Rmu_sc0000029.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000029.1
OG0018129
Physical Location & Seq
Forward (+)
90683 .. 92202
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000029.1_g000013.1.cds

Sequence Viewer

Length: 588 bp
atggaccaagttccatcccctaaaaacacaaaccaaggaatactttcttgctggggacgtctaaagttcaagcttccatggacaagcagattaagacgatacaccaccgcaaggcagagaagtatcggaaacctgggcggcgggtttaggtatgatcctctgagctatgcgcaaaacttcgacgatggttgggacgaaactgatgaagactcttctaaacgcgggttttcagctagatatgctgccccttcttttaaatcatctggagacaaagcaagctcaacggtgtatgttttgatcgctgtccaacagggttgggtgaccatctcagcaaaaatgaaactattccaccatctacccggcaaaacagaagctggtatcctcttgacccaggtcatgggctgggtcaggatattgacccgggagactggctgctacgctggccagaagcaaattgtgggtgacgtcaggacgctgctccagcttgtgtcgcatagttatggggagagagcagcttgtcgccaccaatatgtgcggagcaaattgaagataaattttcttcacttcgtgcaaacttcgcgtgcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

22.02

Weight (kDa)

10.01

Isoelectric Point (pI)

41.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018129)

Species Orthologous Gene IDs
prunus_persica Prupe.1G539100_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0233511
rosa_laevigata RLG00000001254
rosa_multiflora Rmu_sc0000029.1_g000013
rosa_roxburghii Rroxscaffold_3G00227240
rosa_samantha Rh7AG437400 Rh7BG409900 Rh7CG457000 Rh7DG426400
rosa_wichuraiana Rw0G008500 Rw7G036070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 61, 468
Acc16I TGCGCA 1 cut(s) 171
AccB7I CCANNNNNTGG 1 cut(s) 397
AccII CGCG 2 cut(s) 222, 580
AciI CCGC 5 cut(s) 108, 138, 141, 222, 535
AclWI GGATC 1 cut(s) 149
AcoI YGGCCR 1 cut(s) 442
AcsI RAATTY 1 cut(s) 553
AcyI GRCGYC 2 cut(s) 58, 465
AdeI CACNNNGTG 1 cut(s) 568
AfiI CCNNNNNNNGG 2 cut(s) 111, 397
AgsI TTSAA 2 cut(s) 70, 547
AjnI CCWGG 2 cut(s) 132, 390
AluBI AGCT 7 cut(s) 73, 165, 233, 279, 374, 484, 515
AluI AGCT 7 cut(s) 73, 165, 233, 279, 374, 484, 515
Alw26I GTCTC 2 cut(s) 261, 419
AlwI GGATC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 420
AoxI GGCC 1 cut(s) 442
ApeKI GCWGC 4 cut(s) 242, 432, 475, 512
ApoI RAATTY 1 cut(s) 553
Asp700I GAANNNNTTC 2 cut(s) 43, 344
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 3 cut(s) 360, 421, 422
AsuHPI GGTGA 2 cut(s) 331, 473
AvaI CYCGRG 1 cut(s) 420
AvaII GGWCC 1 cut(s) 4
BalI TGGCCA 1 cut(s) 444
BbsI GAAGAC 1 cut(s) 213
BbvI GCAGC 4 cut(s) 229, 419, 462, 524
BccI CCATC 4 cut(s) 22, 179, 332, 360
BciT130I CCWGG 2 cut(s) 134, 392
BciVI GTATCC 1 cut(s) 389
BcnI CCSGG 3 cut(s) 360, 421, 422
BcoDI GTCTC 2 cut(s) 261, 419
BfaI CTAG 1 cut(s) 234
BfuI GTATCC 1 cut(s) 389
BisI GCNGC 5 cut(s) 139, 243, 433, 476, 513
BlsI GCNGC 5 cut(s) 140, 244, 434, 477, 514
Bme1390I CCNGG 5 cut(s) 134, 360, 392, 421, 422
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 5 cut(s) 134, 360, 392, 421, 422
BoxI GACNNNNGTC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 213
BpmI CTGGAG 2 cut(s) 285, 464
BpuMI CCSGG 3 cut(s) 360, 421, 422
BsaHI GRCGYC 2 cut(s) 58, 465
BsaJI CCNNGG 5 cut(s) 34, 77, 133, 390, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 397
Bse1I ACTGG 1 cut(s) 433
