RLG00000010866

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0016771
Physical Location & Seq
Reverse (-)
4867871 .. 4869256
1386 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010866

Sequence Viewer

Length: 1245 bp
ATGGCATCAGTCTTAAGAGTTCTATCAGCGACGAGAAGAGTTTTGGAAATTCCGAGTAGCTCTCAGTCTCAGCGTTGTTGGCTAAGTAACCAAGCGTGCTTGCTTCGGAGGTTGATGGAGGAACCCAAATCGCGAATCAAAACCCTTCTTGCTTCTGCGGCGGAGAAAGACTCTGCTCTTCAAAGCTCTGATTTTTCTTGGGAATCACTCGTTAGTTCTCTTGCTTCTTCTTCCTCTCCTGACAAAACCCACTTGGTTCTGGAATGGAAATTGGAGAAGTTGCTAAAGGAGAATGAGAGAGATCATGATCGTTACTGTAAGCTGATATCTCTATGTGGAAAAGTTCGGAATCTCCCACTTGCAATGCAAGTCTTTTCTTCTATGGAGGCCAATGGAGTTCAACCCACTTCTGCAGTTTTCAATTCCCTTATTCATGTTTGCTTCTCTTCCGGGAATTTGTTCACTGCTATCAGCTTGTTTGAGATTATGGAGAGCTCAGAGGGATTTAAACCTGATTCCGACACTTACGATGCATTCATGTCTGCTTTCTTAAAGTCGGGCAAAACTGATTTGATGCAAGCTTGGTACTCTGCCAAGAAAGCTGCTGGCTTTGATTCTGATATTCAAACCTATCAGTCTCTGATTTCGGGTTGTATCAAATTGAAAAATTACGAGCTTGGTGATATGTTTTACACAGAAATGGTATTGTCGGGAATCATGCCCAACTTGCCCATATTGGAGTATATGCTGGATGGGCTTTGTAAGAGGAGAAGCTCTAGCCAAGTCAAAGAATTCTTGGAGATGGTGTGTGGTTATGGGTGGAAGATGAGTGGGAAAATGGCTGAGATGGTTGTGGGGTTGCTTATTGAACTTGGGAAGGTGGAGCGATTGGAGGAGCTACTTGTGACTTTAATGGAGAGTGATCAGACTTCAGAAGTTTTGTTGCCGGTCCATTGTGGGATTATAAGGACGTACGCCATGATGGATAGATTGGATGATGTAGAGTACTCTGTGGGTAGAATGTTGAAACAAGGATTGTCATTTAAACATGCGGATGATGTAGAAAAGGTGATATGCTCGTACTTCAGGCTCTCGGAGTATGATAGGCTGGAGTTGTTCTTGGAATGTATCAAGGGTTCTTATGAACTTACAGGATCGACTTATGATTTATTGGTTGCTGGCTATCGAAGAGCCGGGTTATCTGACAAGTTGAGTGATATGAAACTAGATGGTGGATCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

415

Amino Acids

46.48

Weight (kDa)

