	1403
Bme1390I	CCNGG	6 cut(s)	180, 357, 448, 599, 1466, 1472
Bme18I	GGWCC	3 cut(s)	353, 752, 1468
BmgT120I	GGNCC	6 cut(s)	353, 398, 752, 1143, 1387, 1468
BmiI	GGNNCC	5 cut(s)	483, 791, 1308, 1388, 1470
BmrFI	CCNGG	6 cut(s)	180, 357, 448, 599, 1466, 1472
BmsI	GCATC	1 cut(s)	532
BpuMI	CCSGG	3 cut(s)	180, 599, 1472
BsaI	GGTCTC	2 cut(s)	17, 199
BsaJI	CCNNGG	2 cut(s)	766, 996
BsaXI	ACNNNNNCTCC	8 cut(s)	428, 458, 680, 686, 710, 716, 1026, 1056
Bsc4I	CCNNNNNNNGG	3 cut(s)	664, 1193, 1471
Bse118I	RCCGGY	3 cut(s)	190, 1309, 1397
Bse1I	ACTGG	2 cut(s)	296, 1238
Bse3DI	GCAATG	5 cut(s)	12, 115, 121, 424, 883
BseBI	CCWGG	3 cut(s)	357, 448, 1466
BseDI	CCNNGG	2 cut(s)	766, 996
BseGI	GGATG	3 cut(s)	429, 1138, 1214
BseLI	CCNNNNNNNGG	3 cut(s)	664, 1193, 1471
BseMI	GCAATG	5 cut(s)	12, 115, 121, 424, 883
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	2 cut(s)	296, 1238
BseRI	GAGGAG	6 cut(s)	5, 688, 691, 1034, 1433, 1467
BseXI	GCAGC	9 cut(s)	270, 273, 276, 279, 282, 285, 347, 370, 1059
BseYI	CCCAGC	4 cut(s)	535, 629, 660, 1401
BsgI	GTGCAG	2 cut(s)	369, 1078
BshNI	GGYRCC	2 cut(s)	481, 1306
BsiHKAI	GWGCWC	2 cut(s)	471, 873
BsiSI	CCGG	6 cut(s)	180, 191, 599, 1310, 1398, 1472
BslFI	GGGAC	3 cut(s)	641, 1304, 1454
BslI	CCNNNNNNNGG	3 cut(s)	664, 1193, 1471
BsmAI	GTCTC	5 cut(s)	17, 199, 524, 1403, 1497
BsmBI	CGTCTC	2 cut(s)	524, 1403
BsmFI	GGGAC	3 cut(s)	641, 1304, 1454
BsmI	GAATGC	2 cut(s)	742, 842
Bso31I	GGTCTC	2 cut(s)	17, 199
Bsp1286I	GDGCHC	2 cut(s)	471, 873
Bsp143I	GATC	3 cut(s)	744, 1087, 1278
BspACI	CCGC	5 cut(s)	188, 555, 1406, 1425, 1428
BspCNI	CTCAG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	726
BspLI	GGNNCC	5 cut(s)	483, 791, 1308, 1388, 1470
BspPI	GGATC	2 cut(s)	1082, 1286
BspQI	GCTCTTC	1 cut(s)	476
BspT107I	GGYRCC	2 cut(s)	481, 1306
BspTNI	GGTCTC	2 cut(s)	17, 199
BsrDI	GCAATG	5 cut(s)	12, 115, 121, 424, 883
BsrFI	RCCGGY	3 cut(s)	190, 1309, 1397
BsrI	ACTGG	2 cut(s)	296, 1238
BssAI	RCCGGY	3 cut(s)	190, 1309, 1397
BssECI	CCNNGG	2 cut(s)	766, 996
BssMI	GATC	3 cut(s)	744, 1087, 1278
BssSI	CACGAG	2 cut(s)	121, 612
BssT1I	CCWWGG	1 cut(s)	996
Bst2BI	CACGAG	2 cut(s)	121, 612
Bst2UI	CCWGG	3 cut(s)	357, 448, 1466
Bst4CI	ACNGT	3 cut(s)	752, 1170, 1447
Bst6I	CTCTTC	4 cut(s)	325, 476, 958, 1508
