Rorug04G0378300

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014487
Physical Location & Seq
Reverse (-)
54907853 .. 54909222
1370 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0378300.1

Sequence Viewer

Length: 669 bp
ATGATGAGTGAAACTTCATCAAAACCGTCATCCTTTTTCCCACTAGAGATGCGAATTCAATTATCATGGAGGAAATACAAAAACTCAGTTTTGTTCAAACTGCTAAATTTGTGGGCAAAGGCAACCGTATGTGTAATAGTGCTCCCCACAATCTTCTTCATTTGCGTCCCACTCTCTATCCTTCTCATCCCACCGTTATTTATTGCTTCTACATGGGCGTTTTGTATATGCAAGATACTATATTTCTTGTGCCCTCTTAGAGTTGTAGACACCATGAAGTTTTTCAGATTCTGTACCACATTAATATTAGGCAGCAGCAGCACAACCAAGGCTGGTGATAACGACAATGAGGAAAATATGATGAATGAGTTTATAGCCAAGAGCCTGGAGGATAAGGAGCAGTCGATGAGCGTGGTTGAGTTGGACCCCTCGGAGGTGCCGTGTTTCTACGAATCAGATGATCATGAGCAAGAAAACAAAGAAGAACAGAATGTTAATGAAGAAGTGGGTAAAATCGGCATGTACGAGGAAGGGTCATGGCAAGTTTTGGTACCAAAGCCTCCAATACCCAAAAGGAAGAAGGACAAACATTCGTTCCATGACGTTTTGTCGTATTGGAAATGCAAGGAGAAAGGAGAGGCAGCATCAGCTGGCATAAAAGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

222

Amino Acids

25.49

Weight (kDa)

