Rh6BG489800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018119
Physical Location & Seq
Reverse (-)
69353006 .. 69353796
791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG489800.1

Sequence Viewer

Length: 327 bp
ATGAAGCACCAGCATGAAGGCATCATAAACTTCTCCATCTCCAGGTTCTTCTTCCTCCTCCTCATACTCACGTCGTCGGCTATGGAACTAGTCGGAGGCTCGAGGCCTCTTCTGTATAACAAGAAGCTGATCATCTCATCTTCCAATAGCAGCAACAGCAGGAGCAGGTTTAAGATAGTTGAAGCATATTCTGGTCCTAGTAGAAGAGGGGTAGGCCATACAGGCGATACTCTTTATCCAACTACCGCTACTCCAGTGATGAAGAGGAAGATGGTGACCATAGCTGAAGCATATTCTGGTCCTAGTAAAGGAGGCAGTGGACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.76

Weight (kDa)

10.39

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018119)

Species Orthologous Gene IDs
prunus_persica Prupe.1G429200_v2.0.a1 Prupe.8G136600_v2.0.a1
pyrus_communis pycom10g08480
rosa_chinensis RchiOBHm_Chr6g0308871
rosa_laevigata RLG00000010611
rosa_roxburghii Rroxscaffold_7G00159840
rosa_rugosa Rorug06G0368800
rosa_samantha Rh6AG480300 Rh6BG489800 Rh6CG495200 Rh6DG480600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 156
AciI CCGC 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 42, 308
AgsI TTSAA 1 cut(s) 182
AhlI ACTAGT 1 cut(s) 88
AjiI CACGTC 1 cut(s) 72
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 2 cut(s) 127, 284
AluI AGCT 2 cut(s) 127, 284
Ama87I CYCGRG 1 cut(s) 100
AoxI GGCC 2 cut(s) 104, 214
ApeKI GCWGC 1 cut(s) 150
AspS9I GGNCC 2 cut(s) 194, 299
AsuHPI GGTGA 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 100
AvaII GGWCC 2 cut(s) 194, 299
BbvI GCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 44, 265
BciT130I CCWGG 1 cut(s) 43
BclI TGATCA 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 88
BfaI CTAG 4 cut(s) 89, 198, 303, 325
BfuAI ACCTGC 1 cut(s) 156
BglI GCCNNNNNGGC 1 cut(s) 222
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 2 cut(s) 194, 299
BmeT110I CYCGRG 1 cut(s) 100
BmgBI CACGTC 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 194, 299
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 30
BpmI CTGGAG 2 cut(s) 25, 237
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 308
Bse1I ACTGG 1 cut(s) 254
BseBI CCWGG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 42, 308
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 2 cut(s) 47, 50
BseXI GCAGC 1 cut(s) 162
BshFI GGCC 2 cut(s) 106, 216
BsiHKCI CYCGRG 1 cut(s) 100
BslI CCNNNNNNNGG 2 cut(s) 42, 308
BsnI GGCC 2 cut(s) 106, 216
BsoBI CYCGRG 1 cut(s) 100
Bsp143I GATC 1 cut(s) 129
BspACI CCGC 1 cut(s) 246
BspANI GGCC 2 cut(s) 106, 216
BspMI ACCTGC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 254
BssMI GATC 1 cut(s) 129
Bst2UI CCWGG 1 cut(s) 43
Bst6I CTCTTC 3 cut(s) 114, 199, 257
BstEII GGTNACC 1 cut(s) 274
BstENI CCTNNNNNAGG 1 cut(s) 306
BstKTI GATC 1 cut(s) 132
BstMBI GATC 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 156, 222
BstNI CCWGG 1 cut(s) 43
BstPI GGTNACC 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 162
BsuRI GGCC 2 cut(s) 106, 216
BtrI CACGTC 1 cut(s) 72
