Prupe.1G350800_v2.0.a1

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014487
Physical Location & Seq
Reverse (-)
32651672 .. 32653392
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G350800.1

Sequence Viewer

Length: 1500 bp
ATGAAGGGCACTCTCTCCCCTTCTCTGGGCAATTTGAATTTCTTGGAGGTAATGGTAATCAGTGGGTTCAAGCAAATCACGGGTCCAATTCCAGAGAGCTTCTCTAATCTCGCCCACCTCACCCAATTGGCCCTTGAAGACAATTCCCTCGTAGGGAACATTCCTCCAGGTTTAGGTCAGTTGTCCTCCCTCCAAAGCCTCTCCCTCAGCGGCAACCGTTTCAGGGGTCAGATTCCCCCAACCCTAGGCCATCTCACCAATCTCGTCCAAATCAATTTAAAAAGAAATTTCCTCACCGGTTCAATCCCTCCCACTTTTCAAAATTTTCATGCTTTGCAGTATCTTGATCTCAGCTTCAATATGTTGTCCGGCCTCATTCCAGATTTCATTGGTGGCCGCTACTTACCAAACCTCACTTTGATTGACCTCTCCAATAACCAGTTTTCTGGTCAGATGCCCATTTCCCTCTTCAGCTTGCCCAAGCTTTTGGACCTCTCCCTGAACCAAAACCAGCTGACCGGCATAATCCCAGTCCAGGTGGAGGGCCTCAAATCCCTTACCAGTCTTTCATTGAGCTCCAATCGCCTTACCGGCCACATTCCCATTTCCATTTCAAGGTTGCACAACCTCTGGTACCTAAATTTATCTGCCAATGGGCTTTCAGACCCTCTTCCCTCTACCCTTGCCACGGGCATTCCTTCTCTCTTGTCAATAGACTTGTCTTACAACAAGCTCAGTTTGGGGAAAGTTCCAGATTGGATCAGGAGCAGACAGCTTCGAGATGTTCATCTTGCCGGCTGCCAGTTAAGCGGAACCCTCCCAAGCTTTGCAAAGCCTGATTCTTTCAACTCCATTGACCTCTCTCATAATCATTTTACTGGTGGAATTTCAAACTTGTTGGCCAACATGTCAAGCCTGCAGAACCTCAACCTCTCCAACAACCAACTCAAGGCTGATCTTTCCGAAATCAAGTTGCCCGACACCCTCTCTTCCCTGGATGTACACGCAAATCAGCTCACCGGATCTCTCTCAGGGTCGACAGGAATCTTAAATGACAGGGTAAGCAGATTTTTGGAGGTTGTAGATGTATCCAACAACCAAATTTCTGGTGGCATCCCAGAGTTTAGGGAAGGCTTGAGGCTGAAAATGCTCGACGTAGGAAGCAACAAGATCGCTGGTCCCATCCCCAACTCAGTTTCAAACCTGGCTCAACTGGAGAGGTTTGATATATCAAGAAACCAGATAACAGGCACCATCCCCACAAGTTTGGGGTTGCTGTTGAAGCTTCAATGGCTTGACGTGTCCATCAATGGGCTCACTGGAAAGATTCCAAACAGCCTACTGGGGATTGAACGTCTCAAGCACGCAAGCTTCAGGGCAAACAGGTTGTGTGGGGAGATCCCACAAGGGAGACCATTTAACATTTTTCCTGCAGCTGCATATCTGCACAATTTGTGCCTTTGTGGCAAGCCTATGCCACCTTGCAGGCAGAGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

500

Amino Acids

54.07

Weight (kDa)

9.08

Isoelectric Point (pI)

