Rh4AG439400

Leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0014487
Physical Location & Seq
Reverse (-)
73100394 .. 73101938
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG439400.1

Sequence Viewer

Length: 1545 bp
ATGAAGGGCACTCTCTCCCCTTCTCTCGGCAACTTGAATTTCTTGGAGGTAATGGTAATCAGTGGCTTGAAACAAATCACAGGTCCAATTCCCGACACCTTCTCCAATCTTGCTCACCTCACCCAATTGGCCCTCGAGGACAATTCCCTCCAAGGGAACATTCCTTCGGGTTTAGGCCGTTTGTCCTCCCTCCAGAGCCTCACAGTCGCTGGCAACCGTTTCAGGGGTCAGATTCCGCCAAGCCTGGGGCGTCTTACCAATCTTGTCCAACTCAACTTAGCAAGAAATTTCCTCACAGGTCCAATTCCACCCACTTTTCAAAACTTTCATGCTCTGCAGTATCTTGATCTCAGCTTCAATATGTTTTCTGGGCTCATTCCAAGTTTTGTAGGGCAGCATCTTCACAACCTTACTTTCATTGACCTCTCCAATAACCAATTTTCTGGTCAAATGCCTATTTCCCTCTTCAGTTTGCCCAACCTTTTGGACTTGTCCTTGGACCATAACCAACTGACAGGGATCATTCCGGTCCAAGTTGGAGGCCTCAAATCCCTTACGAGTCTTTCCTTGAGCAATAATCACCTTAACGGTCATATTCCAGCATCCATTTCAAGTTTGCAGAACCTTTGGCACCTCAACTTATCCAGAAATGGGTTTTCAAGTCCTTTACCAGAGACTTTTGCTAGGGGCATCCCTTCTCTGTTGTCAATAGACCTTTCTTACAACAATCTCAGTCTAGGGACTGTTCCAGATTGGATCAGAAGCCGGCAACTTAGAGATGTTCATCTTGCCGGTTGTCAACTGAGAGGAACCCTCCCAAGCTTCACAAAGCCCGAGTCTTTGAACTCCATAGACTTGTCGCATAACCAATTTACTGATGGAATTCCAAAGCTCAACCTCACTAGCATGTCAAGCTTGCAGAGCCTCAAGCTCTCAAACAATCAACTCAAGTGTGACCTTTCAGAAATTAAATTGCCAGACACCATTTCTCTAGTTGATTTACACTCAAATCAGCTCATTGGATCTCTCTCGAGGATCTTAAGCAACAGGGGAAGCAGCTTTAGCTTTTTGGAGGTTTTAGATGTATCAAACAATCAAATTTCAGGTGGCATTCCAGAGTTTAGACAAGGCTTGAGGCTTAAAGTAGTCAACATAGGAAGCAATAAGATTGCTGGTCACATCCCCATTTCAGTTTCAAACCTGATTCAACTCGAAAGGTTTGATATCTCAAGAAACCAGATAACAGGCACTATCCCCACTAGTTTGGGTTTGTTGGGGAAACTTCAATGGCTTGACCTCTCCATCAATAGACTCACCGGAAAAATCCCAACAAGCTTGTTGGGTATTCAAGGTCTGAGACATGCAAGCTTCAGGGCAAATAAGTTATGTGGAGAGATCCCAGAAGGGAGACCATTCAATATTTTTCCTGCAGCTGCTTATCTCCACAATTTGTGCTTATGTGGCAAGCCTCTACCACCTTGCAGAGGAAAGAATCAAAATAACAAGCAGAGAAGAATGACTCCAGAAATAGAAATGAGCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

514

Amino Acids

56.17

Weight (kDa)

