Prupe.1G445200_v2.0.a1

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
37697608 .. 37704005
6398 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G445200.4

Sequence Viewer

Length: 1248 bp
ATGGGTCGCGTGGTCTTCTCTCACTTCCTCGCCAACTCTTCTCCACGCTTAGCAACCTCACTCAGGTGCTATGGTGGATTTCAAATCAGGCGCTGGAAAAGACCTAGTTCAAATCCTCAGCATCGGCTTCTAAGCGCCCGTAATGGCTCTGGTTTTCGGTGCTGCTGTAGCGCTTCGCTCTTGCAACCCGCTGGTCCAGAGACTTCTCCGAGCTCTGTAAAGAAGAGGATAGTGTCTGGAGTCCAGCCGACGGGTTCTATTCACCTAGGGAATTATCTTGGAGCCATAAGAAATTGGATTCTGTTGCAGAATACATATGATACTTTCTTTTTCATTGTGGACCTCCATGCGATTACATTGCCGTATGATGCACAACAATTATCCAAGGCAACAAGGGATACCGCAGCTCTTTATTTGGCATGTGGAGTGGACACCTCCAAGGCATCTGTCTTTGTGCAGTCTCATGTTCGTGCCCATGCAGAGTTGATGTGGCTTTTAAGTTCTGTCACACCTGTTGGTTGGCTTAATAGAATGATTCAGTTTAAAGAGAAATCGCGCAAGGCGGGGGATGAAAATGTTGGTGTTGGTCTGTTGACTTACCCTGTTTTGATGGCTTCTGATATTCTTTTATATCAGTCTGACTTTGTCCCAGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACACGTGAGCTAGCGGAGCGTGTTAATCACTTATTTGGTGGAAGGAAATGGAAAAAATTGGGAGGGCGAGGTGGTTCAGTTTTTAAGGTTCCTGAGCCTCTTATACCACCAGTTGGAGCACGAGTGATGTCCCTTACTGATGGTCTTTCCAAGATGTCCAAGTCTGCGCCTTCTGATCAGTCCCGGATCAATCTTCTTGACCCTAAAGATGTAATAGCAAACAAAATAAAGAGGTGCAAAACTGACTCATTTCCAGGCATGGAATTTGATAATCCTGAAAGGCCTGAGTGCAACAACCTTCTCTCAATATATCAGCTGATTTCGGGAAAGACGAAAGAGGAAGTTGCAGAAGAATGCCGAGATATGAACTGGGGCACATTTAAGTCACTCCTAGCTGATGCGCTGATTGATCATCTGCAACCCATCCAGGTTCGCTACGAGGAAATCATTTCTGACTCAGCTTATTTGGATGGAATTTTGGCAGAAGGTGCTACGAAAGCTGCAGGTATAGCTGATGCTACACTCCATAATGTCTACCAGGCAATGGGATTCTTGCGTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

416

Amino Acids

45.98

Weight (kDa)