5.41

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 104 - 147 4.2e-08 Pentatricopeptide repeat domain
PPR_long PF17177 107 - 190 5.1e-06 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 109 - 226 1.2e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 135 - 184 3e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016771)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36160
malus_domestica MD08G1118800.v1.1
prunus_persica Prupe.1G453000_v2.0.a1
pyrus_communis pycom08g09920
rosa_chinensis RchiOBHm_Chr6g0305711
rosa_laevigata RLG00000010866
rosa_multiflora Rmu_sc0001809.1_g000036
rosa_roxburghii Rroxscaffold_7G00162420
rosa_rugosa Rorug06G0343400
rosa_samantha Rh6AG454900 Rh6BG446600 Rh6CG468800 Rh6DG455400
rosa_wichuraiana Rw6G039670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 965
AccII CGCG 1 cut(s) 133
AciI CCGC 3 cut(s) 158, 161, 1052
AclWI GGATC 2 cut(s) 1162, 1243
AcsI RAATTY 3 cut(s) 48, 454, 791
AcuI CTGAAG 2 cut(s) 915, 1069
AfaI GTAC 4 cut(s) 587, 974, 1007, 1082
AflII CTTAAG 1 cut(s) 13
AgsI TTSAA 7 cut(s) 182, 401, 421, 626, 664, 869, 1027
Alw21I GWGCWC 1 cut(s) 497
Alw26I GTCTC 2 cut(s) 72, 642
AlwI GGATC 2 cut(s) 1162, 1243
AlwNI CAGNNNCTG 1 cut(s) 640
AoxI GGCC 1 cut(s) 387
ApeKI GCWGC 1 cut(s) 602
ApoI RAATTY 3 cut(s) 48, 454, 791
Asp700I GAANNNNTTC 1 cut(s) 458
AspS9I GGNCC 1 cut(s) 949
AsuC2I CCSGG 2 cut(s) 451, 1195
AsuHPI GGTGA 2 cut(s) 692, 1081
AvaII GGWCC 1 cut(s) 949
BanII GRGCYC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 497
BbvI GCAGC 1 cut(s) 589
BccI CCATC 6 cut(s) 109, 746, 796, 841, 976, 1223
BclI TGATCA 1 cut(s) 922
BcnI CCSGG 2 cut(s) 451, 1195
BcoDI GTCTC 2 cut(s) 72, 642
BfaI CTAG 2 cut(s) 777, 1226
BfmI CTRYAG 1 cut(s) 411
BfrI CTTAAG 1 cut(s) 13
BisI GCNGC 2 cut(s) 159, 603
BlsI GCNGC 2 cut(s) 160, 604
BmcAI AGTACT 1 cut(s) 1007
Bme1390I CCNGG 2 cut(s) 451, 1195
Bme18I GGWCC 1 cut(s) 949
BmgT120I GGNCC 1 cut(s) 949
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 451, 1195
BmsI GCATC 3 cut(s) 14, 520, 564
BplI GAGNNNNNCTC 4 cut(s) 46, 78, 155, 187
BpmI CTGGAG 1 cut(s) 1130
BpuMI CCSGG 2 cut(s) 451, 1195
BsaBI GATNNNNATC 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 791, 821
Bse118I RCCGGY 1 cut(s) 946
Bse3DI GCAATG 1 cut(s) 369
Bse8I GATNNNNATC 1 cut(s) 306
BseGI GGATG 3 cut(s) 757, 1000, 1060
BseJI GATNNNNATC 1 cut(s) 306
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 4 cut(s) 77, 83, 510, 834
BseRI GAGGAG 2 cut(s) 781, 908
BseXI GCAGC 1 cut(s) 589
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 389
BsiHKAI GWGCWC 1 cut(s) 497
BsiSI CCGG 3 cut(s) 450, 947, 1194
BsiWI CGTACG 1 cut(s) 972
BsmAI GTCTC 2 cut(s) 72, 642
BsmI GAATGC 1 cut(s) 533
BsnI GGCC 1 cut(s) 389
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 5 cut(s) 301, 307, 922, 1154, 1235
Bsp68I TCGCGA 1 cut(s) 133
BspACI CCGC 3 cut(s) 158, 161, 1052
BspANI GGCC 1 cut(s) 389
BspCNI CTCAG 4 cut(s) 76, 82, 509, 835
BspFNI CGCG 1 cut(s) 133
BspHI TCATGA 1 cut(s) 304
BspLI GGNNCC 1 cut(s) 123
BspMAI CTGCAG 1 cut(s) 415
BspPI GGATC 2 cut(s) 1162, 1243
BspQI GCTCTTC 2 cut(s) 183, 1183
BspTI CTTAAG 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 946