9.57

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 5 - 117 1.5e-09 Leucine-rich repeat region
LRR_8 PF13855 31 - 74 8e-06 Leucine rich repeat
LRR_14 PF23598 107 - 314 3.1e-10 Leucine-rich repeat region
LRR_8 PF13855 136 - 195 2e-08 Leucine rich repeat
LRR_8 PF13855 159 - 218 6e-09 Leucine rich repeat
LRR_8 PF13855 379 - 438 4.8e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014487)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23400
fragaria_vesca FvH4_4g37290
malus_domestica MD13G1001800.v1.1
prunus_persica Prupe.1G350800_v2.0.a1
pyrus_communis pycom13g00140 pycom16g00040
rosa_chinensis RchiOBHm_Chr4g0447111
rosa_laevigata RLG00000005604
rosa_multiflora Rmu_sc0010825.1_g000008 Rmu_ssc0000178.1_g000011
rosa_roxburghii Rroxscaffold_5G00387450
rosa_rugosa Rorug04G0378300
rosa_samantha Rh4AG439400 Rh4BG448500 Rh4CG465500 Rh4DG446900
rosa_wichuraiana Rw4G037590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 134
AccB1I GGYRCC 1 cut(s) 630
AciI CCGC 1 cut(s) 236
AclWI GGATC 5 cut(s) 527, 764, 1030, 1043, 1390
AcsI RAATTY 4 cut(s) 37, 286, 882, 1098
AcuI CTGAAG 2 cut(s) 451, 1354
AcyI GRCGYC 1 cut(s) 250
AfiI CCNNNNNNNGG 6 cut(s) 26, 153, 223, 245, 651, 1484
AflII CTTAAG 1 cut(s) 1039
AhlI ACTAGT 1 cut(s) 1259
AjnI CCWGG 1 cut(s) 243
AjuI GAANNNNNNNTTGG 2 cut(s) 144, 176
Alw26I GTCTC 3 cut(s) 668, 1351, 1402
AlwI GGATC 5 cut(s) 527, 764, 1030, 1043, 1390
AlwNI CAGNNNCTG 1 cut(s) 209
Ama87I CYCGRG 3 cut(s) 134, 833, 1030
AoxI GGCC 3 cut(s) 129, 175, 541
ApeKI GCWGC 4 cut(s) 394, 1056, 1430, 1433
ApoI RAATTY 4 cut(s) 37, 286, 882, 1098
ArsI GACNNNNNNTTYG 4 cut(s) 67, 99, 821, 853
AspS9I GGNCC 5 cut(s) 83, 130, 299, 499, 529
AsuHPI GGTGA 4 cut(s) 107, 112, 572, 1306
AvaI CYCGRG 3 cut(s) 134, 833, 1030
AvaII GGWCC 4 cut(s) 83, 299, 499, 529
BaeGI GKGCMC 1 cut(s) 11
BanI GGYRCC 1 cut(s) 630
BanII GRGCYC 1 cut(s) 375
BbvI GCAGC 4 cut(s) 406, 1068, 1420, 1442
BccI CCATC 2 cut(s) 872, 1310
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 245
BcoDI GTCTC 3 cut(s) 668, 1351, 1402
BcuI ACTAGT 1 cut(s) 1259
BfaI CTAG 5 cut(s) 684, 737, 903, 992, 1260
BfmI CTRYAG 2 cut(s) 335, 1428
BfrI CTTAAG 1 cut(s) 1039
BisI GCNGC 4 cut(s) 395, 1057, 1431, 1434
BlsI GCNGC 4 cut(s) 396, 1058, 1432, 1435
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 4 cut(s) 83, 299, 499, 529
BmeT110I CYCGRG 3 cut(s) 134, 833, 1030
BmgT120I GGNCC 5 cut(s) 83, 130, 299, 499, 529
BmiI GGNNCC 2 cut(s) 632, 811
BmrFI CCNGG 1 cut(s) 245
BmsI GCATC 3 cut(s) 406, 611, 699
BplI GAGNNNNNCTC 2 cut(s) 798, 830
BpmI CTGGAG 2 cut(s) 176, 1506
BpuEI CTTGAG 5 cut(s) 589, 911, 932, 1153, 1213
BsaBI GATNNNNATC 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 250
BsaI GGTCTC 1 cut(s) 1402
