Prupe.1G429200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018119
Physical Location & Seq
Forward (+)
36837102 .. 36837793
692 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G429200.1

Sequence Viewer

Length: 291 bp
ATGAAGAAGCACCATGGCTTCATCAAAGTCTTTGCAATGAACTCCATCTCTGCAGTCATCTTTCTCTTCCTCATCCTCTCATCTGCTGTGGAAGTTGAAGGCTCCAGGCCTCTTGTGCATAAGCTCTCTTCTAATTCTAATTCAATCAGCAAGTTTCAGATTGTTCGGGCATATTCTGGTCCCAGTAGAAGAGGGGTTGGCCATGCTCTTATGCATCTTAATCTTTCTCCTGCTCCGATCAAGATATCTGAAGCATATTCTGGTCCTGACAAAGGTGGGGATGGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.33

Weight (kDa)

10.09

Isoelectric Point (pI)

39.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018119)

Species Orthologous Gene IDs
prunus_persica Prupe.1G429200_v2.0.a1 Prupe.8G136600_v2.0.a1
pyrus_communis pycom10g08480
rosa_chinensis RchiOBHm_Chr6g0308871
rosa_laevigata RLG00000010611
rosa_roxburghii Rroxscaffold_7G00159840
rosa_rugosa Rorug06G0368800
rosa_samantha Rh6AG480300 Rh6BG489800 Rh6CG495200 Rh6DG480600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 199, 283
AcuI CTGAAG 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 272
AgsI TTSAA 2 cut(s) 98, 144
AjnI CCWGG 1 cut(s) 104
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
AoxI GGCC 3 cut(s) 107, 199, 283
AspS9I GGNCC 2 cut(s) 179, 263
AvaII GGWCC 2 cut(s) 179, 263
BalI TGGCCA 2 cut(s) 201, 285
BccI CCATC 2 cut(s) 53, 275
BciT130I CCWGG 1 cut(s) 106
BfaI CTAG 1 cut(s) 289
BfmI CTRYAG 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 106
Bme18I GGWCC 2 cut(s) 179, 263
BmgT120I GGNCC 2 cut(s) 179, 263
BmiI GGNNCC 2 cut(s) 103, 181
BmrFI CCNGG 1 cut(s) 106
BmrI ACTGGG 1 cut(s) 177
BmsI GCATC 1 cut(s) 223
BmuI ACTGGG 1 cut(s) 177
BpmI CTGGAG 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 183
Bse3DI GCAATG 1 cut(s) 42
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 13
BseGI GGATG 2 cut(s) 72, 286
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMI GCAATG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 183
BshFI GGCC 3 cut(s) 109, 201, 285
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 165
BsnI GGCC 3 cut(s) 109, 201, 285
Bsp143I GATC 1 cut(s) 237
Bsp19I CCATGG 1 cut(s) 13
BspANI GGCC 3 cut(s) 109, 201, 285
BspLI GGNNCC 2 cut(s) 103, 181
BspMAI CTGCAG 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 42
BsrI ACTGG 1 cut(s) 183
BssECI CCNNGG 1 cut(s) 13
BssMI GATC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 106
Bst6I CTCTTC 3 cut(s) 71, 133, 184
BstDSI CCRYGG 1 cut(s) 13
BstENI CCTNNNNNAGG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 72, 286
BstKTI GATC 1 cut(s) 240
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 51
BsuRI GGCC 3 cut(s) 109, 201, 285
BtgI CCRYGG 1 cut(s) 13
BtsCI GGATG 2 cut(s) 72, 286
Cfr13I GGNCC 2 cut(s) 179, 263
CviAII CATG 2 cut(s) 14, 203
CviJI RGCY 6 cut(s) 18, 102, 109, 124, 201, 285
CviKI_1 RGCY 6 cut(s) 18, 102, 109, 124, 201, 285
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EaeI YGGCCR 2 cut(s) 199, 283
Eam1104I CTCTTC 3 cut(s) 71, 133, 184
EarI CTCTTC 3 cut(s) 71, 133, 184
Eco130I CCWWGG 1 cut(s) 13
Eco147I AGGCCT 1 cut(s) 109
Eco32I GATATC 1 cut(s) 246
Eco47I GGWCC 2 cut(s) 179, 263
Eco57I CTGAAG 1 cut(s) 270
EcoNI CCTNNNNNAGG 1 cut(s) 270
EcoRII CCWGG 1 cut(s) 104
EcoRV GATATC 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 13
FaeI CATG 2 cut(s) 17, 206
FaiI YATR 6 cut(s) 15, 120, 172, 204, 212, 256
FaqI GGGAC 1 cut(s) 165
FatI CATG 2 cut(s) 13, 202
FokI GGATG 1 cut(s) 59
FspBI CTAG 1 cut(s) 289
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 3 cut(s) 109, 201, 285
Hin1II CATG 2 cut(s) 17, 206
Hpy188I TCNGA 3 cut(s) 159, 237, 250
Hpy188III TCNNGA 2 cut(s) 241, 266
HpyAV CCTTC 1 cut(s) 92
HpyCH4V TGCA 4 cut(s) 35, 53, 118, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 115
Hsp92II CATG 2 cut(s) 17, 206
Kzo9I GATC 1 cut(s) 237
LmnI GCTCC 2 cut(s) 107, 238
LpnPI CCDG 7 cut(s) 91, 118, 162, 196, 243, 246, 279
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 289
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MboII GAAGA 4 cut(s) 16, 58, 120, 201
MlsI TGGCCA 2 cut(s) 201, 285
MluCI AATT 2 cut(s) 133, 139
MluNI TGGCCA 2 cut(s) 201, 285
MnlI CCTC 4 cut(s) 80, 86, 120, 185
Mox20I TGGCCA 2 cut(s) 201, 285
Mph1103I ATGCAT 1 cut(s) 216
MscI TGGCCA 2 cut(s) 201, 285
MseI TTAA 1 cut(s) 219
Msp20I TGGCCA 2 cut(s) 201, 285
MspR9I CCNGG 1 cut(s) 106
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 115
NcoI CCATGG 1 cut(s) 13
NdeII GATC 1 cut(s) 237
NlaIII CATG 2 cut(s) 17, 206
NlaIV GGNNCC 2 cut(s) 103, 181
NsiI ATGCAT 1 cut(s) 216
PceI AGGCCT 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspN4I GGNNCC 2 cut(s) 103, 181
PspPI GGNCC 2 cut(s) 179, 263
PstI CTGCAG 1 cut(s) 55
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 1 cut(s) 237
Sau96I GGNCC 2 cut(s) 179, 263
ScrFI CCNGG 1 cut(s) 106
SetI ASST 2 cut(s) 126, 277
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 2 cut(s) 179, 263
Sse9I AATT 2 cut(s) 133, 139
SseBI AGGCCT 1 cut(s) 109
SspMI CTAG 1 cut(s) 289
StuI AGGCCT 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 104
StyI CCWWGG 1 cut(s) 13
TasI AATT 2 cut(s) 133, 139
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TspDTI ATGAA 3 cut(s) 10, 17, 53
VpaK11BI GGWCC 2 cut(s) 179, 263
XagI CCTNNNNNAGG 1 cut(s) 270
XspI CTAG 1 cut(s) 289
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.