Regulator of nonsense transcripts
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD08G1243800.v1.1 MD15G1438000.v1.1 |
| prunus_persica | Prupe.1G581100_v2.0.a1 Prupe.1G581100_v2.0.a1 Prupe.1G581100_v2.0.a1 Prupe.1G581100_v2.0.a1 Prupe.1G581100_v2.0.a1 Prupe.1G581100_v2.0.a1 |
| pyrus_communis | pycom08g21150 pycom15g38610 |
| rosa_rugosa | Rorug07G0194200 |
| rosa_samantha | Rh7AG335300 Rh7CG353000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 962, 1122 |
| AarI | CACCTGC | 1 cut(s) | 1367 |
| Acc16I | TGCGCA | 1 cut(s) | 1023 |
| Acc36I | ACCTGC | 3 cut(s) | 942, 1285, 1367 |
| Acc65I | GGTACC | 1 cut(s) | 700 |
| AccB1I | GGYRCC | 2 cut(s) | 446, 700 |
| AccII | CGCG | 2 cut(s) | 294, 711 |
| AciI | CCGC | 3 cut(s) | 50, 106, 407 |
| AclWI | GGATC | 5 cut(s) | 27, 341, 526, 1243, 1362 |
| AcoI | YGGCCR | 1 cut(s) | 103 |
| AcsI | RAATTY | 4 cut(s) | 215, 371, 625, 1042 |
| AcuI | CTGAAG | 1 cut(s) | 1284 |
| AcvI | CACGTG | 1 cut(s) | 1081 |
| AdeI | CACNNNGTG | 1 cut(s) | 1346 |
| AfaI | GTAC | 2 cut(s) | 702, 913 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1376 |
| AflIII | ACRYGT | 3 cut(s) | 292, 870, 1078 |
| AgeI | ACCGGT | 1 cut(s) | 1369 |
| AgsI | TTSAA | 5 cut(s) | 7, 184, 371, 1274, 1395 |
| AjiI | CACGTC | 1 cut(s) | 992 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 31 |
| AluBI | AGCT | 2 cut(s) | 560, 758 |
| AluI | AGCT | 2 cut(s) | 560, 758 |
| Alw26I | GTCTC | 1 cut(s) | 1186 |
| AlwI | GGATC | 5 cut(s) | 27, 341, 526, 1243, 1362 |
| Ama87I | CYCGRG | 2 cut(s) | 131, 350 |
| AoxI | GGCC | 2 cut(s) | 103, 188 |
| ApeKI | GCWGC | 3 cut(s) | 755, 880, 1308 |
| ApoI | RAATTY | 4 cut(s) | 215, 371, 625, 1042 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 293, 325 |
| AseI | ATTAAT | 1 cut(s) | 479 |
| AsiGI | ACCGGT | 1 cut(s) | 1369 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1390 |
| Asp718I | GGTACC | 1 cut(s) | 700 |
| AspLEI | GCGC | 5 cut(s) | 711, 922, 939, 1024, 1112 |
| AspS9I | GGNCC | 3 cut(s) | 10, 566, 1071 |
| AsuC2I | CCSGG | 2 cut(s) | 132, 133 |
| AsuHPI | GGTGA | 2 cut(s) | 1359, 1391 |
| AsuII | TTCGAA | 1 cut(s) | 1040 |
| AvaI | CYCGRG | 2 cut(s) | 131, 350 |
| AvaII | GGWCC | 3 cut(s) | 10, 566, 1071 |
| BanI | GGYRCC | 2 cut(s) | 446, 700 |
| BauI | CACGAG | 1 cut(s) | 595 |
| BbrPI | CACGTG | 1 cut(s) | 1081 |
| BbsI | GAAGAC | 1 cut(s) | 996 |
| BbvI | GCAGC | 3 cut(s) | 767, 892, 1295 |
| BccI | CCATC | 5 cut(s) | 218, 314, 577, 1226, 1355 |
| BceAI | ACGGC | 2 cut(s) | 56, 924 |
| BciVI | GTATCC | 1 cut(s) | 1093 |