9.16

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1178
AccB7I CCANNNNNTGG 2 cut(s) 797, 1228
AccI GTMKAC 1 cut(s) 1218
AccII CGCG 2 cut(s) 9, 556
AciI CCGC 4 cut(s) 189, 402, 563, 698
AclWI GGATC 1 cut(s) 878
AcsI RAATTY 2 cut(s) 947, 1158
AcvI CACGTG 1 cut(s) 689
AfeI AGCGCT 1 cut(s) 172
AfiI CCNNNNNNNGG 4 cut(s) 63, 250, 797, 1228
AflIII ACRYGT 1 cut(s) 686
AgsI TTSAA 2 cut(s) 83, 111
AjnI CCWGG 3 cut(s) 937, 1110, 1221
AleI CACNNNNGTG 1 cut(s) 64
AluBI AGCT 8 cut(s) 213, 407, 694, 1000, 1079, 1145, 1184, 1196
AluI AGCT 8 cut(s) 213, 407, 694, 1000, 1079, 1145, 1184, 1196
Alw21I GWGCWC 2 cut(s) 215, 805
Alw26I GTCTC 2 cut(s) 194, 465
AlwI GGATC 1 cut(s) 878
AlwNI CAGNNNCTG 1 cut(s) 93
Aor51HI AGCGCT 1 cut(s) 172
AoxI GGCC 1 cut(s) 965
ApeKI GCWGC 4 cut(s) 162, 404, 670, 1184
ApoI RAATTY 2 cut(s) 947, 1158
AspA2I CCTAGG 1 cut(s) 265
AspLEI GCGC 6 cut(s) 93, 137, 173, 558, 853, 1087
AspS9I GGNCC 2 cut(s) 194, 340
AsuC2I CCSGG 1 cut(s) 868
AsuHPI GGTGA 2 cut(s) 254, 668
AsuNHI GCTAGC 1 cut(s) 694
AvaII GGWCC 2 cut(s) 194, 340
AvrII CCTAGG 1 cut(s) 265
BaeGI GKGCMC 2 cut(s) 475, 1061
BanII GRGCYC 1 cut(s) 215
BauI CACGAG 1 cut(s) 804
BbrPI CACGTG 1 cut(s) 689
BbsI GAAGAC 1 cut(s) 7
Bbv12I GWGCWC 2 cut(s) 215, 805
BbvCI CCTCAGC 1 cut(s) 117
BbvI GCAGC 4 cut(s) 149, 416, 682, 1171
BccI CCATC 4 cut(s) 604, 818, 1115, 1148
BceAI ACGGC 1 cut(s) 346
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BciT130I CCWGG 3 cut(s) 939, 1112, 1223
BciVI GTATCC 1 cut(s) 391
BclI TGATCA 2 cut(s) 859, 1093
BcnI CCSGG 1 cut(s) 868
BcoDI GTCTC 2 cut(s) 194, 465
BfaI CTAG 4 cut(s) 105, 266, 695, 1076
BfmI CTRYAG 2 cut(s) 166, 1185
BfoI RGCGCY 3 cut(s) 94, 138, 174
BfuAI ACCTGC 1 cut(s) 1178
BfuI GTATCC 1 cut(s) 391
BisI GCNGC 4 cut(s) 163, 405, 671, 1185
BlnI CCTAGG 1 cut(s) 265
BlpI GCTNAGC 1 cut(s) 49
BlsI GCNGC 4 cut(s) 164, 406, 672, 1186
Bme1390I CCNGG 4 cut(s) 868, 939, 1112, 1223
Bme18I GGWCC 2 cut(s) 194, 340
BmgT120I GGNCC 2 cut(s) 194, 340
BmiI GGNNCC 2 cut(s) 283, 774
BmrFI CCNGG 4 cut(s) 868, 939, 1112, 1223
BmrI ACTGGG 2 cut(s) 644, 1063
BmsI GCATC 5 cut(s) 130, 358, 452, 1072, 1189
BmtI GCTAGC 1 cut(s) 698
BmuI ACTGGG 2 cut(s) 644, 1063
BpiI GAAGAC 1 cut(s) 7
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 2 cut(s) 117, 777
Bpu1102I GCTNAGC 1 cut(s) 49
BpuMI CCSGG 1 cut(s) 868
BsaAI YACGTR 1 cut(s) 689
BsaJI CCNNGG 3 cut(s) 265, 384, 438
BsaXI ACNNNNNCTCC 2 cut(s) 792, 822
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 250, 797, 1228
Bse1I ACTGG 3 cut(s) 650, 794, 1058
Bse3DI GCAATG 2 cut(s) 356, 1233
BseBI CCWGG 3 cut(s) 939, 1112, 1223
BseDI CCNNGG 3 cut(s) 265, 384, 438