BssAI RCCGGY 1 cut(s) 946
BssMI GATC 5 cut(s) 301, 307, 922, 1154, 1235
Bst4CI ACNGT 1 cut(s) 317
Bst6I CTCTTC 4 cut(s) 31, 183, 451, 1183
BstAFI CTTAAG 1 cut(s) 13
BstC8I GCNNGC 5 cut(s) 97, 101, 579, 607, 1180
BstDEI CTNAG 5 cut(s) 63, 69, 83, 496, 843
BstF5I GGATG 3 cut(s) 757, 1000, 1060
BstFNI CGCG 1 cut(s) 133
BstKTI GATC 5 cut(s) 304, 310, 925, 1157, 1238
BstMAI GTCTC 2 cut(s) 72, 642
BstMBI GATC 5 cut(s) 301, 307, 922, 1154, 1235
BstMWI GCNNNNNNNGC 5 cut(s) 79, 158, 599, 727, 754
BstNSI RCATGY 1 cut(s) 1052
BstSCI CCNGG 2 cut(s) 449, 1193
BstSFI CTRYAG 1 cut(s) 411
BstUI CGCG 1 cut(s) 133
BstV1I GCAGC 1 cut(s) 589
BstX2I RGATCY 1 cut(s) 1235
BstYI RGATCY 1 cut(s) 1235
BsuRI GGCC 1 cut(s) 389
BtsCI GGATG 3 cut(s) 757, 1000, 1060
BtsI GCAGTG 1 cut(s) 462
BtsIMutI CAGTG 1 cut(s) 462
BtuMI TCGCGA 1 cut(s) 133
Cac8I GCNNGC 5 cut(s) 97, 101, 579, 607, 1180
CaiI CAGNNNCTG 1 cut(s) 640
CciI TCATGA 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 946
Cfr13I GGNCC 1 cut(s) 949
Csp6I GTAC 4 cut(s) 586, 973, 1006, 1081
CviAII CATG 6 cut(s) 305, 434, 538, 718, 979, 1049
CviQI GTAC 4 cut(s) 586, 973, 1006, 1081
DdeI CTNAG 5 cut(s) 63, 69, 83, 496, 843
DpnI GATC 5 cut(s) 303, 309, 924, 1156, 1237
DpnII GATC 5 cut(s) 301, 307, 922, 1154, 1235
DraI TTTAAA 2 cut(s) 508, 1045
Eam1104I CTCTTC 4 cut(s) 31, 183, 451, 1183
EarI CTCTTC 4 cut(s) 31, 183, 451, 1183
EciI GGCGGA 1 cut(s) 176
Ecl136II GAGCTC 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 497
Eco32I GATATC 1 cut(s) 327
Eco47I GGWCC 1 cut(s) 949
Eco53kI GAGCTC 1 cut(s) 495
Eco57I CTGAAG 2 cut(s) 915, 1069
EcoICRI GAGCTC 1 cut(s) 495
EcoRI GAATTC 1 cut(s) 791
EcoRV GATATC 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 535
EcoT38I GRGCYC 1 cut(s) 497
FaeI CATG 6 cut(s) 308, 437, 541, 721, 982, 1052
FatI CATG 6 cut(s) 304, 433, 537, 717, 978, 1048
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 2 cut(s) 159, 603
FokI GGATG 3 cut(s) 764, 1007, 1067
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 2 cut(s) 159, 603
FspBI CTAG 2 cut(s) 777, 1226
GluI GCNGC 2 cut(s) 159, 603
GsuI CTGGAG 1 cut(s) 1130
HaeIII GGCC 1 cut(s) 389
HapII CCGG 3 cut(s) 450, 947, 1194
Hin1II CATG 6 cut(s) 308, 437, 541, 721, 982, 1052
HindIII AAGCTT 1 cut(s) 579
HinfI GANTC 7 cut(s) 135, 170, 203, 349, 515, 614, 714
HpaII CCGG 3 cut(s) 450, 947, 1194
HphI GGTGA 2 cut(s) 692, 1081
Hpy166II GTNNAC 1 cut(s) 462
Hpy188III TCNNGA 5 cut(s) 132, 239, 260, 305, 711
Hpy8I GTNNAC 1 cut(s) 462
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 155, 871
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 1 cut(s) 971
HpyCH4V TGCA 5 cut(s) 362, 367, 413, 533, 577
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 158, 599, 727, 754
HpyF3I CTNAG 5 cut(s) 63, 69, 83, 496, 843
HpySE526I ACGT 1 cut(s) 971
Hsp92II CATG 6 cut(s) 308, 437, 541, 721, 982, 1052
Ksp22I TGATCA 1 cut(s) 922
Kzo9I GATC 5 cut(s) 301, 307, 922, 1154, 1235
LguI GCTCTTC 2 cut(s) 183, 1183
LmnI GCTCC 2 cut(s) 883, 895
Lsp1109I GCAGC 1 cut(s) 589
LweI GCATC 3 cut(s) 14, 520, 564
MaeI CTAG 2 cut(s) 777, 1226
MaeII ACGT 1 cut(s) 971
MaeIII GTNAC 3 cut(s) 86, 311, 904
MalI GATC 5 cut(s) 303, 309, 924, 1156, 1237