| BclI | TGATCA | 1 cut(s) | 715 |
| BcnI | CCSGG | 2 cut(s) | 132, 133 |
| BcoDI | GTCTC | 1 cut(s) | 1186 |
| BfaI | CTAG | 4 cut(s) | 165, 402, 576, 1292 |
| BfmI | CTRYAG | 1 cut(s) | 753 |
| BfoI | RGCGCY | 1 cut(s) | 1113 |
| BfuAI | ACCTGC | 3 cut(s) | 942, 1285, 1367 |
| BfuI | GTATCC | 1 cut(s) | 1093 |
| BisI | GCNGC | 5 cut(s) | 50, 106, 756, 881, 1309 |
| BlsI | GCNGC | 5 cut(s) | 51, 107, 757, 882, 1310 |
| Bme1390I | CCNGG | 2 cut(s) | 132, 133 |
| Bme18I | GGWCC | 3 cut(s) | 10, 566, 1071 |
| BmeT110I | CYCGRG | 2 cut(s) | 131, 350 |
| BmgBI | CACGTC | 1 cut(s) | 992 |
| BmgT120I | GGNCC | 3 cut(s) | 10, 566, 1071 |
| BmiI | GGNNCC | 5 cut(s) | 334, 448, 702, 1073, 1411 |
| BmrFI | CCNGG | 2 cut(s) | 132, 133 |
| BmrI | ACTGGG | 1 cut(s) | 124 |
| BmsI | GCATC | 5 cut(s) | 448, 643, 758, 793, 976 |
| BmuI | ACTGGG | 1 cut(s) | 124 |
| BpiI | GAAGAC | 1 cut(s) | 996 |
| BpmI | CTGGAG | 2 cut(s) | 380, 1098 |
| Bpu14I | TTCGAA | 1 cut(s) | 1040 |
| BpuMI | CCSGG | 2 cut(s) | 132, 133 |
| BsaAI | YACGTR | 1 cut(s) | 1081 |
| BsaBI | GATNNNNATC | 1 cut(s) | 228 |
| BsaI | GGTCTC | 1 cut(s) | 1186 |
| BsaJI | CCNNGG | 5 cut(s) | 27, 131, 510, 1067, 1330 |
| BsaWI | WCCGGW | 1 cut(s) | 1369 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1376 |
| Bse118I | RCCGGY | 1 cut(s) | 1369 |
| Bse1I | ACTGG | 3 cut(s) | 13, 119, 669 |
| Bse8I | GATNNNNATC | 1 cut(s) | 228 |
| BseDI | CCNNGG | 5 cut(s) | 27, 131, 510, 1067, 1330 |
| BseGI | GGATG | 5 cut(s) | 202, 325, 463, 658, 991 |
| BseJI | GATNNNNATC | 1 cut(s) | 228 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1376 |
| BseMII | CTCAG | 2 cut(s) | 381, 603 |
| BseNI | ACTGG | 3 cut(s) | 13, 119, 669 |
| BseRI | GAGGAG | 3 cut(s) | 794, 1056, 1206 |
| BseXI | GCAGC | 3 cut(s) | 767, 892, 1295 |
| Bsh1236I | CGCG | 2 cut(s) | 294, 711 |
| BshFI | GGCC | 2 cut(s) | 105, 190 |
| BshNI | GGYRCC | 2 cut(s) | 446, 700 |
| BshTI | ACCGGT | 1 cut(s) | 1369 |
| BsiHKCI | CYCGRG | 2 cut(s) | 131, 350 |
| BsiSI | CCGG | 4 cut(s) | 132, 450, 863, 1370 |
| BslFI | GGGAC | 3 cut(s) | 114, 1057, 1067 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1376 |
| BsmAI | GTCTC | 1 cut(s) | 1186 |
| BsmFI | GGGAC | 3 cut(s) | 114, 1057, 1067 |
| BsnI | GGCC | 2 cut(s) | 105, 190 |
| Bso31I | GGTCTC | 1 cut(s) | 1186 |
| BsoBI | CYCGRG | 2 cut(s) | 131, 350 |
| Bsp119I | TTCGAA | 1 cut(s) | 1040 |
| Bsp143I | GATC | 7 cut(s) | 19, 346, 518, 715, 1198, 1235, 1354 |
| BspACI | CCGC | 3 cut(s) | 50, 106, 407 |
| BspANI | GGCC | 2 cut(s) | 105, 190 |