BseGI GGATG 3 cut(s) 574, 1107, 1159
BseLI CCNNNNNNNGG 4 cut(s) 63, 250, 797, 1228
BseMI GCAATG 2 cut(s) 356, 1233
BseMII CTCAG 5 cut(s) 76, 131, 768, 960, 1155
BseNI ACTGG 3 cut(s) 650, 794, 1058
BseSI GKGCMC 2 cut(s) 475, 1061
BseXI GCAGC 4 cut(s) 149, 416, 682, 1171
BsgI GTGCAG 1 cut(s) 476
Bsh1236I CGCG 2 cut(s) 9, 556
BshFI GGCC 1 cut(s) 967
BsiHKAI GWGCWC 2 cut(s) 215, 805
BsiSI CCGG 1 cut(s) 868
BslFI GGGAC 3 cut(s) 632, 799, 850
BslI CCNNNNNNNGG 4 cut(s) 63, 250, 797, 1228
BsmAI GTCTC 2 cut(s) 194, 465
BsmFI GGGAC 3 cut(s) 632, 799, 850
BsmI GAATGC 1 cut(s) 1043
BsnI GGCC 1 cut(s) 967
Bsp1286I GDGCHC 4 cut(s) 215, 475, 805, 1061
Bsp143I GATC 4 cut(s) 661, 859, 870, 1093
Bsp1720I GCTNAGC 1 cut(s) 49
BspACI CCGC 4 cut(s) 189, 402, 563, 698
BspANI GGCC 1 cut(s) 967
BspCNI CTCAG 5 cut(s) 75, 130, 769, 961, 1154
BspFNI CGCG 2 cut(s) 9, 556
BspLI GGNNCC 2 cut(s) 283, 774
BspMAI CTGCAG 1 cut(s) 1189
BspMI ACCTGC 1 cut(s) 1178
BspOI GCTAGC 1 cut(s) 698
BspPI GGATC 1 cut(s) 878
BsrDI GCAATG 2 cut(s) 356, 1233
BsrI ACTGG 3 cut(s) 650, 794, 1058
BssECI CCNNGG 3 cut(s) 265, 384, 438
BssMI GATC 4 cut(s) 661, 859, 870, 1093
BssSI CACGAG 1 cut(s) 804
BssT1I CCWWGG 3 cut(s) 265, 384, 438
Bst2BI CACGAG 1 cut(s) 804
Bst2UI CCWGG 3 cut(s) 939, 1112, 1223
Bst6I CTCTTC 2 cut(s) 43, 218
BstAPI GCANNNNNTGC 1 cut(s) 1172
BstBAI YACGTR 1 cut(s) 689
BstC8I GCNNGC 1 cut(s) 696
BstDEI CTNAG 7 cut(s) 49, 62, 117, 131, 777, 969, 1141
BstENI CCTNNNNNAGG 1 cut(s) 61
BstF5I GGATG 3 cut(s) 574, 1107, 1159
BstFNI CGCG 2 cut(s) 9, 556
BstH2I RGCGCY 3 cut(s) 94, 138, 174
BstHHI GCGC 6 cut(s) 93, 137, 173, 558, 853, 1087
BstKTI GATC 4 cut(s) 664, 862, 873, 1096
BstMAI GTCTC 2 cut(s) 194, 465
BstMBI GATC 4 cut(s) 661, 859, 870, 1093
BstMWI GCNNNNNNNGC 5 cut(s) 168, 700, 1172, 1181, 1193
BstNI CCWGG 3 cut(s) 939, 1112, 1223
BstNSI RCATGY 1 cut(s) 423
BstSCI CCNGG 4 cut(s) 866, 937, 1110, 1221
BstSFI CTRYAG 2 cut(s) 166, 1185
BstSLI GKGCMC 2 cut(s) 475, 1061
BstUI CGCG 2 cut(s) 9, 556
BstV1I GCAGC 4 cut(s) 149, 416, 682, 1171
BstV2I GAAGAC 1 cut(s) 7
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 1 cut(s) 967
BtsCI GGATG 3 cut(s) 574, 1107, 1159
BveI ACCTGC 1 cut(s) 1178
Cac8I GCNNGC 1 cut(s) 696
CaiI CAGNNNCTG 1 cut(s) 93
CfoI GCGC 6 cut(s) 93, 137, 173, 558, 853, 1087
Cfr13I GGNCC 2 cut(s) 194, 340
CviAII CATG 5 cut(s) 347, 420, 464, 476, 943
DdeI CTNAG 7 cut(s) 49, 62, 117, 131, 777, 969, 1141
DpnI GATC 4 cut(s) 663, 861, 872, 1095
DpnII GATC 4 cut(s) 661, 859, 870, 1093
DraI TTTAAA 1 cut(s) 544
Eam1104I CTCTTC 2 cut(s) 43, 218
EarI CTCTTC 2 cut(s) 43, 218
Ecl136II GAGCTC 1 cut(s) 213
Eco130I CCWWGG 3 cut(s) 265, 384, 438