5.4

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23400
fragaria_vesca FvH4_4g37290
malus_domestica MD13G1001800.v1.1
prunus_persica Prupe.1G350800_v2.0.a1
pyrus_communis pycom13g00140 pycom16g00040
rosa_chinensis RchiOBHm_Chr4g0447111
rosa_laevigata RLG00000005604
rosa_multiflora Rmu_sc0010825.1_g000008 Rmu_ssc0000178.1_g000011
rosa_roxburghii Rroxscaffold_5G00387450
rosa_rugosa Rorug04G0378300
rosa_samantha Rh4AG439400 Rh4BG448500 Rh4CG465500 Rh4DG446900
rosa_wichuraiana Rw4G037590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 550
AccB1I GGYRCC 2 cut(s) 436, 550
AccI GTMKAC 1 cut(s) 267
AcsI RAATTY 2 cut(s) 54, 106
AfaI GTAC 3 cut(s) 295, 524, 552
AfiI CCNNNNNNNGG 1 cut(s) 433
AgsI TTSAA 2 cut(s) 59, 97
AhdI GACNNNNNGTC 1 cut(s) 607
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 1 cut(s) 650
AluI AGCT 1 cut(s) 650
Alw21I GWGCWC 1 cut(s) 144
AlwNI CAGNNNCTG 1 cut(s) 291
ApeKI GCWGC 4 cut(s) 312, 315, 318, 641
ApoI RAATTY 2 cut(s) 54, 106
AseI ATTAAT 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 281
Asp718I GGTACC 1 cut(s) 550
AspS9I GGNCC 1 cut(s) 424
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 1 cut(s) 424
BaeGI GKGCMC 1 cut(s) 254
BanI GGYRCC 2 cut(s) 436, 550
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 4 cut(s) 324, 327, 330, 653
BceAI ACGGC 1 cut(s) 424
BciT130I CCWGG 1 cut(s) 386
BclI TGATCA 1 cut(s) 460
BfaI CTAG 1 cut(s) 44
BisI GCNGC 4 cut(s) 313, 316, 319, 642
BlsI GCNGC 4 cut(s) 314, 317, 320, 643
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 424
BmeRI GACNNNNNGTC 1 cut(s) 607
BmgT120I GGNCC 1 cut(s) 424
BmiI GGNNCC 3 cut(s) 426, 438, 552
BmrFI CCNGG 1 cut(s) 386
BmsI GCATC 2 cut(s) 39, 653
BpmI CTGGAG 1 cut(s) 407
BsaJI CCNNGG 2 cut(s) 327, 429
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 1 cut(s) 433
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 2 cut(s) 327, 429
BseGI GGATG 2 cut(s) 29, 186
BseLI CCNNNNNNNGG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 4 cut(s) 324, 327, 330, 653
BshNI GGYRCC 2 cut(s) 436, 550
BsiHKAI GWGCWC 1 cut(s) 144
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 433
BsmFI GGGAC 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 144, 254
Bsp143I GATC 1 cut(s) 460
BspCNI CTCAG 1 cut(s) 98
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 3 cut(s) 426, 438, 552
BspT107I GGYRCC 2 cut(s) 436, 550
BssECI CCNNGG 2 cut(s) 327, 429
BssMI GATC 1 cut(s) 460
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 3 cut(s) 27, 127, 195
BstC8I GCNNGC 1 cut(s) 652
BstDEI CTNAG 2 cut(s) 85, 257
BstF5I GGATG 2 cut(s) 29, 186
BstKTI GATC 1 cut(s) 463
BstMBI GATC 1 cut(s) 460
BstMWI GCNNNNNNNGC 2 cut(s) 318, 647
BstNI CCWGG 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 523
BstSCI CCNGG 1 cut(s) 384
BstSLI GKGCMC 1 cut(s) 254
BstV1I GCAGC 4 cut(s) 324, 327, 330, 653
BstXI CCANNNNNNTGG 1 cut(s) 385
BtsCI GGATG 2 cut(s) 29, 186
Cac8I GCNNGC 1 cut(s) 652
CaiI CAGNNNCTG 1 cut(s) 291
CciI TCATGA 1 cut(s) 463
Cfr13I GGNCC 1 cut(s) 424
CseI GACGC 1 cut(s) 154
Csp6I GTAC 3 cut(s) 294, 523, 551
CviAII CATG 7 cut(s) 66, 213, 274, 464, 520, 537, 599
CviJI RGCY 5 cut(s) 332, 377, 384, 559, 650
CviKI_1 RGCY 5 cut(s) 332, 377, 384, 559, 650
CviQI GTAC 3 cut(s) 294, 523, 551
DdeI CTNAG 2 cut(s) 85, 257
DpnI GATC 1 cut(s) 462
DpnII GATC 1 cut(s) 460
DriI GACNNNNNGTC 1 cut(s) 607
Eam1105I GACNNNNNGTC 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 424
EcoRI GAATTC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 7 cut(s) 69, 216, 277, 467, 523, 540, 602
FaqI GGGAC 1 cut(s) 152
FatI CATG 7 cut(s) 65, 212, 273, 463, 519, 536, 598
FbaI TGATCA 1 cut(s) 460
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 4 cut(s) 313, 316, 319, 642
FokI GGATG 2 cut(s) 16, 173
Fsp4HI GCNGC 4 cut(s) 313, 316, 319, 642
FspBI CTAG 1 cut(s) 44
GluI GCNGC 4 cut(s) 313, 316, 319, 642
GsuI CTGGAG 1 cut(s) 407
HgaI GACGC 1 cut(s) 154
Hin1II CATG 7 cut(s) 69, 216, 277, 467, 523, 540, 602
HinfI GANTC 2 cut(s) 288, 452
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 3 cut(s) 287, 433, 457
Hpy188III TCNNGA 1 cut(s) 464
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 3 cut(s) 191, 524, 574
HpyCH4III ACNGT 3 cut(s) 27, 127, 195
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 2 cut(s) 231, 624
HpyF10VI GCNNNNNNNGC 2 cut(s) 318, 647
HpyF3I CTNAG 2 cut(s) 85, 257
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 7 cut(s) 69, 216, 277, 467, 523, 540, 602
KpnI GGTACC 1 cut(s) 554
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 1 cut(s) 460
LmnI GCTCC 2 cut(s) 147, 397
LpnPI CCDG 4 cut(s) 318, 371, 398, 636
Lsp1109I GCAGC 4 cut(s) 324, 327, 330, 653
LweI GCATC 2 cut(s) 39, 653
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 603
MalI GATC 1 cut(s) 462
MboI GATC 1 cut(s) 460
MboII GAAGA 5 cut(s) 145, 148, 494, 512, 589
MhlI GDGCHC 2 cut(s) 144, 254
MluCI AATT 3 cut(s) 54, 59, 106
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 9 cut(s) 63, 264, 343, 382, 427, 439, 520, 570, 631
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 3 cut(s) 302, 495, 667
MspA1I CMGCKG 1 cut(s) 650
MspR9I CCNGG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 318, 647
NdeII GATC 1 cut(s) 460
NlaIII CATG 7 cut(s) 69, 216, 277, 467, 523, 540, 602
NlaIV GGNNCC 3 cut(s) 426, 438, 552
NspI RCATGY 1 cut(s) 523
PagI TCATGA 1 cut(s) 463
PcsI WCGNNNNNNNCGW 2 cut(s) 437, 522
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 288, 452
PkrI GCNGC 4 cut(s) 314, 317, 320, 643
PshBI ATTAAT 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 3 cut(s) 426, 438, 552
PspPI GGNCC 1 cut(s) 424
PstNI CAGNNNCTG 1 cut(s) 291
PvuII CAGCTG 1 cut(s) 650
RsaI GTAC 3 cut(s) 295, 524, 552
RsaNI GTAC 3 cut(s) 294, 523, 551
SaqAI TTAA 3 cut(s) 302, 495, 667
SatI GCNGC 4 cut(s) 313, 316, 319, 642
Sau3AI GATC 1 cut(s) 460
Sau96I GGNCC 1 cut(s) 424
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 2 cut(s) 144, 254
SetI ASST 3 cut(s) 438, 606, 652
SfaNI GCATC 2 cut(s) 39, 653
SinI GGWCC 1 cut(s) 424
Sse9I AATT 3 cut(s) 54, 59, 106
SspI AATATT 1 cut(s) 306
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 3 cut(s) 27, 127, 195
TaiI ACGT 1 cut(s) 606
TaqI TCGA 1 cut(s) 404
TasI AATT 3 cut(s) 54, 59, 106
TfiI GAWTC 2 cut(s) 288, 452
Tru1I TTAA 3 cut(s) 302, 495, 667
Tru9I TTAA 3 cut(s) 302, 495, 667
TseI GCWGC 4 cut(s) 312, 315, 318, 641
TspDTI ATGAA 5 cut(s) 6, 148, 290, 377, 513
VpaK11BI GGWCC 1 cut(s) 424
VspI ATTAAT 1 cut(s) 302
XapI RAATTY 2 cut(s) 54, 106
XceI RCATGY 1 cut(s) 523
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.