BseBI CCWGG 2 cut(s) 134, 392
BseDI CCNNGG 5 cut(s) 34, 77, 133, 390, 420
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 2 cut(s) 111, 397
BseMII CTCAG 2 cut(s) 152, 342
BseNI ACTGG 1 cut(s) 433
BseXI GCAGC 4 cut(s) 229, 419, 462, 524
BseYI CCCAGC 2 cut(s) 51, 402
Bsh1236I CGCG 2 cut(s) 222, 580
BshFI GGCC 1 cut(s) 444
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 2 cut(s) 360, 421
BslFI GGGAC 2 cut(s) 69, 206
BslI CCNNNNNNNGG 2 cut(s) 111, 397
BsmAI GTCTC 2 cut(s) 261, 419
BsmFI GGGAC 2 cut(s) 69, 206
BsnI GGCC 1 cut(s) 444
BsoBI CYCGRG 1 cut(s) 420
Bsp143I GATC 2 cut(s) 154, 297
Bsp19I CCATGG 1 cut(s) 77
BspACI CCGC 5 cut(s) 108, 138, 141, 222, 535
BspANI GGCC 1 cut(s) 444
BspCNI CTCAG 2 cut(s) 153, 341
BspFNI CGCG 2 cut(s) 222, 580
BspPI GGATC 1 cut(s) 149
BsrI ACTGG 1 cut(s) 433
BssECI CCNNGG 5 cut(s) 34, 77, 133, 390, 420
BssMI GATC 2 cut(s) 154, 297
BssNI GRCGYC 2 cut(s) 58, 465
BssT1I CCWWGG 2 cut(s) 34, 77
Bst2UI CCWGG 2 cut(s) 134, 392
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 217
BstACI GRCGYC 2 cut(s) 58, 465
BstC8I GCNNGC 3 cut(s) 277, 442, 582
BstDEI CTNAG 2 cut(s) 161, 328
BstDSI CCRYGG 1 cut(s) 77
BstEII GGTNACC 1 cut(s) 319
BstF5I GGATG 1 cut(s) 14
BstFNI CGCG 2 cut(s) 222, 580
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 2 cut(s) 157, 300
BstMAI GTCTC 2 cut(s) 261, 419
BstMBI GATC 2 cut(s) 154, 297
BstMWI GCNNNNNNNGC 5 cut(s) 239, 441, 481, 490, 577
BstNI CCWGG 2 cut(s) 134, 392
BstPAI GACNNNNGTC 1 cut(s) 392
BstPI GGTNACC 1 cut(s) 319
BstSCI CCNGG 5 cut(s) 132, 358, 390, 419, 420
BstUI CGCG 2 cut(s) 222, 580
BstV1I GCAGC 4 cut(s) 229, 419, 462, 524
BstV2I GAAGAC 1 cut(s) 213
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 1 cut(s) 444
BtgI CCRYGG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 14
Cac8I GCNNGC 3 cut(s) 277, 442, 582
CaiI CAGNNNCTG 1 cut(s) 374
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 4
Cfr9I CCCGGG 1 cut(s) 420
CseI GACGC 1 cut(s) 481
CviAII CATG 2 cut(s) 78, 397
DdeI CTNAG 2 cut(s) 161, 328
DpnI GATC 2 cut(s) 156, 299
DpnII GATC 2 cut(s) 154, 297
DraI TTTAAA 1 cut(s) 256
DraIII CACNNNGTG 1 cut(s) 568
EaeI YGGCCR 1 cut(s) 442
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 34, 77
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 420
Eco91I GGTNACC 1 cut(s) 319
EcoO65I GGTNACC 1 cut(s) 319
EcoRII CCWGG 2 cut(s) 132, 390
EcoT14I CCWWGG 2 cut(s) 34, 77
ErhI CCWWGG 2 cut(s) 34, 77
FaeI CATG 2 cut(s) 81, 400
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 2 cut(s) 69, 206
FatI CATG 2 cut(s) 77, 396
FauI CCCGC 2 cut(s) 134, 215
Fnu4HI GCNGC 5 cut(s) 139, 243, 433, 476, 513
Fsp4HI GCNGC 5 cut(s) 139, 243, 433, 476, 513
FspBI CTAG 1 cut(s) 234
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 1 cut(s) 171
GluI GCNGC 5 cut(s) 139, 243, 433, 476, 513
GsaI CCCAGC 2 cut(s) 55, 406
GsuI CTGGAG 2 cut(s) 285, 464
HaeIII GGCC 1 cut(s) 444
HapII CCGG 2 cut(s) 360, 421
HgaI GACGC 1 cut(s) 481
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 2 cut(s) 58, 465
Hin1II CATG 2 cut(s) 81, 400
