Prupe.1G539100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
44066675 .. 44067541
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G539100.1

Sequence Viewer

Length: 276 bp
ATGGATAGAATTCCACCTCCTAGTGATAAAAAGGAAGGTTTATTTTCTTGCTGGGGACGTCTAAAGTTGAAGCTTCCGTGGATAAGAGAACTCGGACGACAGGCAACCACAAGGCAGAGAAATGTCGGAAATCAGGGAGGTTATCGGTATGATCGTGTGAGCTATGAAAAGAACTTTGATGATGGTTCTTGGGACAAAATGAATGAGGACTCTTCTCAACGAAGCTTCTCAGCCAGATATGCTGCCTCTTCATTCAAATCACATGGAGATAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.59

Weight (kDa)

9.72

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018129)

Species Orthologous Gene IDs
prunus_persica Prupe.1G539100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0233511
rosa_laevigata RLG00000001254
rosa_multiflora Rmu_sc0000029.1_g000013
rosa_roxburghii Rroxscaffold_3G00227240
rosa_samantha Rh7AG437400 Rh7BG409900 Rh7CG457000 Rh7DG426400
rosa_wichuraiana Rw0G008500 Rw7G036070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 58
AgsI TTSAA 2 cut(s) 70, 256
AluBI AGCT 3 cut(s) 73, 162, 225
AluI AGCT 3 cut(s) 73, 162, 225
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 9
BbvI GCAGC 1 cut(s) 229
BccI CCATC 1 cut(s) 176
BfaI CTAG 1 cut(s) 21
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 77
BseDI CCNNGG 1 cut(s) 77
BseMII CTCAG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 51
BslFI GGGAC 2 cut(s) 69, 206
BsmFI GGGAC 2 cut(s) 69, 206
Bsp143I GATC 1 cut(s) 151
BspCNI CTCAG 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 1 cut(s) 151
BssNI GRCGYC 1 cut(s) 58
Bst6I CTCTTC 2 cut(s) 217, 253
BstACI GRCGYC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 229
BstDSI CCRYGG 1 cut(s) 77
BstKTI GATC 1 cut(s) 154
BstMBI GATC 1 cut(s) 151
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 229
BtgI CCRYGG 1 cut(s) 77
CviAII CATG 1 cut(s) 263
CviJI RGCY 4 cut(s) 73, 162, 225, 233
CviKI_1 RGCY 4 cut(s) 73, 162, 225, 233
DdeI CTNAG 1 cut(s) 229
DpnI GATC 1 cut(s) 153
DpnII GATC 1 cut(s) 151
Eam1104I CTCTTC 2 cut(s) 217, 253
EarI CTCTTC 2 cut(s) 217, 253
EcoRI GAATTC 1 cut(s) 9
FaeI CATG 1 cut(s) 266
FaiI YATR 4 cut(s) 150, 165, 240, 264
FaqI GGGAC 2 cut(s) 69, 206
FatI CATG 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 21
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 55
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 1 cut(s) 266
HindIII AAGCTT 2 cut(s) 71, 223
HinfI GANTC 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 95, 128
HpyAV CCTTC 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 1 cut(s) 266
Kzo9I GATC 1 cut(s) 151
LpnPI CCDG 4 cut(s) 37, 86, 119, 247
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 58
MalI GATC 1 cut(s) 153
MboI GATC 1 cut(s) 151
MboII GAAGA 2 cut(s) 204, 240
MluCI AATT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 4 cut(s) 27, 131, 199, 256
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 1 cut(s) 151
NlaIII CATG 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 51
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 1 cut(s) 151
SchI GAGTC 1 cut(s) 203
SetI ASST 7 cut(s) 19, 40, 61, 75, 142, 164, 227
Sse9I AATT 1 cut(s) 9
SspMI CTAG 1 cut(s) 21
TaiI ACGT 1 cut(s) 61
TasI AATT 1 cut(s) 9
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 180, 215, 240
TspGWI ACGGA 1 cut(s) 66
XapI RAATTY 1 cut(s) 9
XspI CTAG 1 cut(s) 21
ZraI GACGTC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.