30.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23400
fragaria_vesca FvH4_4g37290
malus_domestica MD13G1001800.v1.1
prunus_persica Prupe.1G350800_v2.0.a1
pyrus_communis pycom13g00140 pycom16g00040
rosa_chinensis RchiOBHm_Chr4g0447111
rosa_laevigata RLG00000005604
rosa_multiflora Rmu_sc0010825.1_g000008 Rmu_ssc0000178.1_g000011
rosa_roxburghii Rroxscaffold_5G00387450
rosa_rugosa Rorug04G0378300
rosa_samantha Rh4AG439400 Rh4BG448500 Rh4CG465500 Rh4DG446900
rosa_wichuraiana Rw4G037590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 633
AccB1I GGYRCC 2 cut(s) 633, 1250
AccI GTMKAC 1 cut(s) 1037
AciI CCGC 3 cut(s) 210, 397, 810
AclWI GGATC 3 cut(s) 767, 1030, 1393
AcoI YGGCCR 3 cut(s) 394, 592, 900
AcsI RAATTY 6 cut(s) 37, 286, 322, 640, 885, 1101
AcuI CTGAAG 2 cut(s) 454, 1357
AfaI GTAC 2 cut(s) 635, 1002
AflIII ACRYGT 2 cut(s) 906, 1299
AgeI ACCGGT 1 cut(s) 296
AjiI CACGTC 1 cut(s) 1300
AjnI CCWGG 4 cut(s) 166, 534, 993, 1203
Alw21I GWGCWC 1 cut(s) 578
Alw26I GTCTC 2 cut(s) 1361, 1405
AlwI GGATC 3 cut(s) 767, 1030, 1393
AoxI GGCC 7 cut(s) 129, 247, 370, 394, 544, 592, 900
ApeKI GCWGC 3 cut(s) 798, 1433, 1436
ApoI RAATTY 6 cut(s) 37, 286, 322, 640, 885, 1101
ArsI GACNNNNNNTTYG 2 cut(s) 67, 99
AsiGI ACCGGT 1 cut(s) 296
Asp718I GGTACC 1 cut(s) 633
AspA2I CCTAGG 1 cut(s) 244
AspS9I GGNCC 5 cut(s) 83, 130, 490, 544, 1178
AsuHPI GGTGA 4 cut(s) 112, 247, 286, 1009
AvaII GGWCC 3 cut(s) 83, 490, 1178
AvrII CCTAGG 1 cut(s) 244
BaeGI GKGCMC 1 cut(s) 11
BalI TGGCCA 1 cut(s) 902
BanI GGYRCC 2 cut(s) 633, 1250
BanII GRGCYC 2 cut(s) 578, 1317
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 578
BbvCI CCTCAGC 1 cut(s) 206
BbvI GCAGC 3 cut(s) 785, 1423, 1445
BccI CCATC 4 cut(s) 258, 1190, 1262, 1313
BcgI CGANNNNNNTGC 2 cut(s) 1153, 1187
BciT130I CCWGG 4 cut(s) 168, 536, 995, 1205
BciVI GTATCC 1 cut(s) 1099
BcoDI GTCTC 2 cut(s) 1361, 1405
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 2 cut(s) 917, 1431
BfuI GTATCC 1 cut(s) 1099
BglI GCCNNNNNGGC 2 cut(s) 591, 1464
BisI GCNGC 5 cut(s) 211, 397, 799, 1434, 1437
BlnI CCTAGG 1 cut(s) 244
BlsI GCNGC 5 cut(s) 212, 398, 800, 1435, 1438
Bme1390I CCNGG 4 cut(s) 168, 536, 995, 1205
Bme18I GGWCC 3 cut(s) 83, 490, 1178
BmgBI CACGTC 1 cut(s) 1300
BmgT120I GGNCC 5 cut(s) 83, 130, 490, 544, 1178
BmiI GGNNCC 5 cut(s) 84, 635, 814, 1180, 1252
BmrFI CCNGG 4 cut(s) 168, 536, 995, 1205
BmrI ACTGGG 2 cut(s) 524, 1352
BmsI GCATC 2 cut(s) 444, 1122
BmuI ACTGGG 2 cut(s) 524, 1352
BpiI GAAGAC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpmI CTGGAG 2 cut(s) 150, 1235
Bpu10I CCTNAGC 1 cut(s) 206
BpuEI CTTGAG 3 cut(s) 932, 1156, 1343
BsaBI GATNNNNATC 1 cut(s) 786
BsaI GGTCTC 1 cut(s) 1405
BsaJI CCNNGG 3 cut(s) 244, 687, 993
BsaWI WCCGGW 2 cut(s) 296, 1019
Bse118I RCCGGY 4 cut(s) 296, 518, 590, 794
