RchiOBHm_Chr6g0305711

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0016771
Physical Location & Seq
Forward (+)
64637523 .. 64639616
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27475

Sequence Viewer

Length: 1236 bp
ATGGCATCAGTCTTAAGAGTTCTATCAGCGACGAGAAGAGTTTTAGAAATTCCGAGTAGCTCTCAGTCTCAGCGTTGTTGGCTAAGTAACCAAGCGTGCTTGCTTCGGAGGTTGATGGAGGAACCCAAATCGCGAATCAAAACCCTTCTTGCTTCTGCGGCGGAGAAAGACTCTGCCTCTGATTTTTCTTGGGAATCACTCGTTAGTTCTCTCGCTTCTTCTTCCTCTCCTGACAAAACCCACTTGGTTCTGGAATGGAAATTGGAGAAGTTGCTAAAGGAGAATGAGAGAGATCATGATCGTTACTGTGAGCTGATATCTCTATGTGGAAAAGTTCGGAATCTTCCACTTGCAATGCAAGTCTTTTCTTCTATGGAGGCTAATGGAGTTCAACCCACTTCTGCAGTTTTCAATTCCCTTATTCATGTTTGCTTCTCTTCCGGGAATTTGTTCACTGCTATCAGCTTGTTTGAGATTATGGAGAGCTCAGAGGGATTTAAACCTGATTCCGACACTTACGATGCATTCATGTCTGCTTTCTTAAAGTCGGGCAAAACTGATTTGATGCAAGCTTGGTACTCTGCCAAGAAAGCTGCTGGCTTTGATTCTGATATTCAAACCTATCAGTCTCTGATTTCGGGTTGTATCAAATTGAAAAAGTATGAGCTTGCTGATATGTTCTACAAAGAAATGGTATTATCGGGAATCTGGCCCAACTTACCCATATTGGAGTATATGCTGGAAGGGCTTTGCAAGAGGAGAAGCTCTGGCCAAGTCAAAGAATTTTTGGCGATGGTGTGTGGTTATGGGTGGAAGATGAGTGAAAAAATGGCTGAGATGGTTGTGGGGTTGCATATCGAACTTGGGAAGGTGGAGCGATTGGAGGAGCTACTCGAGACTTTAATGGAGAGTGATCAGACTTCGGAAGTTTTGTTGCCGGTCCACTATGGGATTATAAGGATGTACGCCATGTTGGATAGATTAGATGATGTAGAGTACTCTGTGGGTAGAATGTTGAAACAAGGATTGTCATTTAAACATCCAGATGATGTAGAAAGGGTGATATGCTCGTACTTCAGGCTCTCCGAGTATGAGAGGCTGGAGTTGTTCTTGGAATGTATCAAGGGTTCTTATGAACTTACAGGATCGACTTATGATTTATTGGTTGCTGGCTATCGAAGAGCCGGGTTATCTGACAAGTTGAGTGATATGAAACTAGATGGTGGATCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

411

Amino Acids

46.46

Weight (kDa)

5.42

Isoelectric Point (pI)

