Prupe.1G450400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
37956484 .. 37956840
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G450400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 357 bp
ATGGAACCCAATCTAGACCTTATCATACTTGCTCTTCTCCACGGCTCATTCATCGCCGGCTTTCTTTTTCTTGTTACCTCTGTCATGTTGACGGCTCTCTTGCTTGCATTCTCCCTCGGTCTCGTATCAATTCTCATAAATGATTTGTGCTACATTTCCTTGCTTTTTTCTTTCTACTTTGAAACAATTCTGAAGCATAATCTTGAACTGGGTTTTGTTCTAATTGTCTTCAAACTATTGCATCATGCCGTTCGCATCATCTTGGCTTTAAAGCCTTTCCTTGAACGTAAGATTTCCCAGCTCAAAGCAAAAGCAAGACATGTGATGAATCTCATTGATGGCCTGAGACTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.33

Weight (kDa)

9.3

Isoelectric Point (pI)

21.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021143)

Species Orthologous Gene IDs
malus_domestica MD08G1115700.v1.1 MD15G1095500.v1.1
prunus_persica Prupe.1G450400_v2.0.a1
rosa_samantha Rh6AG457800 Rh6BG443000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 212
AflIII ACRYGT 1 cut(s) 319
AgsI TTSAA 4 cut(s) 182, 206, 232, 284
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw26I GTCTC 2 cut(s) 125, 340
AoxI GGCC 1 cut(s) 340
Asp700I GAANNNNTTC 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 220
BccI CCATC 1 cut(s) 332
BceAI ACGGC 3 cut(s) 58, 108, 233
BcoDI GTCTC 2 cut(s) 125, 340
BfaI CTAG 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 2 cut(s) 250, 264
BmuI ACTGGG 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 40, 115
Bse118I RCCGGY 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 40, 115
BseMII CTCAG 1 cut(s) 335
BseNI ACTGG 1 cut(s) 213
BseYI CCCAGC 1 cut(s) 297
BshFI GGCC 1 cut(s) 342
BsiSI CCGG 1 cut(s) 57
BsmAI GTCTC 2 cut(s) 125, 340
BsmI GAATGC 1 cut(s) 107
BsnI GGCC 1 cut(s) 342
Bso31I GGTCTC 1 cut(s) 125
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 6
BspQI GCTCTTC 1 cut(s) 39
BspTNI GGTCTC 1 cut(s) 125
BsrFI RCCGGY 1 cut(s) 56
BsrI ACTGG 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 40, 115
Bst6I CTCTTC 1 cut(s) 39
BstC8I GCNNGC 2 cut(s) 58, 105
BstDEI CTNAG 1 cut(s) 344
BstDSI CCRYGG 1 cut(s) 40
BstMAI GTCTC 2 cut(s) 125, 340
BstNSI RCATGY 1 cut(s) 323
BstV2I GAAGAC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 342
BtgI CCRYGG 1 cut(s) 40
BtgZI GCGATG 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 58, 105
Cfr10I RCCGGY 1 cut(s) 56
CviAII CATG 3 cut(s) 85, 245, 320
CviJI RGCY 7 cut(s) 45, 60, 95, 266, 274, 301, 342
CviKI_1 RGCY 7 cut(s) 45, 60, 95, 266, 274, 301, 342
DdeI CTNAG 1 cut(s) 344
DraI TTTAAA 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 125
Eco57I CTGAAG 1 cut(s) 212
FaeI CATG 3 cut(s) 88, 248, 323
FaiI YATR 6 cut(s) 26, 86, 137, 198, 246, 321
FatI CATG 3 cut(s) 84, 244, 319
FspBI CTAG 1 cut(s) 14
GsaI CCCAGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 342
HapII CCGG 1 cut(s) 57
Hin1II CATG 3 cut(s) 88, 248, 323
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 1 cut(s) 328
HpaII CCGG 1 cut(s) 57
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 1 cut(s) 192
Hpy188III TCNNGA 2 cut(s) 14, 203
Hpy8I GTNNAC 1 cut(s) 90
HpyCH4IV ACGT 1 cut(s) 286
HpyCH4V TGCA 2 cut(s) 107, 241
HpyF3I CTNAG 1 cut(s) 344
HpySE526I ACGT 1 cut(s) 286
Hsp92II CATG 3 cut(s) 88, 248, 323
KroI GCCGGC 1 cut(s) 56
KroNI GCCGGC 1 cut(s) 58
LguI GCTCTTC 1 cut(s) 39
LpnPI CCDG 3 cut(s) 70, 194, 311
LweI GCATC 2 cut(s) 250, 264
MaeI CTAG 1 cut(s) 14
MaeII ACGT 1 cut(s) 286
MaeIII GTNAC 1 cut(s) 73
MboII GAAGA 2 cut(s) 26, 220
MluCI AATT 3 cut(s) 129, 186, 222
MnlI CCTC 2 cut(s) 88, 125
MroNI GCCGGC 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 2 cut(s) 269, 355
MspI CCGG 1 cut(s) 57
Mva1269I GAATGC 1 cut(s) 107
NaeI GCCGGC 1 cut(s) 58
NgoMIV GCCGGC 1 cut(s) 56
NlaIII CATG 3 cut(s) 88, 248, 323
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 323
PciI ACATGT 1 cut(s) 319
PciSI GCTCTTC 1 cut(s) 39
PctI GAATGC 1 cut(s) 107
PdiI GCCGGC 1 cut(s) 58
PdmI GAANNNNTTC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 328
PscI ACATGT 1 cut(s) 319
PspFI CCCAGC 1 cut(s) 297
PspN4I GGNNCC 1 cut(s) 6
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 2 cut(s) 269, 355
SetI ASST 4 cut(s) 21, 80, 289, 303
SfaNI GCATC 2 cut(s) 250, 264
Sse9I AATT 3 cut(s) 129, 186, 222
SspMI CTAG 1 cut(s) 14
TaiI ACGT 1 cut(s) 289
TaqII GACCGA 1 cut(s) 107
TasI AATT 3 cut(s) 129, 186, 222
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 2 cut(s) 269, 355
Tru9I TTAA 2 cut(s) 269, 355
TspDTI ATGAA 2 cut(s) 40, 341
XbaI TCTAGA 1 cut(s) 13
XceI RCATGY 1 cut(s) 323
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.