| BspCNI | CTCAG | 2 cut(s) | 382, 604 |
| BspFNI | CGCG | 2 cut(s) | 294, 711 |
| BspLI | GGNNCC | 5 cut(s) | 334, 448, 702, 1073, 1411 |
| BspMAI | CTGCAG | 1 cut(s) | 757 |
| BspMI | ACCTGC | 3 cut(s) | 942, 1285, 1367 |
| BspPI | GGATC | 5 cut(s) | 27, 341, 526, 1243, 1362 |
| BspQI | GCTCTTC | 1 cut(s) | 550 |
| BspT104I | TTCGAA | 1 cut(s) | 1040 |
| BspT107I | GGYRCC | 2 cut(s) | 446, 700 |
| BspTNI | GGTCTC | 1 cut(s) | 1186 |
| BsrFI | RCCGGY | 1 cut(s) | 1369 |
| BsrI | ACTGG | 3 cut(s) | 13, 119, 669 |
| BssAI | RCCGGY | 1 cut(s) | 1369 |
| BssECI | CCNNGG | 5 cut(s) | 27, 131, 510, 1067, 1330 |
| BssMI | GATC | 7 cut(s) | 19, 346, 518, 715, 1198, 1235, 1354 |
| BssSI | CACGAG | 1 cut(s) | 595 |
| BssT1I | CCWWGG | 2 cut(s) | 27, 510 |
| Bst2BI | CACGAG | 1 cut(s) | 595 |
| Bst4CI | ACNGT | 1 cut(s) | 306 |
| Bst6I | CTCTTC | 5 cut(s) | 131, 179, 421, 550, 771 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 386 |
| BstBAI | YACGTR | 1 cut(s) | 1081 |
| BstBI | TTCGAA | 1 cut(s) | 1040 |
| BstC8I | GCNNGC | 1 cut(s) | 387 |
| BstDEI | CTNAG | 3 cut(s) | 312, 390, 612 |
| BstF5I | GGATG | 5 cut(s) | 202, 325, 463, 658, 991 |
| BstFNI | CGCG | 2 cut(s) | 294, 711 |
| BstH2I | RGCGCY | 1 cut(s) | 1113 |
| BstHHI | GCGC | 5 cut(s) | 711, 922, 939, 1024, 1112 |
| BstKTI | GATC | 7 cut(s) | 22, 349, 521, 718, 1201, 1238, 1357 |
| BstMAI | GTCTC | 1 cut(s) | 1186 |
| BstMBI | GATC | 7 cut(s) | 19, 346, 518, 715, 1198, 1235, 1354 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 49, 386, 512, 755 |
| BstNSI | RCATGY | 1 cut(s) | 874 |
| BstSCI | CCNGG | 2 cut(s) | 130, 131 |
| BstSFI | CTRYAG | 1 cut(s) | 753 |
| BstUI | CGCG | 2 cut(s) | 294, 711 |
| BstV1I | GCAGC | 3 cut(s) | 767, 892, 1295 |
| BstV2I | GAAGAC | 1 cut(s) | 996 |
| BstX2I | RGATCY | 3 cut(s) | 346, 518, 1354 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 306 |
| BstYI | RGATCY | 3 cut(s) | 346, 518, 1354 |
| BsuI | GTATCC | 1 cut(s) | 1093 |
| BsuRI | GGCC | 2 cut(s) | 105, 190 |
| BtgZI | GCGATG | 1 cut(s) | 726 |
| BtrI | CACGTC | 1 cut(s) | 992 |
| BtsCI | GGATG | 5 cut(s) | 202, 325, 463, 658, 991 |
| BtsI | GCAGTG | 1 cut(s) | 1286 |
| BtsIMutI | CAGTG | 3 cut(s) | 311, 676, 1286 |
| BveI | ACCTGC | 3 cut(s) | 942, 1285, 1367 |
| Cac8I | GCNNGC | 1 cut(s) | 387 |
| CfoI | GCGC | 5 cut(s) | 711, 922, 939, 1024, 1112 |
| Cfr10I | RCCGGY | 1 cut(s) | 1369 |
| Cfr13I | GGNCC | 3 cut(s) | 10, 566, 1071 |
| Cfr9I | CCCGGG | 1 cut(s) | 131 |
| Csp6I | GTAC | 2 cut(s) | 701, 912 |
