Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0016771

Physical Location & Seq

Genomic Coordinates Reverse (-)

38083087 .. 38085733

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G453000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGCATTCGTTTGCAGAGTTTTGTCAGCAGCGAAGAGGAGTTTAAAACCCAAGTCTTTGGCAATTTCTAGTAGCTCTCAGCGATGGTTGAGTAACCAAACAAGTTTGCTTCAGAGGTTGGTTGAGGAACCCAATTCACGCATCAAAAGCATACTTGGTTCCGAGGAATTCTCTGCCCTCCAAAGCTCTGATTTTTCCTGGGAAACCCTCCTCACTTCTCTCGCGTCTTCTTCCTCTCCTGATAAATCTCGCTTGGTTTTGGAGTGGAAATTGGAGAACTTGCTTGAGGAGAATGAGAAAGATCATGATCGGTACTCTGAGCTGATATCTCTGTGTGGGAAAATTCAGAATCTCCCACTTGCAATGCAAGTCTTTACTTCTATGGGGGCTAATGGAATCAAACCCACTTCTGCTATTTTCAATTCCCTTGTGCATGCCTGCTTCTCTTCAGGTAATGTGTTGACAACTTTCAGCCTGTTTGAGATAATGGAGAGCTCAGAGGGATTTAAACCCAATTCTGACACTTATGATGCGTTCATGTCTGCATTCTCAAAGTTGGGCAAAGCTGATTCTGTGCAAGCTTGGTACTCTGCCAAGAAGGCTGCTGGATTCAGTTCTGATGTTCAAACCTATCAAACTCTGATTTCCGGTTGCATCAAATCGAACAATTTCAAGTTGGCTGATTGGTTCTATGAAGAAATGGTATTATCAGGGCTCATGCCCAACTTGCCCATATTGGAGAATATGCTGGAAGGGCTTTGTAAGAGGAGGAGCTTTGATCAAGTTAAAGAGTTTATGAAGATAGTGTTGGATGCTGGGTGGAAGATCAATGAGAAGATGGCTGAGATGGTTGTGGGGTTGTATATTGAACTTAGGATGGTGGAGAAATTGGAGGAGCTACTTGTAGATTTAATGGAGACCAATCAAGTCTCAGAAGTTTTGTTGCTGGTCCACTGTGGGATTATAAGGTTGAATGCCATGTTGGATAGATTGGATGATGTAGAGTACTCTGTGGGGAGGATGCTGAAACAAGGAGTGTCATTTAAACATCATGACGTTGTTGAAAAGGTAATCTGCTCGTACTTCAGGTGCTCGGCTCATGATAGGCTGGAGCTGTTTTTGGAACGTCTGAAGGGTTCTTATGAACTTACAAAATCAACTTATGATCTGTTGATTGCTGGCTATCGAAGAGCCGGGTTATCTGACAGGTTGAATGATATGAAATGTGTTGGGTTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

414

Amino Acids

46.61

Weight (kDa)