Eco147I AGGCCT 1 cut(s) 967
Eco24I GRGCYC 1 cut(s) 215
Eco47I GGWCC 2 cut(s) 194, 340
Eco47III AGCGCT 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 213
Eco72I CACGTG 1 cut(s) 689
EcoICRI GAGCTC 1 cut(s) 213
EcoNI CCTNNNNNAGG 1 cut(s) 61
EcoRII CCWGG 3 cut(s) 937, 1110, 1221
EcoT14I CCWWGG 3 cut(s) 265, 384, 438
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 3 cut(s) 265, 384, 438
FaeI CATG 5 cut(s) 350, 423, 467, 479, 946
FaqI GGGAC 3 cut(s) 632, 799, 850
FatI CATG 5 cut(s) 346, 419, 463, 475, 942
FauI CCCGC 2 cut(s) 196, 556
FauNDI CATATG 1 cut(s) 316
FbaI TGATCA 2 cut(s) 859, 1093
FblI GTMKAC 1 cut(s) 1218
Fnu4HI GCNGC 4 cut(s) 163, 405, 671, 1185
FokI GGATG 3 cut(s) 581, 1094, 1166
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 4 cut(s) 163, 405, 671, 1185
FspBI CTAG 4 cut(s) 105, 266, 695, 1076
GlaI GCGC 6 cut(s) 92, 136, 172, 557, 852, 1086
GluI GCNGC 4 cut(s) 163, 405, 671, 1185
GsuI CTGGAG 1 cut(s) 258
HaeII RGCGCY 3 cut(s) 94, 138, 174
HaeIII GGCC 1 cut(s) 967
HapII CCGG 1 cut(s) 868
HhaI GCGC 6 cut(s) 93, 137, 173, 558, 853, 1087
Hin1II CATG 5 cut(s) 350, 423, 467, 479, 946
Hin6I GCGC 6 cut(s) 91, 135, 171, 556, 851, 1085
HinP1I GCGC 6 cut(s) 91, 135, 171, 556, 851, 1085
HincII GTYRAC 2 cut(s) 594, 684
HindII GTYRAC 2 cut(s) 594, 684
HinfI GANTC 6 cut(s) 240, 298, 535, 929, 1139, 1233
HpaII CCGG 1 cut(s) 868
HphI GGTGA 2 cut(s) 254, 668
Hpy166II GTNNAC 5 cut(s) 340, 430, 594, 684, 1219
Hpy188I TCNGA 5 cut(s) 210, 619, 640, 859, 1138
Hpy188III TCNNGA 6 cut(s) 197, 237, 776, 881, 959, 1008
Hpy8I GTNNAC 5 cut(s) 340, 430, 594, 684, 1219
Hpy99I CGWCG 1 cut(s) 253
HpyAV CCTTC 4 cut(s) 720, 864, 992, 1163
HpyCH4IV ACGT 1 cut(s) 688
HpyF10VI GCNNNNNNNGC 5 cut(s) 168, 700, 1172, 1181, 1193
HpyF3I CTNAG 7 cut(s) 49, 62, 117, 131, 777, 969, 1141
HpySE526I ACGT 1 cut(s) 688
Hsp92II CATG 5 cut(s) 350, 423, 467, 479, 946
HspAI GCGC 6 cut(s) 91, 135, 171, 556, 851, 1085
Ksp22I TGATCA 2 cut(s) 859, 1093
Kzo9I GATC 4 cut(s) 661, 859, 870, 1093
LmnI GCTCC 3 cut(s) 281, 700, 800
Lsp1109I GCAGC 4 cut(s) 149, 416, 682, 1171
LweI GCATC 5 cut(s) 130, 358, 452, 1072, 1189
MaeI CTAG 4 cut(s) 105, 266, 695, 1076
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 2 cut(s) 505, 1068
MalI GATC 4 cut(s) 663, 861, 872, 1095
MboI GATC 4 cut(s) 661, 859, 870, 1093
MboII GAAGA 6 cut(s) 7, 30, 235, 671, 869, 1046
MhlI GDGCHC 4 cut(s) 215, 475, 805, 1061
MluCI AATT 6 cut(s) 271, 292, 377, 740, 947, 1158
MlyI GAGTC 3 cut(s) 249, 923, 1133
MmeI TCCRAC 1 cut(s) 778
MseI TTAA 6 cut(s) 497, 525, 543, 708, 768, 1065
MslI CAYNNNNRTG 2 cut(s) 64, 468
MspA1I CMGCKG 2 cut(s) 191, 1000
MspI CCGG 1 cut(s) 868