Bse1I ACTGG 9 cut(s) 439, 530, 561, 802, 883, 1218, 1324, 1347, 1495
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 4 cut(s) 168, 536, 995, 1205
BseDI CCNNGG 3 cut(s) 244, 687, 993
BseGI GGATG 4 cut(s) 1003, 1113, 1182, 1254
BseJI GATNNNNATC 1 cut(s) 786
BseMII CTCAG 5 cut(s) 220, 364, 748, 1044, 1206
BseNI ACTGG 9 cut(s) 439, 530, 561, 802, 883, 1218, 1324, 1347, 1495
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 3 cut(s) 785, 1423, 1445
BsgI GTGCAG 1 cut(s) 1430
BshFI GGCC 7 cut(s) 131, 249, 372, 396, 546, 594, 902
BshNI GGYRCC 2 cut(s) 633, 1250
BshTI ACCGGT 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 578
BsiSI CCGG 6 cut(s) 297, 369, 519, 591, 795, 1020
BslFI GGGAC 1 cut(s) 1164
BsmAI GTCTC 2 cut(s) 1361, 1405
BsmBI CGTCTC 1 cut(s) 1361
BsmFI GGGAC 1 cut(s) 1164
BsmI GAATGC 1 cut(s) 693
BsnI GGCC 7 cut(s) 131, 249, 372, 396, 546, 594, 902
Bso31I GGTCTC 1 cut(s) 1405
Bsp1286I GDGCHC 3 cut(s) 11, 578, 1317
Bsp1407I TGTACA 1 cut(s) 1000
Bsp143I GATC 6 cut(s) 346, 759, 955, 1022, 1170, 1398
BspACI CCGC 3 cut(s) 210, 397, 810
BspANI GGCC 7 cut(s) 131, 249, 372, 396, 546, 594, 902
BspCNI CTCAG 5 cut(s) 219, 363, 747, 1043, 1205
BspLI GGNNCC 5 cut(s) 84, 635, 814, 1180, 1252
BspMAI CTGCAG 2 cut(s) 921, 1435
BspPI GGATC 3 cut(s) 767, 1030, 1393
BspT107I GGYRCC 2 cut(s) 633, 1250
BspTNI GGTCTC 1 cut(s) 1405
BsrFI RCCGGY 4 cut(s) 296, 518, 590, 794
BsrGI TGTACA 1 cut(s) 1000
BsrI ACTGG 9 cut(s) 439, 530, 561, 802, 883, 1218, 1324, 1347, 1495
BssAI RCCGGY 4 cut(s) 296, 518, 590, 794
BssECI CCNNGG 3 cut(s) 244, 687, 993
BssMI GATC 6 cut(s) 346, 759, 955, 1022, 1170, 1398
BssT1I CCWWGG 1 cut(s) 244
Bst2UI CCWGG 4 cut(s) 168, 536, 995, 1205
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 3 cut(s) 473, 675, 994
BstAUI TGTACA 1 cut(s) 1000
BstC8I GCNNGC 7 cut(s) 476, 796, 917, 1365, 1369, 1469, 1487
BstDEI CTNAG 5 cut(s) 206, 350, 734, 1030, 1192
BstDSI CCRYGG 1 cut(s) 687
BstF5I GGATG 4 cut(s) 1003, 1113, 1182, 1254
BstKTI GATC 6 cut(s) 349, 762, 958, 1025, 1173, 1401
BstMAI GTCTC 2 cut(s) 1361, 1405
BstMBI GATC 6 cut(s) 346, 759, 955, 1022, 1170, 1398
BstMWI GCNNNNNNNGC 8 cut(s) 582, 591, 807, 1147, 1282, 1291, 1464, 1491
BstNI CCWGG 4 cut(s) 168, 536, 995, 1205
BstNSI RCATGY 1 cut(s) 910
BstSCI CCNGG 4 cut(s) 166, 534, 993, 1203
BstSFI CTRYAG 2 cut(s) 917, 1431
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 785, 1423, 1445
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 1022, 1398
BstXI CCANNNNNNTGG 4 cut(s) 446, 487, 1106, 1267
BstYI RGATCY 2 cut(s) 1022, 1398
BsuI GTATCC 1 cut(s) 1099
BsuRI GGCC 7 cut(s) 131, 249, 372, 396, 546, 594, 902
BtgI CCRYGG 1 cut(s) 687
BtrI CACGTC 1 cut(s) 1300
BtsCI GGATG 4 cut(s) 1003, 1113, 1182, 1254
BtsIMutI CAGTG 2 cut(s) 67, 1317