BsaJI CCNNGG 3 cut(s) 151, 244, 495
BsaWI WCCGGW 2 cut(s) 526, 1316
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 153, 223, 245, 651, 1484
Bse118I RCCGGY 2 cut(s) 765, 791
Bse1I ACTGG 1 cut(s) 1540
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 3 cut(s) 151, 244, 495
BseGI GGATG 3 cut(s) 602, 690, 1179
BseJI GATNNNNATC 1 cut(s) 783
BseLI CCNNNNNNNGG 6 cut(s) 26, 153, 223, 245, 651, 1484
BseMII CTCAG 4 cut(s) 364, 745, 794, 1346
BseNI ACTGG 1 cut(s) 1540
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 4 cut(s) 406, 1068, 1420, 1442
BshFI GGCC 3 cut(s) 131, 177, 543
BshNI GGYRCC 1 cut(s) 630
BsiHKCI CYCGRG 3 cut(s) 134, 833, 1030
BsiSI CCGG 4 cut(s) 527, 766, 792, 1317
BslFI GGGAC 1 cut(s) 754
BslI CCNNNNNNNGG 6 cut(s) 26, 153, 223, 245, 651, 1484
BsmAI GTCTC 3 cut(s) 668, 1351, 1402
BsmFI GGGAC 1 cut(s) 754
BsmI GAATGC 1 cut(s) 1110
BsnI GGCC 3 cut(s) 131, 177, 543
Bso31I GGTCTC 1 cut(s) 1402
BsoBI CYCGRG 3 cut(s) 134, 833, 1030
Bsp1286I GDGCHC 2 cut(s) 11, 375
Bsp143I GATC 6 cut(s) 346, 519, 756, 1022, 1035, 1395
BspACI CCGC 1 cut(s) 236
BspANI GGCC 3 cut(s) 131, 177, 543
BspCNI CTCAG 4 cut(s) 363, 744, 795, 1347
BspLI GGNNCC 2 cut(s) 632, 811
BspMAI CTGCAG 2 cut(s) 339, 1432
BspPI GGATC 5 cut(s) 527, 764, 1030, 1043, 1390
BspT107I GGYRCC 1 cut(s) 630
BspTI CTTAAG 1 cut(s) 1039
BspTNI GGTCTC 1 cut(s) 1402
BsrFI RCCGGY 2 cut(s) 765, 791
BsrI ACTGG 1 cut(s) 1540
BssAI RCCGGY 2 cut(s) 765, 791
BssECI CCNNGG 3 cut(s) 151, 244, 495
BssMI GATC 6 cut(s) 346, 519, 756, 1022, 1035, 1395
BssNI GRCGYC 1 cut(s) 250
BssT1I CCWWGG 2 cut(s) 151, 495
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 4 cut(s) 205, 218, 590, 745
Bst6I CTCTTC 1 cut(s) 470
BstACI GRCGYC 1 cut(s) 250
BstAFI CTTAAG 1 cut(s) 1039
BstC8I GCNNGC 5 cut(s) 211, 767, 917, 1366, 1466
BstDEI CTNAG 6 cut(s) 277, 350, 731, 773, 803, 1355
BstENI CCTNNNNNAGG 1 cut(s) 1482
BstF5I GGATG 3 cut(s) 602, 690, 1179
BstKTI GATC 6 cut(s) 349, 522, 759, 1025, 1038, 1398
BstMAI GTCTC 3 cut(s) 668, 1351, 1402
BstMBI GATC 6 cut(s) 346, 519, 756, 1022, 1035, 1395
BstMWI GCNNNNNNNGC 4 cut(s) 912, 921, 1062, 1461
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 2 cut(s) 910, 1364
BstSCI CCNGG 1 cut(s) 243
BstSFI CTRYAG 2 cut(s) 335, 1428
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 4 cut(s) 406, 1068, 1420, 1442
BstX2I RGATCY 3 cut(s) 1022, 1035, 1395
BstXI CCANNNNNNTGG 3 cut(s) 443, 484, 1264
BstYI RGATCY 3 cut(s) 1022, 1035, 1395
BsuRI GGCC 3 cut(s) 131, 177, 543
BtsCI GGATG 3 cut(s) 602, 690, 1179
BtsIMutI CAGTG 1 cut(s) 67
Cac8I GCNNGC 5 cut(s) 211, 767, 917, 1366, 1466
CaiI CAGNNNCTG 1 cut(s) 209
Cfr10I RCCGGY 2 cut(s) 765, 791
Cfr13I GGNCC 5 cut(s) 83, 130, 299, 499, 529
CseI GACGC 1 cut(s) 239