44.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 101 - 144 4.7e-08 Pentatricopeptide repeat domain
TPR_24 PF23276 106 - 231 6.9e-08 Fungal tetratrico peptide repeats
PPR_long PF17177 115 - 187 5.6e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 132 - 181 2.9e-07 PPR repeat family
PPR_2 PF13041 204 - 252 7.3e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016771)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36160
malus_domestica MD08G1118800.v1.1
prunus_persica Prupe.1G453000_v2.0.a1
pyrus_communis pycom08g09920
rosa_chinensis RchiOBHm_Chr6g0305711
rosa_laevigata RLG00000010866
rosa_multiflora Rmu_sc0001809.1_g000036
rosa_roxburghii Rroxscaffold_7G00162420
rosa_rugosa Rorug06G0343400
rosa_samantha Rh6AG454900 Rh6BG446600 Rh6CG468800 Rh6DG455400
rosa_wichuraiana Rw6G039670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 956
AccII CGCG 1 cut(s) 133
AciI CCGC 2 cut(s) 158, 161
AclWI GGATC 2 cut(s) 1153, 1234
AcoI YGGCCR 1 cut(s) 769
AcsI RAATTY 3 cut(s) 48, 445, 782
AcuI CTGAAG 1 cut(s) 1060
AfaI GTAC 4 cut(s) 578, 965, 998, 1073
AflII CTTAAG 1 cut(s) 13
AgsI TTSAA 5 cut(s) 392, 412, 617, 655, 1018
AluBI AGCT 9 cut(s) 60, 313, 465, 486, 572, 593, 667, 765, 889
AluI AGCT 9 cut(s) 60, 313, 465, 486, 572, 593, 667, 765, 889
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 3 cut(s) 72, 633, 890
AlwI GGATC 2 cut(s) 1153, 1234
AlwNI CAGNNNCTG 1 cut(s) 631
Ama87I CYCGRG 1 cut(s) 893
AoxI GGCC 2 cut(s) 710, 769
ApeKI GCWGC 1 cut(s) 593
ApoI RAATTY 3 cut(s) 48, 445, 782
Asp700I GAANNNNTTC 1 cut(s) 449
AspS9I GGNCC 2 cut(s) 711, 940
AsuC2I CCSGG 2 cut(s) 442, 1186
AsuHPI GGTGA 1 cut(s) 1072
AvaI CYCGRG 1 cut(s) 893
AvaII GGWCC 1 cut(s) 940
BalI TGGCCA 1 cut(s) 771
BanII GRGCYC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 1 cut(s) 580
BccI CCATC 4 cut(s) 109, 787, 832, 1214
BclI TGATCA 1 cut(s) 913
BcnI CCSGG 2 cut(s) 442, 1186
BcoDI GTCTC 3 cut(s) 72, 633, 890
BfaI CTAG 1 cut(s) 1217
BfmI CTRYAG 1 cut(s) 402
BfrI CTTAAG 1 cut(s) 13
BisI GCNGC 2 cut(s) 159, 594
BlsI GCNGC 2 cut(s) 160, 595
BmcAI AGTACT 1 cut(s) 998
Bme1390I CCNGG 2 cut(s) 442, 1186
Bme18I GGWCC 1 cut(s) 940
BmeT110I CYCGRG 1 cut(s) 893
BmgT120I GGNCC 2 cut(s) 711, 940
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 442, 1186
BmsI GCATC 3 cut(s) 14, 511, 555
BplI GAGNNNNNCTC 4 cut(s) 46, 78, 155, 187
BpmI CTGGAG 1 cut(s) 1121
BpuMI CCSGG 2 cut(s) 442, 1186
BsaBI GATNNNNATC 1 cut(s) 297
Bse118I RCCGGY 1 cut(s) 937
Bse3DI GCAATG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 297
BseGI GGATG 2 cut(s) 966, 1039
BseJI GATNNNNATC 1 cut(s) 297
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 4 cut(s) 77, 83, 501, 825
BseRI GAGGAG 2 cut(s) 772, 899
BseXI GCAGC 1 cut(s) 580
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 2 cut(s) 712, 771
BsiHKAI GWGCWC 1 cut(s) 488
BsiHKCI CYCGRG 1 cut(s) 893
BsiSI CCGG 3 cut(s) 441, 938, 1185
BsmAI GTCTC 3 cut(s) 72, 633, 890
BsmI GAATGC 1 cut(s) 524
BsnI GGCC 2 cut(s) 712, 771
BsoBI CYCGRG 1 cut(s) 893
Bsp1286I GDGCHC 1 cut(s) 488
Bsp143I GATC 5 cut(s) 292, 298, 913, 1145, 1226
Bsp68I TCGCGA 1 cut(s) 133
BspACI CCGC 2 cut(s) 158, 161
BspANI GGCC 2 cut(s) 712, 771
BspCNI CTCAG 4 cut(s) 76, 82, 500, 826