BstAPI	GCANNNNNTGC	1 cut(s)	1072
BstC8I	GCNNGC	8 cut(s)	214, 666, 891, 1152, 1264, 1268, 1399, 1459
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	766
BstF5I	GGATG	3 cut(s)	429, 1138, 1214
BstKTI	GATC	3 cut(s)	747, 1090, 1281
BstMAI	GTCTC	5 cut(s)	17, 199, 524, 1403, 1497
BstMBI	GATC	3 cut(s)	744, 1087, 1278
BstNI	CCWGG	3 cut(s)	357, 448, 1466
BstNSI	RCATGY	2 cut(s)	889, 1154
BstSCI	CCNGG	6 cut(s)	178, 355, 446, 597, 1464, 1470
BstSFI	CTRYAG	1 cut(s)	1282
BstV1I	GCAGC	9 cut(s)	270, 273, 276, 279, 282, 285, 347, 370, 1059
BstX2I	RGATCY	1 cut(s)	1278
BstXI	CCANNNNNNTGG	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	1278
BtgI	CCRYGG	1 cut(s)	766
BtsCI	GGATG	3 cut(s)	429, 1138, 1214
BtsI	GCAGTG	2 cut(s)	871, 1198
BtsIMutI	CAGTG	3 cut(s)	871, 1198, 1452
Cac8I	GCNNGC	8 cut(s)	214, 666, 891, 1152, 1264, 1268, 1399, 1459
CciI	TCATGA	1 cut(s)	726
Cfr10I	RCCGGY	3 cut(s)	190, 1309, 1397
Cfr13I	GGNCC	6 cut(s)	353, 398, 752, 1143, 1387, 1468
CseI	GACGC	1 cut(s)	541
CsiI	ACCWGGT	1 cut(s)	1464
Csp6I	GTAC	2 cut(s)	60, 1327
CspCI	CAANNNNNGTGG	2 cut(s)	507, 542
CviAII	CATG	9 cut(s)	302, 727, 786, 794, 851, 886, 1055, 1151, 1374
CviQI	GTAC	2 cut(s)	60, 1327
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	3 cut(s)	746, 1089, 1280
DpnII	GATC	3 cut(s)	744, 1087, 1278
EaeI	YGGCCR	2 cut(s)	666, 1395
Eam1104I	CTCTTC	4 cut(s)	325, 476, 958, 1508
EarI	CTCTTC	4 cut(s)	325, 476, 958, 1508
EciI	GGCGGA	1 cut(s)	1421
Eco130I	CCWWGG	1 cut(s)	996
Eco147I	AGGCCT	1 cut(s)	281
Eco31I	GGTCTC	2 cut(s)	17, 199
Eco32I	GATATC	1 cut(s)	916
Eco47I	GGWCC	3 cut(s)	353, 752, 1468
EcoO109I	RGGNCCY	3 cut(s)	353, 1143, 1468
EcoRII	CCWGG	3 cut(s)	355, 446, 1464
EcoRV	GATATC	1 cut(s)	916
EcoT14I	CCWWGG	1 cut(s)	996
ErhI	CCWWGG	1 cut(s)	996
Esp3I	CGTCTC	2 cut(s)	524, 1403
FaeI	CATG	9 cut(s)	305, 730, 789, 797, 854, 889, 1058, 1154, 1377
FaqI	GGGAC	3 cut(s)	641, 1304, 1454
FatI	CATG	9 cut(s)	301, 726, 785, 793, 850, 885, 1054, 1150, 1373
FbaI	TGATCA	1 cut(s)	744
FokI	GGATG	3 cut(s)	416, 1145, 1221
FspBI	CTAG	1 cut(s)	71
GsaI	CCCAGC	4 cut(s)	539, 633, 664, 1405
HapII	CCGG	6 cut(s)	180, 191, 599, 1310, 1398, 1472
HgaI	GACGC	1 cut(s)	541
Hin1II	CATG	9 cut(s)	305, 730, 789, 797, 854, 889, 1058, 1154, 1377