| CspAI | ACCGGT | 1 cut(s) | 1369 |
| CviAII | CATG | 7 cut(s) | 857, 871, 904, 1145, 1322, 1343, 1415 |
| CviQI | GTAC | 2 cut(s) | 701, 912 |
| DdeI | CTNAG | 3 cut(s) | 312, 390, 612 |
| DpnI | GATC | 7 cut(s) | 21, 348, 520, 717, 1200, 1237, 1356 |
| DpnII | GATC | 7 cut(s) | 19, 346, 518, 715, 1198, 1235, 1354 |
| DraI | TTTAAA | 2 cut(s) | 262, 1095 |
| DraIII | CACNNNGTG | 1 cut(s) | 1346 |
| EaeI | YGGCCR | 1 cut(s) | 103 |
| Eam1104I | CTCTTC | 5 cut(s) | 131, 179, 421, 550, 771 |
| EarI | CTCTTC | 5 cut(s) | 131, 179, 421, 550, 771 |
| Eco130I | CCWWGG | 2 cut(s) | 27, 510 |
| Eco31I | GGTCTC | 1 cut(s) | 1186 |
| Eco47I | GGWCC | 3 cut(s) | 10, 566, 1071 |
| Eco57I | CTGAAG | 1 cut(s) | 1284 |
| Eco72I | CACGTG | 1 cut(s) | 1081 |
| Eco88I | CYCGRG | 2 cut(s) | 131, 350 |
| EcoRI | GAATTC | 2 cut(s) | 215, 1042 |
| EcoT14I | CCWWGG | 2 cut(s) | 27, 510 |
| ErhI | CCWWGG | 2 cut(s) | 27, 510 |
| FaeI | CATG | 7 cut(s) | 860, 874, 907, 1148, 1325, 1346, 1418 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 988, 1020 |
| FaqI | GGGAC | 3 cut(s) | 114, 1057, 1067 |
| FatI | CATG | 7 cut(s) | 856, 870, 903, 1144, 1321, 1342, 1414 |
| FbaI | TGATCA | 1 cut(s) | 715 |
| Fnu4HI | GCNGC | 5 cut(s) | 50, 106, 756, 881, 1309 |
| FokI | GGATG | 5 cut(s) | 209, 332, 470, 665, 998 |
| Fsp4HI | GCNGC | 5 cut(s) | 50, 106, 756, 881, 1309 |
| FspBI | CTAG | 4 cut(s) | 165, 402, 576, 1292 |
| FspI | TGCGCA | 1 cut(s) | 1023 |
| GlaI | GCGC | 5 cut(s) | 710, 921, 938, 1023, 1111 |
| GluI | GCNGC | 5 cut(s) | 50, 106, 756, 881, 1309 |
| GsuI | CTGGAG | 2 cut(s) | 380, 1098 |
| HaeII | RGCGCY | 1 cut(s) | 1113 |
| HaeIII | GGCC | 2 cut(s) | 105, 190 |
| HapII | CCGG | 4 cut(s) | 132, 450, 863, 1370 |
| HhaI | GCGC | 5 cut(s) | 711, 922, 939, 1024, 1112 |
| Hin1II | CATG | 7 cut(s) | 860, 874, 907, 1148, 1325, 1346, 1418 |
| Hin6I | GCGC | 5 cut(s) | 709, 920, 937, 1022, 1110 |
| HinP1I | GCGC | 5 cut(s) | 709, 920, 937, 1022, 1110 |
| HincII | GTYRAC | 1 cut(s) | 687 |
| HindII | GTYRAC | 1 cut(s) | 687 |
| HinfI | GANTC | 5 cut(s) | 151, 394, 1213, 1253, 1295 |
| HpaII | CCGG | 4 cut(s) | 132, 450, 863, 1370 |
| HphI | GGTGA | 2 cut(s) | 1359, 1391 |
| Hpy166II | GTNNAC | 2 cut(s) | 566, 687 |
| Hpy188I | TCNGA | 9 cut(s) | 344, 498, 525, 613, 730, 831, 1048, 1303, 1437 |
| Hpy8I | GTNNAC | 2 cut(s) | 566, 687 |
| Hpy99I | CGWCG | 1 cut(s) | 92 |
| HpyAV | CCTTC | 8 cut(s) | 63, 241, 294, 310, 323, 735, 1298, 1376 |
| HpyCH4III | ACNGT | 1 cut(s) | 306 |
| HpyCH4IV | ACGT | 4 cut(s) | 90, 768, 991, 1080 |