MspR9I CCNGG 4 cut(s) 868, 939, 1112, 1223
Mva1269I GAATGC 1 cut(s) 1043
MvaI CCWGG 3 cut(s) 939, 1112, 1223
MvnI CGCG 2 cut(s) 9, 556
MwoI GCNNNNNNNGC 5 cut(s) 168, 700, 1172, 1181, 1193
NciI CCSGG 1 cut(s) 868
NdeI CATATG 1 cut(s) 316
NdeII GATC 4 cut(s) 661, 859, 870, 1093
NheI GCTAGC 1 cut(s) 694
NlaIII CATG 5 cut(s) 350, 423, 467, 479, 946
NlaIV GGNNCC 2 cut(s) 283, 774
NmeAIII GCCGAG 1 cut(s) 1067
NmuCI GTSAC 2 cut(s) 505, 1068
NspI RCATGY 1 cut(s) 423
OliI CACNNNNGTG 1 cut(s) 64
PceI AGGCCT 1 cut(s) 967
PcsI WCGNNNNNNNCGW 1 cut(s) 1013
PctI GAATGC 1 cut(s) 1043
PfeI GAWTC 3 cut(s) 298, 535, 1233
PflFI GACNNNGTC 1 cut(s) 644
PflMI CCANNNNNTGG 2 cut(s) 797, 1228
PfoI TCCNGGA 1 cut(s) 866
PkrI GCNGC 4 cut(s) 164, 406, 672, 1186
PleI GAGTC 3 cut(s) 248, 923, 1133
PmaCI CACGTG 1 cut(s) 689
PmlI CACGTG 1 cut(s) 689
PpsI GAGTC 3 cut(s) 248, 923, 1133
Ppu21I YACGTR 1 cut(s) 689
Psp124BI GAGCTC 1 cut(s) 215
Psp6I CCWGG 3 cut(s) 937, 1110, 1221
PspCI CACGTG 1 cut(s) 689
PspGI CCWGG 3 cut(s) 937, 1110, 1221
PspN4I GGNNCC 2 cut(s) 283, 774
PspPI GGNCC 2 cut(s) 194, 340
PstI CTGCAG 1 cut(s) 1189
PstNI CAGNNNCTG 1 cut(s) 93
PsyI GACNNNGTC 1 cut(s) 644
PvuII CAGCTG 1 cut(s) 1000
RseI CAYNNNNRTG 2 cut(s) 64, 468
SacI GAGCTC 1 cut(s) 215
SaqAI TTAA 6 cut(s) 497, 525, 543, 708, 768, 1065
SatI GCNGC 4 cut(s) 163, 405, 671, 1185
Sau3AI GATC 4 cut(s) 661, 859, 870, 1093
Sau96I GGNCC 2 cut(s) 194, 340
SchI GAGTC 3 cut(s) 249, 923, 1133
ScrFI CCNGG 4 cut(s) 868, 939, 1112, 1223
SduI GDGCHC 4 cut(s) 215, 475, 805, 1061
SfaNI GCATC 5 cut(s) 130, 358, 452, 1072, 1189
SfcI CTRYAG 2 cut(s) 166, 1185
SinI GGWCC 2 cut(s) 194, 340
SmiMI CAYNNNNRTG 2 cut(s) 64, 468
Sse9I AATT 6 cut(s) 271, 292, 377, 740, 947, 1158
SseBI AGGCCT 1 cut(s) 967
SsiI CCGC 4 cut(s) 189, 402, 563, 698
SspMI CTAG 4 cut(s) 105, 266, 695, 1076
SstI GAGCTC 1 cut(s) 215
StuI AGGCCT 1 cut(s) 967
StyD4I CCNGG 4 cut(s) 866, 937, 1110, 1221
StyI CCWWGG 3 cut(s) 265, 384, 438
TaiI ACGT 1 cut(s) 691
TasI AATT 6 cut(s) 271, 292, 377, 740, 947, 1158
TfiI GAWTC 3 cut(s) 298, 535, 1233
Tru1I TTAA 6 cut(s) 497, 525, 543, 708, 768, 1065
Tru9I TTAA 6 cut(s) 497, 525, 543, 708, 768, 1065
TseFI GTSAC 2 cut(s) 505, 1068
TseI GCWGC 4 cut(s) 162, 404, 670, 1184
Tsp45I GTSAC 2 cut(s) 505, 1068
TspDTI ATGAA 3 cut(s) 322, 585, 1064
Tth111I GACNNNGTC 1 cut(s) 644
Van91I CCANNNNNTGG 2 cut(s) 797, 1228
VpaK11BI GGWCC 2 cut(s) 194, 340
XagI CCTNNNNNAGG 1 cut(s) 61
XapI RAATTY 2 cut(s) 947, 1158
XceI RCATGY 1 cut(s) 423
XmaJI CCTAGG 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 1218
XspI CTAG 4 cut(s) 105, 266, 695, 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.