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 1 cut(s) 209
HpaII CCGG 2 cut(s) 360, 421
HphI GGTGA 2 cut(s) 331, 473
Hpy188I TCNGA 2 cut(s) 128, 162
Hpy188III TCNNGA 4 cut(s) 264, 385, 409, 469
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 258
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 2 cut(s) 58, 465
HpyCH4V TGCA 2 cut(s) 571, 584
HpyF10VI GCNNNNNNNGC 5 cut(s) 239, 441, 481, 490, 577
HpyF3I CTNAG 2 cut(s) 161, 328
HpySE526I ACGT 2 cut(s) 58, 465
Hsp92I GRCGYC 2 cut(s) 58, 465
Hsp92II CATG 2 cut(s) 81, 400
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 2 cut(s) 154, 297
LmnI GCTCC 2 cut(s) 483, 537
Lsp1109I GCAGC 4 cut(s) 229, 419, 462, 524
MaeI CTAG 1 cut(s) 234
MaeII ACGT 2 cut(s) 58, 465
MaeIII GTNAC 2 cut(s) 319, 461
MalI GATC 2 cut(s) 156, 299
MboI GATC 2 cut(s) 154, 297
MboII GAAGA 4 cut(s) 204, 218, 551, 559
MlsI TGGCCA 1 cut(s) 444
MluCI AATT 3 cut(s) 453, 542, 553
MluNI TGGCCA 1 cut(s) 444
MlyI GAGTC 1 cut(s) 203
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 2 cut(s) 168, 392
Mox20I TGGCCA 1 cut(s) 444
MroXI GAANNNNTTC 2 cut(s) 43, 344
MscI TGGCCA 1 cut(s) 444
MseI TTAA 2 cut(s) 92, 255
MslI CAYNNNNRTG 2 cut(s) 498, 528
Msp20I TGGCCA 1 cut(s) 444
MspI CCGG 2 cut(s) 360, 421
MspR9I CCNGG 5 cut(s) 134, 360, 392, 421, 422
MvaI CCWGG 2 cut(s) 134, 392
MvnI CGCG 2 cut(s) 222, 580
MwoI GCNNNNNNNGC 5 cut(s) 239, 441, 481, 490, 577
NciI CCSGG 3 cut(s) 360, 421, 422
NcoI CCATGG 1 cut(s) 77
NdeII GATC 2 cut(s) 154, 297
NlaIII CATG 2 cut(s) 81, 400
NmuCI GTSAC 2 cut(s) 319, 461
NsbI TGCGCA 1 cut(s) 171
PdmI GAANNNNTTC 2 cut(s) 43, 344
PflMI CCANNNNNTGG 1 cut(s) 397
PkrI GCNGC 5 cut(s) 140, 244, 434, 477, 514
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PshAI GACNNNNGTC 1 cut(s) 392
Psp6I CCWGG 2 cut(s) 132, 390
PspEI GGTNACC 1 cut(s) 319
PspFI CCCAGC 2 cut(s) 51, 402
PspGI CCWGG 2 cut(s) 132, 390
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 374
RseI CAYNNNNRTG 2 cut(s) 498, 528
SaqAI TTAA 2 cut(s) 92, 255
SatI GCNGC 5 cut(s) 139, 243, 433, 476, 513
Sau3AI GATC 2 cut(s) 154, 297
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 203
ScrFI CCNGG 5 cut(s) 134, 360, 392, 421, 422
SinI GGWCC 1 cut(s) 4
SmaI CCCGGG 1 cut(s) 422
SmiMI CAYNNNNRTG 2 cut(s) 498, 528
Sse9I AATT 3 cut(s) 453, 542, 553
SsiI CCGC 5 cut(s) 108, 138, 141, 222, 535
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 5 cut(s) 132, 358, 390, 419, 420
StyI CCWWGG 2 cut(s) 34, 77
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 2 cut(s) 61, 468
TaqI TCGA 1 cut(s) 180
TasI AATT 3 cut(s) 453, 542, 553
TauI GCSGC 1 cut(s) 141
Tru1I TTAA 2 cut(s) 92, 255
Tru9I TTAA 2 cut(s) 92, 255
TseFI GTSAC 2 cut(s) 319, 461
TseI GCWGC 4 cut(s) 242, 432, 475, 512
Tsp45I GTSAC 2 cut(s) 319, 461
TspDTI ATGAA 2 cut(s) 219, 353
TspMI CCCGGG 1 cut(s) 420
Van91I CCANNNNNTGG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 553
XmaI CCCGGG 1 cut(s) 420
XmnI GAANNNNTTC 2 cut(s) 43, 344
XspI CTAG 1 cut(s) 234
ZraI GACGTC 2 cut(s) 59, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.