Rw7G036070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0018129
Physical Location & Seq
Reverse (-)
54257750 .. 54258025
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G036070.1

Sequence Viewer

Length: 276 bp
ATGGACCAAGTTCCATCCCCTAAAAACACAAACCAAGGAATACTTTCTTGCTGGGGACGTCTAAAGTTCAAGCTTCCATGGACAAGCAGATTAAGACGATACACCACCGCAAGGCAGAGAAGTATCGGAAACCCGGGCGGCGGGTTTAGGTATGATCCTCTGAGCTATGCGCAAAACTTCGACGATGGTTGGGACGAAACTGATGAAGACTCTTCTAAACGCGGGTTTTCAGCTAGATATGCTGCCCCTTCTTTTAAATCATCTGGAGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.33

Weight (kDa)

9.66

Isoelectric Point (pI)

54.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018129)

Species Orthologous Gene IDs
prunus_persica Prupe.1G539100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0233511
rosa_laevigata RLG00000001254
rosa_multiflora Rmu_sc0000029.1_g000013
rosa_roxburghii Rroxscaffold_3G00227240
rosa_samantha Rh7AG437400 Rh7BG409900 Rh7CG457000 Rh7DG426400
rosa_wichuraiana Rw0G008500 Rw7G036070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 61
Acc16I TGCGCA 1 cut(s) 171
AccII CGCG 1 cut(s) 222
AciI CCGC 4 cut(s) 108, 138, 141, 222
AclWI GGATC 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 111, 140
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 3 cut(s) 73, 165, 233
AluI AGCT 3 cut(s) 73, 165, 233
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 134, 135
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 229
BccI CCATC 2 cut(s) 22, 179
BcnI CCSGG 2 cut(s) 134, 135
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 234
BisI GCNGC 2 cut(s) 139, 243
BlsI GCNGC 2 cut(s) 140, 244
Bme1390I CCNGG 2 cut(s) 134, 135
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 2 cut(s) 134, 135
BpiI GAAGAC 1 cut(s) 213
BpuMI CCSGG 2 cut(s) 134, 135
BsaHI GRCGYC 1 cut(s) 58
BsaJI CCNNGG 3 cut(s) 34, 77, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 140
BseDI CCNNGG 3 cut(s) 34, 77, 133
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 111, 140
BseMII CTCAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 2 cut(s) 69, 206
BslI CCNNNNNNNGG 2 cut(s) 111, 140
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 2 cut(s) 69, 206
BsoBI CYCGRG 1 cut(s) 133
Bsp143I GATC 1 cut(s) 154
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 4 cut(s) 108, 138, 141, 222
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 1 cut(s) 222
BspPI GGATC 1 cut(s) 149
BssECI CCNNGG 3 cut(s) 34, 77, 133
BssMI GATC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 58
BssT1I CCWWGG 2 cut(s) 34, 77
Bst6I CTCTTC 1 cut(s) 217
BstACI GRCGYC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 161
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 14
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 132, 133
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 14
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 4
Cfr9I CCCGGG 1 cut(s) 133
CviAII CATG 1 cut(s) 78
CviJI RGCY 3 cut(s) 73, 165, 233
CviKI_1 RGCY 3 cut(s) 73, 165, 233
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
DraI TTTAAA 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 34, 77
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 133
EcoT14I CCWWGG 2 cut(s) 34, 77
ErhI CCWWGG 2 cut(s) 34, 77
FaeI CATG 1 cut(s) 81
FaiI YATR 4 cut(s) 79, 153, 168, 240
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 2 cut(s) 69, 206
FatI CATG 1 cut(s) 77
FauI CCCGC 2 cut(s) 134, 215
Fnu4HI GCNGC 2 cut(s) 139, 243
Fsp4HI GCNGC 2 cut(s) 139, 243
FspBI CTAG 1 cut(s) 234
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 1 cut(s) 171
GluI GCNGC 2 cut(s) 139, 243
GsaI CCCAGC 1 cut(s) 55
HapII CCGG 1 cut(s) 134
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 1 cut(s) 81
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 209
HpaII CCGG 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 128, 162
Hpy188III TCNNGA 1 cut(s) 264
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 258
HpyCH4IV ACGT 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 1 cut(s) 81
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 37, 147, 249
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 58
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 204, 218
MlyI GAGTC 1 cut(s) 203
MnlI CCTC 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 2 cut(s) 92, 255
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 134, 135
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 239
NciI CCSGG 2 cut(s) 134, 135
NcoI CCATGG 1 cut(s) 77
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 81
NsbI TGCGCA 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 43
PkrI GCNGC 2 cut(s) 140, 244
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 92, 255
SatI GCNGC 2 cut(s) 139, 243
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 2 cut(s) 134, 135
SetI ASST 5 cut(s) 61, 75, 152, 167, 235
SinI GGWCC 1 cut(s) 4
SmaI CCCGGG 1 cut(s) 135
SsiI CCGC 4 cut(s) 108, 138, 141, 222
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 132, 133
StyI CCWWGG 2 cut(s) 34, 77
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 180
TauI GCSGC 1 cut(s) 141
Tru1I TTAA 2 cut(s) 92, 255
Tru9I TTAA 2 cut(s) 92, 255
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 219
TspMI CCCGGG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 4
XmaI CCCGGG 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 1 cut(s) 234
ZraI GACGTC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.