| HpyCH4V | TGCA | 8 cut(s) | 380, 755, 989, 1084, 1144, 1244, 1268, 1376 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 49, 386, 512, 755 |
| HpyF3I | CTNAG | 3 cut(s) | 312, 390, 612 |
| HpySE526I | ACGT | 4 cut(s) | 90, 768, 991, 1080 |
| Hsp92II | CATG | 7 cut(s) | 860, 874, 907, 1148, 1325, 1346, 1418 |
| HspAI | GCGC | 5 cut(s) | 709, 920, 937, 1022, 1110 |
| KpnI | GGTACC | 1 cut(s) | 704 |
| Ksp22I | TGATCA | 1 cut(s) | 715 |
| Kzo9I | GATC | 7 cut(s) | 19, 346, 518, 715, 1198, 1235, 1354 |
| LguI | GCTCTTC | 1 cut(s) | 550 |
| LmnI | GCTCC | 4 cut(s) | 286, 466, 1117, 1415 |
| Lsp1109I | GCAGC | 3 cut(s) | 767, 892, 1295 |
| LweI | GCATC | 5 cut(s) | 448, 643, 758, 793, 976 |
| MaeI | CTAG | 4 cut(s) | 165, 402, 576, 1292 |
| MaeII | ACGT | 4 cut(s) | 90, 768, 991, 1080 |
| MaeIII | GTNAC | 3 cut(s) | 469, 739, 873 |
| MalI | GATC | 7 cut(s) | 21, 348, 520, 717, 1200, 1237, 1356 |
| MboI | GATC | 7 cut(s) | 19, 346, 518, 715, 1198, 1235, 1354 |
| MboII | GAAGA | 8 cut(s) | 148, 196, 389, 438, 567, 788, 996, 1290 |
| MfeI | CAATTG | 3 cut(s) | 416, 915, 1085 |
| MflI | RGATCY | 3 cut(s) | 346, 518, 1354 |
| MluCI | AATT | 8 cut(s) | 215, 257, 371, 416, 625, 915, 1042, 1085 |
| MluI | ACGCGT | 1 cut(s) | 292 |
| MlyI | GAGTC | 2 cut(s) | 1207, 1262 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1390 |
| MseI | TTAA | 6 cut(s) | 240, 261, 479, 1094, 1350, 1456 |
| MspA1I | CMGCKG | 1 cut(s) | 758 |
| MspI | CCGG | 4 cut(s) | 132, 450, 863, 1370 |
| MspR9I | CCNGG | 2 cut(s) | 132, 133 |
| MunI | CAATTG | 3 cut(s) | 416, 915, 1085 |
| MvnI | CGCG | 2 cut(s) | 294, 711 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 49, 386, 512, 755 |
| NciI | CCSGG | 2 cut(s) | 132, 133 |
| NdeII | GATC | 7 cut(s) | 19, 346, 518, 715, 1198, 1235, 1354 |
| NlaIII | CATG | 7 cut(s) | 860, 874, 907, 1148, 1325, 1346, 1418 |
| NlaIV | GGNNCC | 5 cut(s) | 334, 448, 702, 1073, 1411 |
| NmeAIII | GCCGAG | 1 cut(s) | 1355 |
| NmuCI | GTSAC | 2 cut(s) | 739, 873 |
| NsbI | TGCGCA | 1 cut(s) | 1023 |
| NspI | RCATGY | 1 cut(s) | 874 |
| NspV | TTCGAA | 1 cut(s) | 1040 |
| PaqCI | CACCTGC | 1 cut(s) | 1367 |
| PciI | ACATGT | 1 cut(s) | 870 |
| PciSI | GCTCTTC | 1 cut(s) | 550 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1390 |
| PfeI | GAWTC | 3 cut(s) | 151, 394, 1295 |
| PinAI | ACCGGT | 1 cut(s) | 1369 |
| PkrI | GCNGC | 5 cut(s) | 51, 107, 757, 882, 1310 |
| PleI | GAGTC | 2 cut(s) | 1207, 1261 |
| PmaCI | CACGTG | 1 cut(s) | 1081 |
| PmlI | CACGTG | 1 cut(s) | 1081 |
