Rorug06G0368800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0018119
Physical Location & Seq
Reverse (-)
51605622 .. 51605948
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0368800.1

Sequence Viewer

Length: 327 bp
ATGTTCTTCTTCTTTGCTGGAGGGTTAGAGCAGCAAGTCCGGCAGGTGCTGCAATCCGGTGCGGGCAGGTGCATGGTGTGCAGGTCGCCGGCGGATTTGGTGGAATACGAGAAGGTGCTGAAGCTCTTCTTCGTCCCCGTGTGGCGGTGGCCCGGGAGAGAGCCTCTGATGCACTGCAACAACTGCAAGCTCTTGTTTCCTCAGAGCTATTCTCTCCCGCCTCCCAGGGATGATTCCACGGCGGAGGAGCTGCTGCGGTGTCGTTTTTGTGATCGGAGGGTGGAGTCTGAGTTCAGCTTCTGCCCATATTGTGGCTCCGCTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.54

Weight (kDa)

7.51

Isoelectric Point (pI)

75.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_15 PF17032 23 - 105 1.7e-22 zinc-ribbon family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018119)

Species Orthologous Gene IDs
prunus_persica Prupe.1G429200_v2.0.a1 Prupe.8G136600_v2.0.a1
pyrus_communis pycom10g08480
rosa_chinensis RchiOBHm_Chr6g0308871
rosa_laevigata RLG00000010611
rosa_roxburghii Rroxscaffold_7G00159840
rosa_rugosa Rorug06G0368800
rosa_samantha Rh6AG480300 Rh6BG489800 Rh6CG495200 Rh6DG480600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 34, 57
Acc36I ACCTGC 3 cut(s) 34, 57, 72
AccB7I CCANNNNNTGG 1 cut(s) 311
AccBSI CCGCTC 1 cut(s) 320
AciI CCGC 7 cut(s) 62, 92, 145, 218, 242, 256, 318
AcuI CTGAAG 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 144, 311
AjnI CCWGG 1 cut(s) 224
AloI GAACNNNNNNTCC 2 cut(s) 275, 307
AluBI AGCT 5 cut(s) 124, 190, 207, 250, 297
AluI AGCT 5 cut(s) 124, 190, 207, 250, 297
AlwNI CAGNNNCTG 2 cut(s) 49, 300
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 4 cut(s) 31, 49, 250, 253
Asp700I GAANNNNTTC 1 cut(s) 125
AspS9I GGNCC 1 cut(s) 150
AsuC2I CCSGG 2 cut(s) 153, 154
AvaI CYCGRG 1 cut(s) 152
BbvI GCAGC 4 cut(s) 36, 43, 237, 240
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 226
BcnI CCSGG 2 cut(s) 153, 154
BfuAI ACCTGC 3 cut(s) 34, 57, 72
BisI GCNGC 4 cut(s) 32, 50, 251, 254
BlsI GCNGC 4 cut(s) 33, 51, 252, 255
Bme1390I CCNGG 3 cut(s) 153, 154, 226
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 3 cut(s) 153, 154, 226
BmsI GCATC 1 cut(s) 159
BplI GAGNNNNNCTC 4 cut(s) 148, 180, 196, 228
BpmI CTGGAG 1 cut(s) 39
BpuMI CCSGG 2 cut(s) 153, 154
BsaJI CCNNGG 4 cut(s) 152, 224, 225, 237
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 275, 305
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 311
Bse118I RCCGGY 1 cut(s) 88
BseBI CCWGG 1 cut(s) 226
BseDI CCNNGG 4 cut(s) 152, 224, 225, 237
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 2 cut(s) 144, 311
BseMII CTCAG 2 cut(s) 215, 279
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 4 cut(s) 36, 43, 237, 240
BsgI GTGCAG 1 cut(s) 100
BshFI GGCC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 4 cut(s) 40, 57, 89, 153
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 2 cut(s) 144, 311
BsmFI GGGAC 1 cut(s) 119
BsnI GGCC 1 cut(s) 151
BsoBI CYCGRG 1 cut(s) 152
Bsp143I GATC 1 cut(s) 271
BspACI CCGC 7 cut(s) 62, 92, 145, 218, 242, 256, 318
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 214, 280
BspLI GGNNCC 1 cut(s) 316
BspMI ACCTGC 3 cut(s) 34, 57, 72
BspQI GCTCTTC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 4 cut(s) 152, 224, 225, 237
BssMI GATC 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 131
BstAPI GCANNNNNTGC 3 cut(s) 49, 78, 183
BstC8I GCNNGC 3 cut(s) 64, 90, 188
BstDEI CTNAG 2 cut(s) 201, 288