HindIII	AAGCTT	1 cut(s)	903
HinfI	GANTC	6 cut(s)	67, 165, 560, 594, 1001, 1217
HpaII	CCGG	6 cut(s)	180, 191, 599, 1310, 1398, 1472
HphI	GGTGA	2 cut(s)	551, 1498
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	8 cut(s)	66, 414, 591, 808, 913, 1022, 1140, 1248
Hpy188III	TCNNGA	2 cut(s)	614, 727
Hpy8I	GTNNAC	1 cut(s)	60
HpyAV	CCTTC	3 cut(s)	613, 904, 1296
HpyCH4III	ACNGT	3 cut(s)	752, 1170, 1447
HpyCH4IV	ACGT	3 cut(s)	219, 1007, 1412
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	3 cut(s)	219, 1007, 1412
Hsp92II	CATG	9 cut(s)	305, 730, 789, 797, 854, 889, 1058, 1154, 1377
KroI	GCCGGC	1 cut(s)	1397
KroNI	GCCGGC	1 cut(s)	1399
Ksp22I	TGATCA	1 cut(s)	744
Kzo9I	GATC	3 cut(s)	744, 1087, 1278
LguI	GCTCTTC	1 cut(s)	476
LmnI	GCTCC	5 cut(s)	380, 414, 789, 819, 1454
Lsp1109I	GCAGC	9 cut(s)	270, 273, 276, 279, 282, 285, 347, 370, 1059
LweI	GCATC	1 cut(s)	532
MabI	ACCWGGT	1 cut(s)	1464
MaeI	CTAG	1 cut(s)	71
MaeII	ACGT	3 cut(s)	219, 1007, 1412
MaeIII	GTNAC	4 cut(s)	547, 614, 1159, 1312
MalI	GATC	3 cut(s)	746, 1089, 1280
MboI	GATC	3 cut(s)	744, 1087, 1278
MflI	RGATCY	1 cut(s)	1278
MhlI	GDGCHC	2 cut(s)	471, 873
MluCI	AATT	8 cut(s)	137, 147, 232, 241, 823, 982, 1012, 1102
MlyI	GAGTC	5 cut(s)	61, 174, 554, 995, 1211
MmeI	TCCRAC	3 cut(s)	247, 779, 831
MroNI	GCCGGC	1 cut(s)	1397
MroXI	GAANNNNTTC	1 cut(s)	585
MseI	TTAA	4 cut(s)	435, 711, 1256, 1349
MslI	CAYNNNNRTG	2 cut(s)	876, 1155
MspA1I	CMGCKG	1 cut(s)	664
MspI	CCGG	6 cut(s)	180, 191, 599, 1310, 1398, 1472
MspR9I	CCNGG	6 cut(s)	180, 357, 448, 599, 1466, 1472
Mva1269I	GAATGC	2 cut(s)	742, 842
MvaI	CCWGG	3 cut(s)	357, 448, 1466
NaeI	GCCGGC	1 cut(s)	1399
NciI	CCSGG	3 cut(s)	180, 599, 1472
NdeII	GATC	3 cut(s)	744, 1087, 1278
NgoMIV	GCCGGC	1 cut(s)	1397
NlaIII	CATG	9 cut(s)	305, 730, 789, 797, 854, 889, 1058, 1154, 1377
NlaIV	GGNNCC	5 cut(s)	483, 791, 1308, 1388, 1470
NmuCI	GTSAC	1 cut(s)	614
NspI	RCATGY	2 cut(s)	889, 1154
PaeI	GCATGC	1 cut(s)	1154
PagI	TCATGA	1 cut(s)	726
PceI	AGGCCT	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 756
PctI	GAATGC	2 cut(s)	742, 842
PdiI	GCCGGC	1 cut(s)	1399
PdmI	GAANNNNTTC	1 cut(s)	585
PfeI	GAWTC	1 cut(s)	594
PflFI	GACNNNGTC	1 cut(s)	164
PfoI	TCCNGGA	1 cut(s)	446