| PpsI | GAGTC | 2 cut(s) | 1207, 1261 |
| Ppu21I | YACGTR | 1 cut(s) | 1081 |
| PscI | ACATGT | 1 cut(s) | 870 |
| PshBI | ATTAAT | 1 cut(s) | 479 |
| PsiI | TTATAA | 2 cut(s) | 962, 1122 |
| PspCI | CACGTG | 1 cut(s) | 1081 |
| PspN4I | GGNNCC | 5 cut(s) | 334, 448, 702, 1073, 1411 |
| PspPI | GGNCC | 3 cut(s) | 10, 566, 1071 |
| PstI | CTGCAG | 1 cut(s) | 757 |
| PsuI | RGATCY | 3 cut(s) | 346, 518, 1354 |
| PvuII | CAGCTG | 1 cut(s) | 758 |
| RsaI | GTAC | 2 cut(s) | 702, 913 |
| RsaNI | GTAC | 2 cut(s) | 701, 912 |
| SapI | GCTCTTC | 1 cut(s) | 550 |
| SaqAI | TTAA | 6 cut(s) | 240, 261, 479, 1094, 1350, 1456 |
| SatI | GCNGC | 5 cut(s) | 50, 106, 756, 881, 1309 |
| Sau3AI | GATC | 7 cut(s) | 19, 346, 518, 715, 1198, 1235, 1354 |
| Sau96I | GGNCC | 3 cut(s) | 10, 566, 1071 |
| SchI | GAGTC | 2 cut(s) | 1207, 1262 |
| ScrFI | CCNGG | 2 cut(s) | 132, 133 |
| SfaNI | GCATC | 5 cut(s) | 448, 643, 758, 793, 976 |
| SfcI | CTRYAG | 1 cut(s) | 753 |
| SfuI | TTCGAA | 1 cut(s) | 1040 |
| SinI | GGWCC | 3 cut(s) | 10, 566, 1071 |
| SmaI | CCCGGG | 1 cut(s) | 133 |
| Sse9I | AATT | 8 cut(s) | 215, 257, 371, 416, 625, 915, 1042, 1085 |
| SsiI | CCGC | 3 cut(s) | 50, 106, 407 |
| SspI | AATATT | 1 cut(s) | 1126 |
| SspMI | CTAG | 4 cut(s) | 165, 402, 576, 1292 |
| StyD4I | CCNGG | 2 cut(s) | 130, 131 |
| StyI | CCWWGG | 2 cut(s) | 27, 510 |
| TaaI | ACNGT | 1 cut(s) | 306 |
| TaiI | ACGT | 4 cut(s) | 93, 771, 994, 1083 |
| TaqI | TCGA | 4 cut(s) | 22, 56, 87, 1040 |
| TaqII | GACCGA | 1 cut(s) | 1059 |
| TasI | AATT | 8 cut(s) | 215, 257, 371, 416, 625, 915, 1042, 1085 |
| TauI | GCSGC | 2 cut(s) | 52, 108 |
| TfiI | GAWTC | 3 cut(s) | 151, 394, 1295 |
| Tru1I | TTAA | 6 cut(s) | 240, 261, 479, 1094, 1350, 1456 |
| Tru9I | TTAA | 6 cut(s) | 240, 261, 479, 1094, 1350, 1456 |
| TscAI | CASTG | 3 cut(s) | 311, 676, 1293 |
| TseFI | GTSAC | 2 cut(s) | 739, 873 |
| TseI | GCWGC | 3 cut(s) | 755, 880, 1308 |
| Tsp45I | GTSAC | 2 cut(s) | 739, 873 |
| TspDTI | ATGAA | 1 cut(s) | 879 |
| TspGWI | ACGGA | 3 cut(s) | 116, 144, 1189 |
| TspMI | CCCGGG | 1 cut(s) | 131 |
| TspRI | CASTG | 3 cut(s) | 311, 676, 1293 |
| VpaK11BI | GGWCC | 3 cut(s) | 10, 566, 1071 |
| VspI | ATTAAT | 1 cut(s) | 479 |
| XapI | RAATTY | 4 cut(s) | 215, 371, 625, 1042 |
| XbaI | TCTAGA | 2 cut(s) | 164, 575 |
| XceI | RCATGY | 1 cut(s) | 874 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1319 |
| XmaI | CCCGGG | 1 cut(s) | 131 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1390 |
| XspI | CTAG | 4 cut(s) | 165, 402, 576, 1292 |