CviAII CATG 3 cut(s) 329, 907, 1361
DdeI CTNAG 6 cut(s) 277, 350, 731, 773, 803, 1355
DpnI GATC 6 cut(s) 348, 521, 758, 1024, 1037, 1397
DpnII GATC 6 cut(s) 346, 519, 756, 1022, 1035, 1395
Eam1104I CTCTTC 1 cut(s) 470
EarI CTCTTC 1 cut(s) 470
EciI GGCGGA 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 151, 495
Eco147I AGGCCT 1 cut(s) 543
Eco24I GRGCYC 1 cut(s) 375
Eco31I GGTCTC 1 cut(s) 1402
Eco32I GATATC 1 cut(s) 1225
Eco47I GGWCC 4 cut(s) 83, 299, 499, 529
Eco57I CTGAAG 2 cut(s) 451, 1354
Eco88I CYCGRG 3 cut(s) 134, 833, 1030
EcoNI CCTNNNNNAGG 1 cut(s) 1482
EcoRI GAATTC 1 cut(s) 882
EcoRII CCWGG 1 cut(s) 243
EcoRV GATATC 1 cut(s) 1225
EcoT14I CCWWGG 2 cut(s) 151, 495
EcoT38I GRGCYC 1 cut(s) 375
ErhI CCWWGG 2 cut(s) 151, 495
FaeI CATG 3 cut(s) 332, 910, 1364
FaqI GGGAC 1 cut(s) 754
FatI CATG 3 cut(s) 328, 906, 1360
Fnu4HI GCNGC 4 cut(s) 395, 1057, 1431, 1434
FokI GGATG 3 cut(s) 589, 677, 1166
FriOI GRGCYC 1 cut(s) 375
Fsp4HI GCNGC 4 cut(s) 395, 1057, 1431, 1434
FspBI CTAG 5 cut(s) 684, 737, 903, 992, 1260
GluI GCNGC 4 cut(s) 395, 1057, 1431, 1434
GsuI CTGGAG 2 cut(s) 176, 1506
HaeIII GGCC 3 cut(s) 131, 177, 543
HapII CCGG 4 cut(s) 527, 766, 792, 1317
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 3 cut(s) 332, 910, 1364
HincII GTYRAC 2 cut(s) 800, 1150
HindII GTYRAC 2 cut(s) 800, 1150
HindIII AAGCTT 4 cut(s) 820, 913, 1333, 1366
HinfI GANTC 7 cut(s) 232, 559, 836, 1204, 1311, 1492, 1519
HpaII CCGG 4 cut(s) 527, 766, 792, 1317
HphI GGTGA 4 cut(s) 107, 112, 572, 1306
Hpy166II GTNNAC 2 cut(s) 800, 1150
Hpy188I TCNGA 4 cut(s) 231, 761, 964, 1356
Hpy188III TCNNGA 9 cut(s) 92, 193, 344, 645, 749, 1030, 1115, 1230, 1523
Hpy8I GTNNAC 2 cut(s) 800, 1150
HpyAV CCTTC 5 cut(s) 30, 109, 174, 705, 1397
HpyCH4III ACNGT 4 cut(s) 205, 218, 590, 745
HpyCH4V TGCA 6 cut(s) 337, 619, 919, 1364, 1430, 1482
HpyF10VI GCNNNNNNNGC 4 cut(s) 912, 921, 1062, 1461
HpyF3I CTNAG 6 cut(s) 277, 350, 731, 773, 803, 1355
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 3 cut(s) 332, 910, 1364
KroI GCCGGC 1 cut(s) 765
KroNI GCCGGC 1 cut(s) 767
Kzo9I GATC 6 cut(s) 346, 519, 756, 1022, 1035, 1395
Lsp1109I GCAGC 4 cut(s) 406, 1068, 1420, 1442
LweI GCATC 3 cut(s) 406, 611, 699
MaeI CTAG 5 cut(s) 684, 737, 903, 992, 1260
MaeIII GTNAC 2 cut(s) 953, 1175
MalI GATC 6 cut(s) 348, 521, 758, 1024, 1037, 1397
MboI GATC 6 cut(s) 346, 519, 756, 1022, 1035, 1395
MboII GAAGA 3 cut(s) 392, 457, 1524
MfeI CAATTG 1 cut(s) 125
MflI RGATCY 3 cut(s) 1022, 1035, 1395
MhlI GDGCHC 2 cut(s) 11, 375
MlyI GAGTC 4 cut(s) 568, 845, 1305, 1513
MmeI TCCRAC 2 cut(s) 292, 517
MroNI GCCGGC 1 cut(s) 765
MseI TTAA 4 cut(s) 585, 969, 1040, 1140
MslI CAYNNNNRTG 1 cut(s) 905
MspA1I CMGCKG 1 cut(s) 1433