5.84

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016771)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g36160
malus_domestica	MD08G1118800.v1.1
prunus_persica	Prupe.1G453000_v2.0.a1
pyrus_communis	pycom08g09920
rosa_chinensis	RchiOBHm_Chr6g0305711
rosa_laevigata	RLG00000010866
rosa_multiflora	Rmu_sc0001809.1_g000036
rosa_roxburghii	Rroxscaffold_7G00162420
rosa_rugosa	Rorug06G0343400
rosa_samantha	Rh6AG454900 Rh6BG446600 Rh6CG468800 Rh6DG455400
rosa_wichuraiana	Rw6G039670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	965
AccII	CGCG	1 cut(s)	224
AcsI	RAATTY	2 cut(s)	167, 342
AcuI	CTGAAG	4 cut(s)	95, 432, 1069, 1151
AfaI	GTAC	4 cut(s)	314, 587, 1007, 1082
AgsI	TTSAA	7 cut(s)	421, 626, 673, 869, 973, 1064, 1213
AjnI	CCWGG	1 cut(s)	197
AjuI	GAANNNNNNNTTGG	4 cut(s)	791, 823, 965, 997
AluBI	AGCT	9 cut(s)	75, 186, 322, 495, 566, 581, 774, 898, 1114
AluI	AGCT	9 cut(s)	75, 186, 322, 495, 566, 581, 774, 898, 1114
Alw21I	GWGCWC	2 cut(s)	497, 1094
Alw26I	GTCTC	2 cut(s)	911, 934
ApeKI	GCWGC	2 cut(s)	29, 602
ApoI	RAATTY	2 cut(s)	167, 342
Asp700I	GAANNNNTTC	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	949
AsuC2I	CCSGG	1 cut(s)	1195
AvaII	GGWCC	1 cut(s)	949
BanII	GRGCYC	2 cut(s)	497, 717
BbsI	GAAGAC	1 cut(s)	219
Bbv12I	GWGCWC	2 cut(s)	497, 1094
BbvI	GCAGC	2 cut(s)	41, 589
BccI	CCATC	4 cut(s)	78, 832, 841, 871
BciT130I	CCWGG	1 cut(s)	199
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	1 cut(s)	1195
BcoDI	GTCTC	2 cut(s)	911, 934
BfaI	CTAG	1 cut(s)	69
BglI	GCCNNNNNGGC	1 cut(s)	599
BisI	GCNGC	2 cut(s)	30, 603
BlsI	GCNGC	2 cut(s)	31, 604
BmcAI	AGTACT	1 cut(s)	1007
Bme1390I	CCNGG	2 cut(s)	199, 1195
Bme18I	GGWCC	1 cut(s)	949
BmgT120I	GGNCC	1 cut(s)	949
BmiI	GGNNCC	2 cut(s)	129, 160
BmrFI	CCNGG	2 cut(s)	199, 1195
BmsI	GCATC	5 cut(s)	150, 520, 663, 802, 1011
BpiI	GAAGAC	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpmI	CTGGAG	1 cut(s)	1130
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	1 cut(s)	1195
BsaBI	GATNNNNATC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	911
BsaJI	CCNNGG	2 cut(s)	162, 198
BsaWI	WCCGGW	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	369
Bse8I	GATNNNNATC	1 cut(s)	306
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	162, 198
BseGI	GGATG	4 cut(s)	817, 882, 1000, 1026
BseJI	GATNNNNATC	1 cut(s)	306
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	5 cut(s)	92, 309, 510, 834, 945
BseRI	GAGGAG	6 cut(s)	52, 200, 302, 781, 784, 908
BseXI	GCAGC	2 cut(s)	41, 589
BseYI	CCCAGC	1 cut(s)	815
Bsh1236I	CGCG	1 cut(s)	224
BsiHKAI	GWGCWC	2 cut(s)	497, 1094
BsiSI	CCGG	2 cut(s)	648, 1194
BsmAI	GTCTC	2 cut(s)	911, 934
BsmI	GAATGC	3 cut(s)	5, 545, 979
Bso31I	GGTCTC	1 cut(s)	911
Bsp1286I	GDGCHC	3 cut(s)	497, 717, 1094
Bsp143I	GATC	5 cut(s)	301, 307, 778, 825, 1165
BspCNI	CTCAG	5 cut(s)	91, 310, 509, 835, 944
BspFNI	CGCG	1 cut(s)	224
BspHI	TCATGA	3 cut(s)	304, 1051, 1099
BspLI	GGNNCC	2 cut(s)	129, 160