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 5 cut(s) 40, 49, 78, 169, 183
BstNI CCWGG 1 cut(s) 226
BstSCI CCNGG 3 cut(s) 151, 152, 224
BstV1I GCAGC 4 cut(s) 36, 43, 237, 240
BsuRI GGCC 1 cut(s) 151
BtgI CCRYGG 1 cut(s) 237
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 1 cut(s) 172
BveI ACCTGC 3 cut(s) 34, 57, 72
Cac8I GCNNGC 3 cut(s) 64, 90, 188
CaiI CAGNNNCTG 2 cut(s) 49, 300
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 150
Cfr9I CCCGGG 1 cut(s) 152
CviAII CATG 1 cut(s) 73
CviJI RGCY 8 cut(s) 124, 151, 163, 190, 207, 250, 297, 315
CviKI_1 RGCY 8 cut(s) 124, 151, 163, 190, 207, 250, 297, 315
DdeI CTNAG 2 cut(s) 201, 288
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 2 cut(s) 107, 257
Eco57I CTGAAG 1 cut(s) 140
Eco88I CYCGRG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 224
FaeI CATG 1 cut(s) 76
FaiI YATR 2 cut(s) 74, 307
FalI AAGNNNNNCTT 2 cut(s) 113, 145
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 72
FauI CCCGC 2 cut(s) 55, 225
Fnu4HI GCNGC 4 cut(s) 32, 50, 251, 254
FokI GGATG 1 cut(s) 242
Fsp4HI GCNGC 4 cut(s) 32, 50, 251, 254
GluI GCNGC 4 cut(s) 32, 50, 251, 254
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 151
HapII CCGG 4 cut(s) 40, 57, 89, 153
Hin1II CATG 1 cut(s) 76
HinfI GANTC 2 cut(s) 233, 284
HpaII CCGG 4 cut(s) 40, 57, 89, 153
Hpy188I TCNGA 4 cut(s) 168, 204, 276, 289
HpyAV CCTTC 1 cut(s) 106
HpyCH4V TGCA 6 cut(s) 52, 72, 81, 172, 177, 186
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 49, 78, 169, 183
HpyF3I CTNAG 2 cut(s) 201, 288
Hsp92II CATG 1 cut(s) 76
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Kzo9I GATC 1 cut(s) 271
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 2 cut(s) 247, 320
Lsp1109I GCAGC 4 cut(s) 36, 43, 237, 240
LweI GCATC 1 cut(s) 159
MalI GATC 1 cut(s) 273
MbiI CCGCTC 1 cut(s) 320
MboI GATC 1 cut(s) 271
MboII GAAGA 2 cut(s) 118, 121
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 6 cut(s) 14, 174, 210, 231, 238, 270
MreI CGCCGGCG 1 cut(s) 88
MroNI GCCGGC 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 125
MspI CCGG 4 cut(s) 40, 57, 89, 153
MspR9I CCNGG 3 cut(s) 153, 154, 226
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 5 cut(s) 40, 49, 78, 169, 183
NaeI GCCGGC 1 cut(s) 90
NciI CCSGG 2 cut(s) 153, 154
NdeII GATC 1 cut(s) 271
NgoMIV GCCGGC 1 cut(s) 88
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 316
PaqCI CACCTGC 2 cut(s) 34, 57
PasI CCCWGGG 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 131
PdiI GCCGGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 233
PflMI CCANNNNNTGG 1 cut(s) 311
PkrI GCNGC 4 cut(s) 33, 51, 252, 255
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
Psp6I CCWGG 1 cut(s) 224
PspGI CCWGG 1 cut(s) 224
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 1 cut(s) 150
PstNI CAGNNNCTG 2 cut(s) 49, 300
SapI GCTCTTC 1 cut(s) 131
SatI GCNGC 4 cut(s) 32, 50, 251, 254
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 3 cut(s) 153, 154, 226
SetI ASST 9 cut(s) 48, 71, 86, 117, 126, 192, 209, 252, 299
SfaNI GCATC 1 cut(s) 159
SgrAI CRCCGGYG 1 cut(s) 88
SmaI CCCGGG 1 cut(s) 154
SsiI CCGC 7 cut(s) 62, 92, 145, 218, 242, 256, 318
StyD4I CCNGG 3 cut(s) 151, 152, 224
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 1 cut(s) 179
TseI GCWGC 4 cut(s) 31, 49, 250, 253
TspMI CCCGGG 1 cut(s) 152
TspRI CASTG 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 311
XmaI CCCGGG 1 cut(s) 152
XmnI GAANNNNTTC 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.