MspCI CTTAAG 1 cut(s) 1039
MspI CCGG 4 cut(s) 527, 766, 792, 1317
MspR9I CCNGG 1 cut(s) 245
MunI CAATTG 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 1110
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 4 cut(s) 912, 921, 1062, 1461
NaeI GCCGGC 1 cut(s) 767
NdeII GATC 6 cut(s) 346, 519, 756, 1022, 1035, 1395
NgoMIV GCCGGC 1 cut(s) 765
NlaIII CATG 3 cut(s) 332, 910, 1364
NlaIV GGNNCC 2 cut(s) 632, 811
NmeAIII GCCGAG 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 953, 1175
NspI RCATGY 2 cut(s) 910, 1364
PaeR7I CTCGAG 2 cut(s) 134, 1030
PceI AGGCCT 1 cut(s) 543
PctI GAATGC 1 cut(s) 1110
PdiI GCCGGC 1 cut(s) 767
PfeI GAWTC 3 cut(s) 232, 1204, 1492
PkrI GCNGC 4 cut(s) 396, 1058, 1432, 1435
PleI GAGTC 4 cut(s) 567, 844, 1305, 1513
PpsI GAGTC 4 cut(s) 567, 844, 1305, 1513
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 2 cut(s) 632, 811
PspPI GGNCC 5 cut(s) 83, 130, 299, 499, 529
PspXI VCTCGAGB 1 cut(s) 134
PstI CTGCAG 2 cut(s) 339, 1432
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 3 cut(s) 1022, 1035, 1395
PvuII CAGCTG 1 cut(s) 1433
RseI CAYNNNNRTG 1 cut(s) 905
SaqAI TTAA 4 cut(s) 585, 969, 1040, 1140
SatI GCNGC 4 cut(s) 395, 1057, 1431, 1434
Sau3AI GATC 6 cut(s) 346, 519, 756, 1022, 1035, 1395
Sau96I GGNCC 5 cut(s) 83, 130, 299, 499, 529
SchI GAGTC 4 cut(s) 568, 845, 1305, 1513
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 2 cut(s) 11, 375
SfaNI GCATC 3 cut(s) 406, 611, 699
SfcI CTRYAG 2 cut(s) 335, 1428
Sfr274I CTCGAG 2 cut(s) 134, 1030
SinI GGWCC 4 cut(s) 83, 299, 499, 529
SlaI CTCGAG 2 cut(s) 134, 1030
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 8 cut(s) 134, 568, 926, 947, 1030, 1039, 1132, 1228
SmoI CTYRAG 8 cut(s) 134, 568, 926, 947, 1030, 1039, 1132, 1228
SpeI ACTAGT 1 cut(s) 1259
SseBI AGGCCT 1 cut(s) 543
SsiI CCGC 1 cut(s) 236
SspI AATATT 1 cut(s) 1420
SspMI CTAG 5 cut(s) 684, 737, 903, 992, 1260
StuI AGGCCT 1 cut(s) 543
StyD4I CCNGG 1 cut(s) 243
StyI CCWWGG 2 cut(s) 151, 495
TaaI ACNGT 4 cut(s) 205, 218, 590, 745
TaqI TCGA 3 cut(s) 135, 1031, 1212
TfiI GAWTC 3 cut(s) 232, 1204, 1492
Tru1I TTAA 4 cut(s) 585, 969, 1040, 1140
Tru9I TTAA 4 cut(s) 585, 969, 1040, 1140
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 2 cut(s) 953, 1175
TseI GCWGC 4 cut(s) 394, 1056, 1430, 1433
Tsp45I GTSAC 2 cut(s) 953, 1175
TspDTI ATGAA 4 cut(s) 17, 317, 406, 773
TspRI CASTG 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 1039
VpaK11BI GGWCC 4 cut(s) 83, 299, 499, 529
XagI CCTNNNNNAGG 1 cut(s) 1482
XapI RAATTY 4 cut(s) 37, 286, 882, 1098
XceI RCATGY 2 cut(s) 910, 1364
XcmI CCANNNNNNNNNTGG 1 cut(s) 875
XhoI CTCGAG 2 cut(s) 134, 1030
XspI CTAG 5 cut(s) 684, 737, 903, 992, 1260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.