Cac8I GCNNGC 7 cut(s) 476, 796, 917, 1365, 1369, 1469, 1487
Cfr10I RCCGGY 4 cut(s) 296, 518, 590, 794
Cfr13I GGNCC 5 cut(s) 83, 130, 490, 544, 1178
Csp6I GTAC 2 cut(s) 634, 1001
CspAI ACCGGT 1 cut(s) 296
CviAII CATG 2 cut(s) 329, 907
CviQI GTAC 2 cut(s) 634, 1001
DdeI CTNAG 5 cut(s) 206, 350, 734, 1030, 1192
DpnI GATC 6 cut(s) 348, 761, 957, 1024, 1172, 1400
DpnII GATC 6 cut(s) 346, 759, 955, 1022, 1170, 1398
DraI TTTAAA 1 cut(s) 279
EaeI YGGCCR 3 cut(s) 394, 592, 900
Eam1104I CTCTTC 3 cut(s) 473, 675, 994
EarI CTCTTC 3 cut(s) 473, 675, 994
Ecl136II GAGCTC 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 244
Eco24I GRGCYC 2 cut(s) 578, 1317
Eco31I GGTCTC 1 cut(s) 1405
Eco47I GGWCC 3 cut(s) 83, 490, 1178
Eco53kI GAGCTC 1 cut(s) 576
Eco57I CTGAAG 2 cut(s) 454, 1357
EcoICRI GAGCTC 1 cut(s) 576
EcoO109I RGGNCCY 1 cut(s) 544
EcoRII CCWGG 4 cut(s) 166, 534, 993, 1203
EcoT14I CCWWGG 1 cut(s) 244
EcoT38I GRGCYC 2 cut(s) 578, 1317
ErhI CCWWGG 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 1361
FaeI CATG 2 cut(s) 332, 910
FaiI YATR 8 cut(s) 330, 362, 524, 867, 908, 1229, 1441, 1475
FaqI GGGAC 1 cut(s) 1164
FatI CATG 2 cut(s) 328, 906
FblI GTMKAC 1 cut(s) 1037
Fnu4HI GCNGC 5 cut(s) 211, 397, 799, 1434, 1437
FokI GGATG 4 cut(s) 1010, 1100, 1169, 1241
FriOI GRGCYC 2 cut(s) 578, 1317
Fsp4HI GCNGC 5 cut(s) 211, 397, 799, 1434, 1437
FspBI CTAG 1 cut(s) 245
GluI GCNGC 5 cut(s) 211, 397, 799, 1434, 1437
GsuI CTGGAG 2 cut(s) 150, 1235
HaeIII GGCC 7 cut(s) 131, 249, 372, 396, 546, 594, 902
HapII CCGG 6 cut(s) 297, 369, 519, 591, 795, 1020
Hin1II CATG 2 cut(s) 332, 910
HincII GTYRAC 1 cut(s) 1038
HindII GTYRAC 1 cut(s) 1038
HindIII AAGCTT 4 cut(s) 482, 823, 1283, 1369
HinfI GANTC 4 cut(s) 232, 839, 1044, 1327
HpaII CCGG 6 cut(s) 297, 369, 519, 591, 795, 1020
HphI GGTGA 4 cut(s) 112, 247, 286, 1009
Hpy166II GTNNAC 2 cut(s) 1003, 1038
Hpy188I TCNGA 4 cut(s) 231, 453, 664, 964
Hpy188III TCNNGA 7 cut(s) 92, 344, 380, 752, 763, 779, 1233
Hpy8I GTNNAC 2 cut(s) 1003, 1038
Hpy99I CGWCG 1 cut(s) 1157
HpyAV CCTTC 3 cut(s) 30, 708, 1124
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 3 cut(s) 1155, 1299, 1354
HpyCH4V TGCA 8 cut(s) 337, 622, 830, 919, 1433, 1439, 1447, 1485
HpyF10VI GCNNNNNNNGC 8 cut(s) 582, 591, 807, 1147, 1282, 1291, 1464, 1491
HpyF3I CTNAG 5 cut(s) 206, 350, 734, 1030, 1192
HpySE526I ACGT 3 cut(s) 1155, 1299, 1354
Hsp92II CATG 2 cut(s) 332, 910
KpnI GGTACC 1 cut(s) 637
KroI GCCGGC 1 cut(s) 794
KroNI GCCGGC 1 cut(s) 796
Kzo9I GATC 6 cut(s) 346, 759, 955, 1022, 1170, 1398
LmnI GCTCC 2 cut(s) 581, 765
Lsp1109I GCAGC 3 cut(s) 785, 1423, 1445
LweI GCATC 2 cut(s) 444, 1122
MaeI CTAG 1 cut(s) 245
MaeII ACGT 3 cut(s) 1155, 1299, 1354
MalI GATC 6 cut(s) 348, 761, 957, 1024, 1172, 1400
MboI GATC 6 cut(s) 346, 759, 955, 1022, 1170, 1398