BspQI	GCTCTTC	1 cut(s)	1183
BspTNI	GGTCTC	1 cut(s)	911
BsrDI	GCAATG	1 cut(s)	369
BssECI	CCNNGG	2 cut(s)	162, 198
BssMI	GATC	5 cut(s)	301, 307, 778, 825, 1165
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	956
Bst6I	CTCTTC	3 cut(s)	29, 451, 1183
BstC8I	GCNNGC	4 cut(s)	435, 439, 579, 1180
BstDEI	CTNAG	6 cut(s)	78, 318, 496, 843, 872, 931
BstF5I	GGATG	4 cut(s)	817, 882, 1000, 1026
BstFNI	CGCG	1 cut(s)	224
BstKTI	GATC	5 cut(s)	304, 310, 781, 828, 1168
BstMAI	GTCTC	2 cut(s)	911, 934
BstMBI	GATC	5 cut(s)	301, 307, 778, 825, 1165
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 599, 727, 754
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	437
BstSCI	CCNGG	2 cut(s)	197, 1193
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	2 cut(s)	41, 589
BstV2I	GAAGAC	1 cut(s)	219
BstXI	CCANNNNNNTGG	1 cut(s)	58
BtgZI	GCGATG	1 cut(s)	97
BtsCI	GGATG	4 cut(s)	817, 882, 1000, 1026
BtsIMutI	CAGTG	1 cut(s)	952
Cac8I	GCNNGC	4 cut(s)	435, 439, 579, 1180
CciI	TCATGA	3 cut(s)	304, 1051, 1099
Cfr13I	GGNCC	1 cut(s)	949
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	4 cut(s)	313, 586, 1006, 1081
CviAII	CATG	7 cut(s)	305, 434, 538, 718, 979, 1052, 1100
CviQI	GTAC	4 cut(s)	313, 586, 1006, 1081
DdeI	CTNAG	6 cut(s)	78, 318, 496, 843, 872, 931
DpnI	GATC	5 cut(s)	303, 309, 780, 827, 1167
DpnII	GATC	5 cut(s)	301, 307, 778, 825, 1165
DraI	TTTAAA	3 cut(s)	45, 508, 1045
Eam1104I	CTCTTC	3 cut(s)	29, 451, 1183
EarI	CTCTTC	3 cut(s)	29, 451, 1183
Ecl136II	GAGCTC	1 cut(s)	495
Eco24I	GRGCYC	2 cut(s)	497, 717
Eco31I	GGTCTC	1 cut(s)	911
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	1 cut(s)	949
Eco53kI	GAGCTC	1 cut(s)	495
Eco57I	CTGAAG	4 cut(s)	95, 432, 1069, 1151
EcoICRI	GAGCTC	1 cut(s)	495
EcoRI	GAATTC	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	197
EcoRV	GATATC	1 cut(s)	327
EcoT38I	GRGCYC	2 cut(s)	497, 717
FaeI	CATG	7 cut(s)	308, 437, 541, 721, 982, 1055, 1103
FatI	CATG	7 cut(s)	304, 433, 537, 717, 978, 1051, 1099
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	2 cut(s)	30, 603
FokI	GGATG	4 cut(s)	824, 889, 1007, 1033
FriOI	GRGCYC	2 cut(s)	497, 717
Fsp4HI	GCNGC	2 cut(s)	30, 603
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	2 cut(s)	30, 603
GsaI	CCCAGC	1 cut(s)	819
GsuI	CTGGAG	1 cut(s)	1130
HapII	CCGG	2 cut(s)	648, 1194
HgaI	GACGC	1 cut(s)	213
Hin1II	CATG	7 cut(s)	308, 437, 541, 721, 982, 1055, 1103
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	4 cut(s)	349, 396, 569, 609
HpaII	CCGG	2 cut(s)	648, 1194
Hpy166II	GTNNAC	2 cut(s)	462, 952
Hpy188III	TCNNGA	4 cut(s)	239, 305, 1052, 1100
Hpy8I	GTNNAC	2 cut(s)	462, 952
HpyAV	CCTTC	3 cut(s)	592, 746, 1126
HpyCH4III	ACNGT	1 cut(s)	956
HpyCH4IV	ACGT	2 cut(s)	1056, 1126
HpyCH4V	TGCA	7 cut(s)	15, 362, 367, 433, 545, 577, 654
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 599, 727, 754
HpyF3I	CTNAG	6 cut(s)	78, 318, 496, 843, 872, 931
HpySE526I	ACGT	2 cut(s)	1056, 1126
