pycom10g08480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0018119
Physical Location & Seq
Reverse (-)
11146012 .. 11146215
204 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g08480.1

Sequence Viewer

Length: 204 bp
ATGAAATATCAAAATTCTCTTCTGTTCGCTTTCAATGCCATTTCCATGTTCATCATCTTCGTTCTCCCACTCTTTTACTCTGCGCATGTTGAGGCCTCGAGACCTCTTATAGGTGCTCAAGATAAACGTACTTTTAAGTCCATAAAGAGTTTCCTTGTAGCGCAAGCTTACTCCGGGCCAAGCCGCAGGGGACCTGGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.52

Weight (kDa)

10.37

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018119)

Species Orthologous Gene IDs
prunus_persica Prupe.1G429200_v2.0.a1 Prupe.8G136600_v2.0.a1
pyrus_communis pycom10g08480
rosa_chinensis RchiOBHm_Chr6g0308871
rosa_laevigata RLG00000010611
rosa_roxburghii Rroxscaffold_7G00159840
rosa_rugosa Rorug06G0368800
rosa_samantha Rh6AG480300 Rh6BG489800 Rh6CG495200 Rh6DG480600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 84
AciI CCGC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 1 cut(s) 34
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 1 cut(s) 167
AluI AGCT 1 cut(s) 167
Alw21I GWGCWC 1 cut(s) 118
Alw26I GTCTC 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 2 cut(s) 93, 176
ApoI RAATTY 1 cut(s) 13
AspLEI GCGC 2 cut(s) 85, 163
AspS9I GGNCC 2 cut(s) 176, 191
AsuC2I CCSGG 1 cut(s) 175
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 195
BcnI CCSGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 94
BisI GCNGC 1 cut(s) 184
BlsI GCNGC 1 cut(s) 185
Bme1390I CCNGG 2 cut(s) 175, 195
Bme18I GGWCC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 2 cut(s) 176, 191
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 2 cut(s) 175, 195
BpuEI CTTGAG 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 175
BsaI GGTCTC 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 110
BseBI CCWGG 1 cut(s) 195
BseLI CCNNNNNNNGG 1 cut(s) 110
BshFI GGCC 2 cut(s) 95, 178
BsiHKAI GWGCWC 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 97
BsiSI CCGG 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 94
BsnI GGCC 2 cut(s) 95, 178
Bso31I GGTCTC 1 cut(s) 94
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 118
BspACI CCGC 1 cut(s) 184
BspANI GGCC 2 cut(s) 95, 178
BspLI GGNNCC 1 cut(s) 192
BspTNI GGTCTC 1 cut(s) 94
Bst2UI CCWGG 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 24
BstC8I GCNNGC 1 cut(s) 165
BstENI CCTNNNNNAGG 1 cut(s) 108
BstHHI GCGC 2 cut(s) 85, 163
BstMAI GTCTC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 173, 193
BsuRI GGCC 2 cut(s) 95, 178
Cac8I GCNNGC 1 cut(s) 165
CfoI GCGC 2 cut(s) 85, 163
Cfr13I GGNCC 2 cut(s) 176, 191
CsiI ACCWGGT 1 cut(s) 193
Csp6I GTAC 1 cut(s) 129
CviAII CATG 2 cut(s) 46, 86
CviJI RGCY 4 cut(s) 95, 167, 178, 183
CviKI_1 RGCY 4 cut(s) 95, 167, 178, 183
CviQI GTAC 1 cut(s) 129
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 97
EcoNI CCTNNNNNAGG 1 cut(s) 108
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 193
FaeI CATG 2 cut(s) 49, 89
FaiI YATR 4 cut(s) 47, 87, 110, 143
FatI CATG 2 cut(s) 45, 85
Fnu4HI GCNGC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 184
FspI TGCGCA 1 cut(s) 84
GlaI GCGC 2 cut(s) 84, 162
GluI GCNGC 1 cut(s) 184
HaeIII GGCC 2 cut(s) 95, 178
HapII CCGG 1 cut(s) 174
HhaI GCGC 2 cut(s) 85, 163
Hin1II CATG 2 cut(s) 49, 89
Hin6I GCGC 2 cut(s) 83, 161
HinP1I GCGC 2 cut(s) 83, 161
HindIII AAGCTT 1 cut(s) 165
HpaII CCGG 1 cut(s) 174
Hpy188III TCNNGA 2 cut(s) 99, 119
HpyCH4IV ACGT 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 2 cut(s) 49, 89
HspAI GCGC 2 cut(s) 83, 161
LpnPI CCDG 3 cut(s) 172, 180, 187
MabI ACCWGGT 1 cut(s) 193
MaeII ACGT 1 cut(s) 127
MboII GAAGA 2 cut(s) 11, 49
MhlI GDGCHC 1 cut(s) 118
MluCI AATT 1 cut(s) 13
MnlI CCTC 3 cut(s) 85, 106, 114
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 44
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 175, 195
MvaI CCWGG 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 175
NlaIII CATG 2 cut(s) 49, 89
NlaIV GGNNCC 1 cut(s) 192
NsbI TGCGCA 1 cut(s) 84
NspI RCATGY 1 cut(s) 89
PaeR7I CTCGAG 1 cut(s) 97
PceI AGGCCT 1 cut(s) 95
PflFI GACNNNGTC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 185
PpuMI RGGWCCY 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 2 cut(s) 176, 191
PspPPI RGGWCCY 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 195
RsaI GTAC 1 cut(s) 130
RsaNI GTAC 1 cut(s) 129
RseI CAYNNNNRTG 1 cut(s) 44
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 1 cut(s) 184
Sau96I GGNCC 2 cut(s) 176, 191
ScrFI CCNGG 2 cut(s) 175, 195
SduI GDGCHC 1 cut(s) 118
SetI ASST 5 cut(s) 106, 115, 130, 169, 196
SexAI ACCWGGT 1 cut(s) 193
Sfr274I CTCGAG 1 cut(s) 97
SinI GGWCC 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 97, 117
SmoI CTYRAG 2 cut(s) 97, 117
Sse9I AATT 1 cut(s) 13
SseBI AGGCCT 1 cut(s) 95
SsiI CCGC 1 cut(s) 184
StuI AGGCCT 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 173, 193
TaiI ACGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 98
TasI AATT 1 cut(s) 13
TauI GCSGC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TspDTI ATGAA 2 cut(s) 17, 40
Tth111I GACNNNGTC 1 cut(s) 195
VpaK11BI GGWCC 1 cut(s) 191
XagI CCTNNNNNAGG 1 cut(s) 108
XapI RAATTY 1 cut(s) 13
XceI RCATGY 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.