MboII GAAGA 4 cut(s) 149, 460, 662, 981
MfeI CAATTG 1 cut(s) 125
MflI RGATCY 2 cut(s) 1022, 1398
MhlI GDGCHC 3 cut(s) 11, 578, 1317
MlsI TGGCCA 1 cut(s) 902
MluNI TGGCCA 1 cut(s) 902
MmeI TCCRAC 2 cut(s) 960, 1116
Mox20I TGGCCA 1 cut(s) 902
MroNI GCCGGC 1 cut(s) 794
MscI TGGCCA 1 cut(s) 902
MseI TTAA 4 cut(s) 278, 806, 1049, 1419
Msp20I TGGCCA 1 cut(s) 902
MspA1I CMGCKG 3 cut(s) 210, 514, 1436
MspI CCGG 6 cut(s) 297, 369, 519, 591, 795, 1020
MspR9I CCNGG 4 cut(s) 168, 536, 995, 1205
MunI CAATTG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 693
MvaI CCWGG 4 cut(s) 168, 536, 995, 1205
MwoI GCNNNNNNNGC 8 cut(s) 582, 591, 807, 1147, 1282, 1291, 1464, 1491
NaeI GCCGGC 1 cut(s) 796
NdeII GATC 6 cut(s) 346, 759, 955, 1022, 1170, 1398
NgoMIV GCCGGC 1 cut(s) 794
NlaIII CATG 2 cut(s) 332, 910
NlaIV GGNNCC 5 cut(s) 84, 635, 814, 1180, 1252
NspI RCATGY 1 cut(s) 910
PciI ACATGT 1 cut(s) 906
PctI GAATGC 1 cut(s) 693
PdiI GCCGGC 1 cut(s) 796
PfeI GAWTC 4 cut(s) 232, 839, 1044, 1327
PinAI ACCGGT 1 cut(s) 296
PkrI GCNGC 5 cut(s) 212, 398, 800, 1435, 1438
PscI ACATGT 1 cut(s) 906
Psp124BI GAGCTC 1 cut(s) 578
Psp6I CCWGG 4 cut(s) 166, 534, 993, 1203
PspGI CCWGG 4 cut(s) 166, 534, 993, 1203
PspN4I GGNNCC 5 cut(s) 84, 635, 814, 1180, 1252
PspPI GGNCC 5 cut(s) 83, 130, 490, 544, 1178
PstI CTGCAG 2 cut(s) 921, 1435
PsuI RGATCY 2 cut(s) 1022, 1398
PvuII CAGCTG 2 cut(s) 514, 1436
RsaI GTAC 2 cut(s) 635, 1002
RsaNI GTAC 2 cut(s) 634, 1001
SacI GAGCTC 1 cut(s) 578
SalI GTCGAC 1 cut(s) 1036
SaqAI TTAA 4 cut(s) 278, 806, 1049, 1419
SatI GCNGC 5 cut(s) 211, 397, 799, 1434, 1437
Sau3AI GATC 6 cut(s) 346, 759, 955, 1022, 1170, 1398
Sau96I GGNCC 5 cut(s) 83, 130, 490, 544, 1178
ScrFI CCNGG 4 cut(s) 168, 536, 995, 1205
SduI GDGCHC 3 cut(s) 11, 578, 1317
SfaNI GCATC 2 cut(s) 444, 1122
SfcI CTRYAG 2 cut(s) 917, 1431
SinI GGWCC 3 cut(s) 83, 490, 1178
SmlI CTYRAG 3 cut(s) 947, 1135, 1358
SmoI CTYRAG 3 cut(s) 947, 1135, 1358
SsiI CCGC 3 cut(s) 210, 397, 810
SspMI CTAG 1 cut(s) 245
SstI GAGCTC 1 cut(s) 578
StyD4I CCNGG 4 cut(s) 166, 534, 993, 1203
StyI CCWWGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 3 cut(s) 1158, 1302, 1357
TaqI TCGA 3 cut(s) 778, 1037, 1152
TatI WGTACW 1 cut(s) 1000
TauI GCSGC 2 cut(s) 213, 399
TfiI GAWTC 4 cut(s) 232, 839, 1044, 1327
Tru1I TTAA 4 cut(s) 278, 806, 1049, 1419
Tru9I TTAA 4 cut(s) 278, 806, 1049, 1419
TscAI CASTG 2 cut(s) 67, 1324
TseI GCWGC 3 cut(s) 798, 1433, 1436
TspDTI ATGAA 5 cut(s) 17, 317, 376, 558, 776
TspRI CASTG 2 cut(s) 67, 1324
VpaK11BI GGWCC 3 cut(s) 83, 490, 1178
XapI RAATTY 6 cut(s) 37, 286, 322, 640, 885, 1101
XceI RCATGY 1 cut(s) 910
XcmI CCANNNNNNNNNTGG 1 cut(s) 1106
XmaJI CCTAGG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 1037
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.