RLG00000001254

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018129
Physical Location & Seq
Forward (+)
12955315 .. 12955985
671 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001254

Sequence Viewer

Length: 312 bp
ATGGACCAAGTTCCATCTCCTAAAAACACAAACCAAGGAATACTTTCTTGCTGGGGACGTCTAAAGTTCAAGCTTCCATGGACAAGCAGATTAAGACGATACACCACCACAAGGCAGAGAAGTATCGGAAACCCGGGTGGCGGGTTTAGGTATGATCCTCTGAGCTATGCGCAAAACTTCGACGATGGTTGGGACGAAACTGATGAAGACTCTTCTAAACGCGGGTTTTCAGCTAGATATGCTGCCCCTTCTTTTAAATCATCTGGAGACAATTGTGGGGCTCCTCTCCCAGAGTCCCCACCCATCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.52

Weight (kDa)

9.06

Isoelectric Point (pI)

62.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018129)

Species Orthologous Gene IDs
prunus_persica Prupe.1G539100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0233511
rosa_laevigata RLG00000001254
rosa_multiflora Rmu_sc0000029.1_g000013
rosa_roxburghii Rroxscaffold_3G00227240
rosa_samantha Rh7AG437400 Rh7BG409900 Rh7CG457000 Rh7DG426400
rosa_wichuraiana Rw0G008500 Rw7G036070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 61
Acc16I TGCGCA 1 cut(s) 171
AccII CGCG 1 cut(s) 222
AciI CCGC 2 cut(s) 141, 222
AclWI GGATC 1 cut(s) 149
AcyI GRCGYC 1 cut(s) 58
AfiI CCNNNNNNNGG 2 cut(s) 111, 140
AgsI TTSAA 1 cut(s) 70
AluBI AGCT 3 cut(s) 73, 165, 233
AluI AGCT 3 cut(s) 73, 165, 233
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 133
ApeKI GCWGC 1 cut(s) 242
Asp700I GAANNNNTTC 1 cut(s) 43
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 134, 135
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 229
BccI CCATC 3 cut(s) 22, 179, 311
BcnI CCSGG 2 cut(s) 134, 135
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 2 cut(s) 134, 135
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 2 cut(s) 134, 135
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 1 cut(s) 285
BpuMI CCSGG 2 cut(s) 134, 135
BsaHI GRCGYC 1 cut(s) 58
BsaJI CCNNGG 3 cut(s) 34, 77, 133
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 140
BseDI CCNNGG 3 cut(s) 34, 77, 133
BseLI CCNNNNNNNGG 2 cut(s) 111, 140
BseMII CTCAG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 273
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 51
Bsh1236I CGCG 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 1 cut(s) 134
BslFI GGGAC 3 cut(s) 69, 206, 280
BslI CCNNNNNNNGG 2 cut(s) 111, 140
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 3 cut(s) 69, 206, 280
BsoBI CYCGRG 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 283
Bsp143I GATC 1 cut(s) 154
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 2 cut(s) 141, 222
BspCNI CTCAG 1 cut(s) 153
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 282
BspPI GGATC 1 cut(s) 149
BssECI CCNNGG 3 cut(s) 34, 77, 133
BssMI GATC 1 cut(s) 154
BssNI GRCGYC 1 cut(s) 58
BssT1I CCWWGG 2 cut(s) 34, 77
Bst6I CTCTTC 1 cut(s) 217
BstACI GRCGYC 1 cut(s) 58
BstDEI CTNAG 1 cut(s) 161
BstDSI CCRYGG 1 cut(s) 77
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstSCI CCNGG 2 cut(s) 132, 133
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 77
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 4
Cfr9I CCCGGG 1 cut(s) 133
CviAII CATG 1 cut(s) 78
CviJI RGCY 4 cut(s) 73, 165, 233, 281
CviKI_1 RGCY 4 cut(s) 73, 165, 233, 281
DdeI CTNAG 1 cut(s) 161
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
DraI TTTAAA 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 34, 77
Eco24I GRGCYC 1 cut(s) 283
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 133
EcoT14I CCWWGG 2 cut(s) 34, 77
EcoT38I GRGCYC 1 cut(s) 283
ErhI CCWWGG 2 cut(s) 34, 77
FaeI CATG 1 cut(s) 81
FaiI YATR 6 cut(s) 79, 153, 168, 240, 308, 310
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 3 cut(s) 69, 206, 280
FatI CATG 1 cut(s) 77
FauI CCCGC 2 cut(s) 134, 215
Fnu4HI GCNGC 1 cut(s) 243
FriOI GRGCYC 1 cut(s) 283
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 234
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 285
HapII CCGG 1 cut(s) 134
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 58
Hin1II CATG 1 cut(s) 81
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 209, 293
HpaII CCGG 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 128, 162
Hpy188III TCNNGA 1 cut(s) 264
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 258
HpyCH4IV ACGT 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 58
Hsp92II CATG 1 cut(s) 81
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 4 cut(s) 37, 147, 249, 303
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 58
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 204, 218
MfeI CAATTG 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 283
MluCI AATT 1 cut(s) 271
MlyI GAGTC 2 cut(s) 203, 302
MnlI CCTC 2 cut(s) 168, 294
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 2 cut(s) 92, 255
MspI CCGG 1 cut(s) 134
MspR9I CCNGG 2 cut(s) 134, 135
MunI CAATTG 1 cut(s) 271
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 239
NciI CCSGG 2 cut(s) 134, 135
NcoI CCATGG 1 cut(s) 77
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 81
NlaIV GGNNCC 1 cut(s) 282
NsbI TGCGCA 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 2 cut(s) 203, 301
PpsI GAGTC 2 cut(s) 203, 301
PspFI CCCAGC 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 92, 255
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 1 cut(s) 154
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 203, 302
ScrFI CCNGG 2 cut(s) 134, 135
SduI GDGCHC 1 cut(s) 283
SetI ASST 5 cut(s) 61, 75, 152, 167, 235
SinI GGWCC 1 cut(s) 4
SmaI CCCGGG 1 cut(s) 135
Sse9I AATT 1 cut(s) 271
SsiI CCGC 2 cut(s) 141, 222
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 132, 133
StyI CCWWGG 2 cut(s) 34, 77
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 180
TasI AATT 1 cut(s) 271
Tru1I TTAA 2 cut(s) 92, 255
Tru9I TTAA 2 cut(s) 92, 255
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 219
TspMI CCCGGG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 4
XmaI CCCGGG 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 1 cut(s) 234
ZraI GACGTC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.