MboI GATC 5 cut(s) 301, 307, 922, 1154, 1235
MboII GAAGA 9 cut(s) 48, 170, 219, 222, 369, 438, 835, 1200, 1230
MflI RGATCY 1 cut(s) 1235
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 7 cut(s) 48, 269, 421, 454, 659, 667, 791
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 543
MnlI CCTC 7 cut(s) 102, 112, 244, 379, 493, 759, 886
Mph1103I ATGCAT 1 cut(s) 535
MroXI GAANNNNTTC 1 cut(s) 458
MseI TTAA 5 cut(s) 14, 507, 551, 911, 1044
MslI CAYNNNNRTG 2 cut(s) 698, 1053
MspCI CTTAAG 1 cut(s) 13
MspI CCGG 3 cut(s) 450, 947, 1194
MspR9I CCNGG 2 cut(s) 451, 1195
Mva1269I GAATGC 1 cut(s) 533
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 5 cut(s) 79, 158, 599, 727, 754
NciI CCSGG 2 cut(s) 451, 1195
NdeII GATC 5 cut(s) 301, 307, 922, 1154, 1235
NlaIII CATG 6 cut(s) 308, 437, 541, 721, 982, 1052
NlaIV GGNNCC 1 cut(s) 123
NmuCI GTSAC 1 cut(s) 904
NruI TCGCGA 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 535
NspI RCATGY 1 cut(s) 1052
PagI TCATGA 1 cut(s) 304
PciSI GCTCTTC 2 cut(s) 183, 1183
PctI GAATGC 1 cut(s) 533
PdmI GAANNNNTTC 1 cut(s) 458
PfeI GAWTC 6 cut(s) 135, 203, 349, 515, 614, 714
Pfl23II CGTACG 1 cut(s) 972
PfoI TCCNGGA 1 cut(s) 449
PkrI GCNGC 2 cut(s) 160, 604
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PsiI TTATAA 1 cut(s) 965
Psp124BI GAGCTC 1 cut(s) 497
PspLI CGTACG 1 cut(s) 972
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 949
PsrI GAACNNNNNNTAC 2 cut(s) 1120, 1152
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 640
PsuI RGATCY 1 cut(s) 1235
RruI TCGCGA 1 cut(s) 133
RsaI GTAC 4 cut(s) 587, 974, 1007, 1082
RsaNI GTAC 4 cut(s) 586, 973, 1006, 1081
RseI CAYNNNNRTG 2 cut(s) 698, 1053
SacI GAGCTC 1 cut(s) 497
SapI GCTCTTC 2 cut(s) 183, 1183
SaqAI TTAA 5 cut(s) 14, 507, 551, 911, 1044
SatI GCNGC 2 cut(s) 159, 603
Sau3AI GATC 5 cut(s) 301, 307, 922, 1154, 1235
Sau96I GGNCC 1 cut(s) 949
ScaI AGTACT 1 cut(s) 1007
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 451, 1195
SduI GDGCHC 1 cut(s) 497
SfaNI GCATC 3 cut(s) 14, 520, 564
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 949
SmiMI CAYNNNNRTG 2 cut(s) 698, 1053
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
Sse9I AATT 7 cut(s) 48, 269, 421, 454, 659, 667, 791
SsiI CCGC 3 cut(s) 158, 161, 1052
SspMI CTAG 2 cut(s) 777, 1226
SstI GAGCTC 1 cut(s) 497
StyD4I CCNGG 2 cut(s) 449, 1193
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 1 cut(s) 974
TaqI TCGA 2 cut(s) 1157, 1186
TasI AATT 7 cut(s) 48, 269, 421, 454, 659, 667, 791
TatI WGTACW 1 cut(s) 1005
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 6 cut(s) 135, 203, 349, 515, 614, 714
Tru1I TTAA 5 cut(s) 14, 507, 551, 911, 1044
Tru9I TTAA 5 cut(s) 14, 507, 551, 911, 1044
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 1 cut(s) 904
TseI GCWGC 1 cut(s) 602
Tsp45I GTSAC 1 cut(s) 904
TspDTI ATGAA 5 cut(s) 422, 526, 1158, 1230, 1235
TspRI CASTG 1 cut(s) 469
Vha464I CTTAAG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 949
XapI RAATTY 3 cut(s) 48, 454, 791
XceI RCATGY 1 cut(s) 1052
XmnI GAANNNNTTC 1 cut(s) 458
XspI CTAG 2 cut(s) 777, 1226
ZrmI AGTACT 1 cut(s) 1007
Zsp2I ATGCAT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.