BspFNI CGCG 1 cut(s) 133
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 123
BspMAI CTGCAG 1 cut(s) 406
BspPI GGATC 2 cut(s) 1153, 1234
BspQI GCTCTTC 1 cut(s) 1174
BspTI CTTAAG 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 360
BsrFI RCCGGY 1 cut(s) 937
BssAI RCCGGY 1 cut(s) 937
BssMI GATC 5 cut(s) 292, 298, 913, 1145, 1226
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 3 cut(s) 31, 442, 1174
BstAFI CTTAAG 1 cut(s) 13
BstC8I GCNNGC 6 cut(s) 97, 101, 570, 598, 669, 1171
BstDEI CTNAG 5 cut(s) 63, 69, 83, 487, 834
BstF5I GGATG 2 cut(s) 966, 1039
BstFNI CGCG 1 cut(s) 133
BstKTI GATC 5 cut(s) 295, 301, 916, 1148, 1229
BstMAI GTCTC 3 cut(s) 72, 633, 890
BstMBI GATC 5 cut(s) 292, 298, 913, 1145, 1226
BstMWI GCNNNNNNNGC 4 cut(s) 79, 158, 590, 745
BstSCI CCNGG 2 cut(s) 440, 1184
BstSFI CTRYAG 1 cut(s) 402
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 580
BstX2I RGATCY 1 cut(s) 1226
BstYI RGATCY 1 cut(s) 1226
BsuRI GGCC 2 cut(s) 712, 771
BtgZI GCGATG 1 cut(s) 806
BtsCI GGATG 2 cut(s) 966, 1039
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 1 cut(s) 453
BtuMI TCGCGA 1 cut(s) 133
Cac8I GCNNGC 6 cut(s) 97, 101, 570, 598, 669, 1171
CaiI CAGNNNCTG 1 cut(s) 631
CciI TCATGA 1 cut(s) 295
Cfr10I RCCGGY 1 cut(s) 937
Cfr13I GGNCC 2 cut(s) 711, 940
Csp6I GTAC 4 cut(s) 577, 964, 997, 1072
CviAII CATG 4 cut(s) 296, 425, 529, 970
CviQI GTAC 4 cut(s) 577, 964, 997, 1072
DdeI CTNAG 5 cut(s) 63, 69, 83, 487, 834
DpnI GATC 5 cut(s) 294, 300, 915, 1147, 1228
DpnII GATC 5 cut(s) 292, 298, 913, 1145, 1226
DraI TTTAAA 2 cut(s) 499, 1036
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 3 cut(s) 31, 442, 1174
EarI CTCTTC 3 cut(s) 31, 442, 1174
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 488
Eco32I GATATC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 940
Eco53kI GAGCTC 1 cut(s) 486
Eco57I CTGAAG 1 cut(s) 1060
Eco88I CYCGRG 1 cut(s) 893
EcoICRI GAGCTC 1 cut(s) 486
EcoRV GATATC 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 488
FaeI CATG 4 cut(s) 299, 428, 532, 973
FatI CATG 4 cut(s) 295, 424, 528, 969
FbaI TGATCA 1 cut(s) 913
Fnu4HI GCNGC 2 cut(s) 159, 594
FokI GGATG 2 cut(s) 973, 1026
FriOI GRGCYC 1 cut(s) 488
Fsp4HI GCNGC 2 cut(s) 159, 594
FspBI CTAG 1 cut(s) 1217
GluI GCNGC 2 cut(s) 159, 594
GsuI CTGGAG 1 cut(s) 1121
HaeIII GGCC 2 cut(s) 712, 771
HapII CCGG 3 cut(s) 441, 938, 1185
Hin1II CATG 4 cut(s) 299, 428, 532, 973
HindIII AAGCTT 1 cut(s) 570
HinfI GANTC 7 cut(s) 135, 170, 194, 340, 506, 605, 705
HpaII CCGG 3 cut(s) 441, 938, 1185
HphI GGTGA 1 cut(s) 1072
Hpy166II GTNNAC 2 cut(s) 453, 943
Hpy188III TCNNGA 7 cut(s) 132, 230, 251, 296, 702, 895, 1043
Hpy8I GTNNAC 2 cut(s) 453, 943
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 3 cut(s) 155, 737, 862
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 7 cut(s) 353, 358, 404, 524, 568, 753, 853
HpyF10VI GCNNNNNNNGC 4 cut(s) 79, 158, 590, 745
HpyF3I CTNAG 5 cut(s) 63, 69, 83, 487, 834
Hsp92II CATG 4 cut(s) 299, 428, 532, 973
Ksp22I TGATCA 1 cut(s) 913
Kzo9I GATC 5 cut(s) 292, 298, 913, 1145, 1226
LguI GCTCTTC 1 cut(s) 1174
LmnI GCTCC 2 cut(s) 874, 886
Lsp1109I GCAGC 1 cut(s) 580
LweI GCATC 3 cut(s) 14, 511, 555
MaeI CTAG 1 cut(s) 1217