PleI	GAGTC	5 cut(s)	61, 173, 554, 995, 1211
PpsI	GAGTC	5 cut(s)	61, 173, 554, 995, 1211
PpuMI	RGGWCCY	2 cut(s)	353, 1468
PshBI	ATTAAT	1 cut(s)	711
PsiI	TTATAA	1 cut(s)	1202
Psp5II	RGGWCCY	2 cut(s)	353, 1468
Psp6I	CCWGG	3 cut(s)	355, 446, 1464
PspFI	CCCAGC	4 cut(s)	535, 629, 660, 1401
PspGI	CCWGG	3 cut(s)	355, 446, 1464
PspN4I	GGNNCC	5 cut(s)	483, 791, 1308, 1388, 1470
PspPI	GGNCC	6 cut(s)	353, 398, 752, 1143, 1387, 1468
PspPPI	RGGWCCY	2 cut(s)	353, 1468
PsuI	RGATCY	1 cut(s)	1278
PsyI	GACNNNGTC	1 cut(s)	164
PvuII	CAGCTG	1 cut(s)	664
RsaI	GTAC	2 cut(s)	61, 1328
RsaNI	GTAC	2 cut(s)	60, 1327
RseI	CAYNNNNRTG	2 cut(s)	876, 1155
SapI	GCTCTTC	1 cut(s)	476
SaqAI	TTAA	4 cut(s)	435, 711, 1256, 1349
Sau3AI	GATC	3 cut(s)	744, 1087, 1278
Sau96I	GGNCC	6 cut(s)	353, 398, 752, 1143, 1387, 1468
SchI	GAGTC	5 cut(s)	61, 174, 554, 995, 1211
ScrFI	CCNGG	6 cut(s)	180, 357, 448, 599, 1466, 1472
SduI	GDGCHC	2 cut(s)	471, 873
SexAI	ACCWGGT	1 cut(s)	1464
SfaNI	GCATC	1 cut(s)	532
SfcI	CTRYAG	1 cut(s)	1282
SinI	GGWCC	3 cut(s)	353, 752, 1468
SmiMI	CAYNNNNRTG	2 cut(s)	876, 1155
SphI	GCATGC	1 cut(s)	1154
Sse9I	AATT	8 cut(s)	137, 147, 232, 241, 823, 982, 1012, 1102
SseBI	AGGCCT	1 cut(s)	281
SsiI	CCGC	5 cut(s)	188, 555, 1406, 1425, 1428
SspI	AATATT	1 cut(s)	1118
SspMI	CTAG	1 cut(s)	71
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	6 cut(s)	178, 355, 446, 597, 1464, 1470
StyI	CCWWGG	1 cut(s)	996
TaaI	ACNGT	3 cut(s)	752, 1170, 1447
TaiI	ACGT	3 cut(s)	222, 1010, 1415
TaqI	TCGA	1 cut(s)	918
TasI	AATT	8 cut(s)	137, 147, 232, 241, 823, 982, 1012, 1102
TatI	WGTACW	1 cut(s)	59
TauI	GCSGC	4 cut(s)	190, 557, 1428, 1431
TfiI	GAWTC	1 cut(s)	594
Tru1I	TTAA	4 cut(s)	435, 711, 1256, 1349
Tru9I	TTAA	4 cut(s)	435, 711, 1256, 1349
TscAI	CASTG	3 cut(s)	878, 1198, 1452
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	9 cut(s)	258, 261, 264, 267, 270, 273, 360, 383, 1072
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	3 cut(s)	290, 715, 867
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	3 cut(s)	878, 1198, 1452
Tth111I	GACNNNGTC	1 cut(s)	164
VpaK11BI	GGWCC	3 cut(s)	353, 752, 1468
VspI	ATTAAT	1 cut(s)	711
XceI	RCATGY	2 cut(s)	889, 1154
XmnI	GAANNNNTTC	1 cut(s)	585
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.