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 261, 322
BveI ACCTGC 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 194, 299
CviAII CATG 1 cut(s) 14
CviJI RGCY 6 cut(s) 80, 99, 106, 127, 216, 284
CviKI_1 RGCY 6 cut(s) 80, 99, 106, 127, 216, 284
DpnI GATC 1 cut(s) 131
DpnII GATC 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 114, 199, 257
EarI CTCTTC 3 cut(s) 114, 199, 257
Eco147I AGGCCT 1 cut(s) 106
Eco47I GGWCC 2 cut(s) 194, 299
Eco57I CTGAAG 1 cut(s) 306
Eco88I CYCGRG 1 cut(s) 100
Eco91I GGTNACC 1 cut(s) 274
EcoNI CCTNNNNNAGG 1 cut(s) 306
EcoO65I GGTNACC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 41
FaeI CATG 1 cut(s) 17
FaiI YATR 9 cut(s) 15, 26, 65, 83, 117, 187, 219, 281, 292
FatI CATG 1 cut(s) 13
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 4 cut(s) 89, 198, 303, 325
GluI GCNGC 1 cut(s) 151
GsuI CTGGAG 2 cut(s) 25, 237
HaeIII GGCC 2 cut(s) 106, 216
Hin1II CATG 1 cut(s) 17
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 1 cut(s) 95
Hpy8I GTNNAC 1 cut(s) 320
Hpy99I CGWCG 2 cut(s) 76, 79
HpyAV CCTTC 1 cut(s) 11
HpyCH4IV ACGT 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 2 cut(s) 156, 222
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 9 cut(s) 23, 28, 55, 145, 151, 177, 207, 267, 282
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 1 cut(s) 30
MaeI CTAG 4 cut(s) 89, 198, 303, 325
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 274
MalI GATC 1 cut(s) 131
MboI GATC 1 cut(s) 129
MboII GAAGA 7 cut(s) 40, 43, 101, 132, 216, 274, 280
MmeI TCCRAC 2 cut(s) 73, 263
MnlI CCTC 9 cut(s) 65, 68, 71, 89, 96, 117, 200, 258, 305
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 43
MvaI CCWGG 1 cut(s) 43
MwoI GCNNNNNNNGC 2 cut(s) 156, 222
NdeII GATC 1 cut(s) 129
NlaIII CATG 1 cut(s) 17
NmuCI GTSAC 1 cut(s) 274
PaeR7I CTCGAG 1 cut(s) 100
PceI AGGCCT 1 cut(s) 106
PkrI GCNGC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 41
PspEI GGTNACC 1 cut(s) 274
PspGI CCWGG 1 cut(s) 41
PspPI GGNCC 2 cut(s) 194, 299
PspXI VCTCGAGB 1 cut(s) 100
RseI CAYNNNNRTG 1 cut(s) 12
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 1 cut(s) 129
Sau96I GGNCC 2 cut(s) 194, 299
ScrFI CCNGG 1 cut(s) 43
SetI ASST 5 cut(s) 47, 74, 129, 170, 286
SfaNI GCATC 1 cut(s) 30
Sfr274I CTCGAG 1 cut(s) 100
SinI GGWCC 2 cut(s) 194, 299
SlaI CTCGAG 1 cut(s) 100
SmiMI CAYNNNNRTG 1 cut(s) 12
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
SpeI ACTAGT 1 cut(s) 88
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 1 cut(s) 246
SspMI CTAG 4 cut(s) 89, 198, 303, 325
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 41
TaiI ACGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 101
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 2 cut(s) 261, 322
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 274
TspDTI ATGAA 3 cut(s) 17, 30, 275
TspRI CASTG 2 cut(s) 261, 322
VpaK11BI GGWCC 2 cut(s) 194, 299
XagI CCTNNNNNAGG 1 cut(s) 306
XhoI CTCGAG 1 cut(s) 100
XspI CTAG 4 cut(s) 89, 198, 303, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.