MaeIII GTNAC 2 cut(s) 86, 302
MalI GATC 5 cut(s) 294, 300, 915, 1147, 1228
MboI GATC 5 cut(s) 292, 298, 913, 1145, 1226
MboII GAAGA 9 cut(s) 48, 210, 213, 335, 360, 429, 826, 1191, 1221
MflI RGATCY 1 cut(s) 1226
MhlI GDGCHC 1 cut(s) 488
MlsI TGGCCA 1 cut(s) 771
MluCI AATT 6 cut(s) 48, 260, 412, 445, 650, 782
MluNI TGGCCA 1 cut(s) 771
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 2 cut(s) 534, 954
MnlI CCTC 9 cut(s) 102, 112, 187, 235, 370, 484, 750, 877, 1089
Mox20I TGGCCA 1 cut(s) 771
Mph1103I ATGCAT 1 cut(s) 526
MroXI GAANNNNTTC 1 cut(s) 449
MscI TGGCCA 1 cut(s) 771
MseI TTAA 5 cut(s) 14, 498, 542, 902, 1035
MslI CAYNNNNRTG 1 cut(s) 1044
Msp20I TGGCCA 1 cut(s) 771
MspCI CTTAAG 1 cut(s) 13
MspI CCGG 3 cut(s) 441, 938, 1185
MspR9I CCNGG 2 cut(s) 442, 1186
Mva1269I GAATGC 1 cut(s) 524
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 4 cut(s) 79, 158, 590, 745
NciI CCSGG 2 cut(s) 442, 1186
NdeII GATC 5 cut(s) 292, 298, 913, 1145, 1226
NlaIII CATG 4 cut(s) 299, 428, 532, 973
NlaIV GGNNCC 1 cut(s) 123
NruI TCGCGA 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 526
PaeR7I CTCGAG 1 cut(s) 893
PagI TCATGA 1 cut(s) 295
PciSI GCTCTTC 1 cut(s) 1174
PctI GAATGC 1 cut(s) 524
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 6 cut(s) 135, 194, 340, 506, 605, 705
PfoI TCCNGGA 1 cut(s) 440
PkrI GCNGC 2 cut(s) 160, 595
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PsiI TTATAA 1 cut(s) 956
Psp124BI GAGCTC 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 711, 940
PsrI GAACNNNNNNTAC 2 cut(s) 1111, 1143
PstI CTGCAG 1 cut(s) 406
PstNI CAGNNNCTG 1 cut(s) 631
PsuI RGATCY 1 cut(s) 1226
RruI TCGCGA 1 cut(s) 133
RsaI GTAC 4 cut(s) 578, 965, 998, 1073
RsaNI GTAC 4 cut(s) 577, 964, 997, 1072
RseI CAYNNNNRTG 1 cut(s) 1044
SacI GAGCTC 1 cut(s) 488
SapI GCTCTTC 1 cut(s) 1174
SaqAI TTAA 5 cut(s) 14, 498, 542, 902, 1035
SatI GCNGC 2 cut(s) 159, 594
Sau3AI GATC 5 cut(s) 292, 298, 913, 1145, 1226
Sau96I GGNCC 2 cut(s) 711, 940
ScaI AGTACT 1 cut(s) 998
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 442, 1186
SduI GDGCHC 1 cut(s) 488
SfaNI GCATC 3 cut(s) 14, 511, 555
SfcI CTRYAG 1 cut(s) 402
Sfr274I CTCGAG 1 cut(s) 893
SinI GGWCC 1 cut(s) 940
SlaI CTCGAG 1 cut(s) 893
SmiMI CAYNNNNRTG 1 cut(s) 1044
SmlI CTYRAG 2 cut(s) 13, 893
SmoI CTYRAG 2 cut(s) 13, 893
Sse9I AATT 6 cut(s) 48, 260, 412, 445, 650, 782
SsiI CCGC 2 cut(s) 158, 161
SspMI CTAG 1 cut(s) 1217
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 2 cut(s) 440, 1184
TaaI ACNGT 1 cut(s) 308
TaqI TCGA 4 cut(s) 858, 894, 1148, 1177
TasI AATT 6 cut(s) 48, 260, 412, 445, 650, 782
TatI WGTACW 1 cut(s) 996
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 6 cut(s) 135, 194, 340, 506, 605, 705
Tru1I TTAA 5 cut(s) 14, 498, 542, 902, 1035
Tru9I TTAA 5 cut(s) 14, 498, 542, 902, 1035
TscAI CASTG 1 cut(s) 460
TseI GCWGC 1 cut(s) 593
TspDTI ATGAA 5 cut(s) 413, 517, 1149, 1221, 1226
TspRI CASTG 1 cut(s) 460
Vha464I CTTAAG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 940
XapI RAATTY 3 cut(s) 48, 445, 782
XhoI CTCGAG 1 cut(s) 893
XmnI GAANNNNTTC 1 cut(s) 449
XspI CTAG 1 cut(s) 1217
ZrmI AGTACT 1 cut(s) 998
Zsp2I ATGCAT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.