Hsp92II	CATG	7 cut(s)	308, 437, 541, 721, 982, 1055, 1103
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	5 cut(s)	301, 307, 778, 825, 1165
LguI	GCTCTTC	1 cut(s)	1183
LmnI	GCTCC	3 cut(s)	771, 895, 1111
Lsp1109I	GCAGC	2 cut(s)	41, 589
LweI	GCATC	5 cut(s)	150, 520, 663, 802, 1011
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	2 cut(s)	1056, 1126
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	5 cut(s)	303, 309, 780, 827, 1167
MboI	GATC	5 cut(s)	301, 307, 778, 825, 1165
MboII	GAAGA	9 cut(s)	46, 219, 222, 438, 707, 811, 835, 847, 1200
MhlI	GDGCHC	3 cut(s)	497, 717, 1094
MluCI	AATT	9 cut(s)	63, 133, 167, 269, 342, 421, 514, 667, 887
MmeI	TCCRAC	2 cut(s)	789, 963
MroXI	GAANNNNTTC	1 cut(s)	668
MseI	TTAA	5 cut(s)	44, 507, 786, 911, 1044
MspI	CCGG	2 cut(s)	648, 1194
MspR9I	CCNGG	2 cut(s)	199, 1195
Mva1269I	GAATGC	3 cut(s)	5, 545, 979
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	4 cut(s)	147, 599, 727, 754
NciI	CCSGG	1 cut(s)	1195
NdeII	GATC	5 cut(s)	301, 307, 778, 825, 1165
NlaIII	CATG	7 cut(s)	308, 437, 541, 721, 982, 1055, 1103
NlaIV	GGNNCC	2 cut(s)	129, 160
NmeAIII	GCCGAG	1 cut(s)	1073
NspI	RCATGY	1 cut(s)	437
PaeI	GCATGC	1 cut(s)	437
PagI	TCATGA	3 cut(s)	304, 1051, 1099
PciSI	GCTCTTC	1 cut(s)	1183
PctI	GAATGC	3 cut(s)	5, 545, 979
PdmI	GAANNNNTTC	1 cut(s)	668
PfeI	GAWTC	4 cut(s)	349, 396, 569, 609
PkrI	GCNGC	2 cut(s)	31, 604
PsiI	TTATAA	1 cut(s)	965
Psp124BI	GAGCTC	1 cut(s)	497
Psp6I	CCWGG	1 cut(s)	197
PspFI	CCCAGC	1 cut(s)	815
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	2 cut(s)	129, 160
PspPI	GGNCC	1 cut(s)	949
RsaI	GTAC	4 cut(s)	314, 587, 1007, 1082
RsaNI	GTAC	4 cut(s)	313, 586, 1006, 1081
SacI	GAGCTC	1 cut(s)	497
SapI	GCTCTTC	1 cut(s)	1183
SaqAI	TTAA	5 cut(s)	44, 507, 786, 911, 1044
SatI	GCNGC	2 cut(s)	30, 603
Sau3AI	GATC	5 cut(s)	301, 307, 778, 825, 1165
Sau96I	GGNCC	1 cut(s)	949
ScaI	AGTACT	1 cut(s)	1007
ScrFI	CCNGG	2 cut(s)	199, 1195
SduI	GDGCHC	3 cut(s)	497, 717, 1094
SfaNI	GCATC	5 cut(s)	150, 520, 663, 802, 1011
SinI	GGWCC	1 cut(s)	949
SmlI	CTYRAG	1 cut(s)	284
SmoI	CTYRAG	1 cut(s)	284
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	9 cut(s)	63, 133, 167, 269, 342, 421, 514, 667, 887
SspMI	CTAG	1 cut(s)	69
SstI	GAGCTC	1 cut(s)	497
StyD4I	CCNGG	2 cut(s)	197, 1193
TaaI	ACNGT	1 cut(s)	956
TaiI	ACGT	2 cut(s)	1059, 1129
TaqI	TCGA	2 cut(s)	662, 1186
TasI	AATT	9 cut(s)	63, 133, 167, 269, 342, 421, 514, 667, 887
TatI	WGTACW	1 cut(s)	1005
TfiI	GAWTC	4 cut(s)	349, 396, 569, 609
Tru1I	TTAA	5 cut(s)	44, 507, 786, 911, 1044
Tru9I	TTAA	5 cut(s)	44, 507, 786, 911, 1044
TscAI	CASTG	1 cut(s)	959
TseI	GCWGC	2 cut(s)	29, 602
TspDTI	ATGAA	5 cut(s)	526, 708, 812, 1158, 1235
TspRI	CASTG	1 cut(s)	959
VpaK11BI	GGWCC	1 cut(s)	949
XapI	RAATTY	2 cut(s)	167, 342
XceI	RCATGY	1 cut(s)	437
XmnI	GAANNNNTTC	1 cut(s)	668
XspI	CTAG	1 cut(s)	69
ZrmI	AGTACT	1 cut(s)	1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.