Regulator of nonsense transcripts
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD08G1243800.v1.1 MD15G1438000.v1.1 |
| prunus_persica | Prupe.1G581100_v2.0.a1 Prupe.1G581100_v2.0.a1 Prupe.1G581100_v2.0.a1 Prupe.1G581100_v2.0.a1 Prupe.1G581100_v2.0.a1 Prupe.1G581100_v2.0.a1 |
| pyrus_communis | pycom08g21150 pycom15g38610 |
| rosa_rugosa | Rorug07G0194200 |
| rosa_samantha | Rh7AG335300 Rh7CG353000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 89 |
| AclWI | GGATC | 1 cut(s) | 218 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 89 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 183 |
| AluBI | AGCT | 1 cut(s) | 211 |
| AluI | AGCT | 1 cut(s) | 211 |
| AlwI | GGATC | 1 cut(s) | 218 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 89 |
| AoxI | GGCC | 1 cut(s) | 142 |
| AspS9I | GGNCC | 1 cut(s) | 185 |
| AsuHPI | GGTGA | 1 cut(s) | 104 |
| AvaII | GGWCC | 1 cut(s) | 185 |
| BccI | CCATC | 1 cut(s) | 68 |
| Bme18I | GGWCC | 1 cut(s) | 185 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 183 |
| BmgT120I | GGNCC | 1 cut(s) | 185 |
| BmiI | GGNNCC | 2 cut(s) | 22, 124 |
| BsaJI | CCNNGG | 1 cut(s) | 188 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 89 |
| Bse1I | ACTGG | 1 cut(s) | 83 |
| BseDI | CCNNGG | 1 cut(s) | 188 |
| BseGI | GGATG | 2 cut(s) | 73, 202 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 89 |
| BseNI | ACTGG | 1 cut(s) | 83 |
| BshFI | GGCC | 1 cut(s) | 144 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 89 |
| BsnI | GGCC | 1 cut(s) | 144 |
| Bsp143I | GATC | 1 cut(s) | 223 |
| BspANI | GGCC | 1 cut(s) | 144 |
| BspLI | GGNNCC | 2 cut(s) | 22, 124 |
| BspPI | GGATC | 1 cut(s) | 218 |
| BsrI | ACTGG | 1 cut(s) | 83 |
| BssECI | CCNNGG | 1 cut(s) | 188 |
| BssMI | GATC | 1 cut(s) | 223 |
| BssT1I | CCWWGG | 1 cut(s) | 188 |
| BstF5I | GGATG | 2 cut(s) | 73, 202 |
| BstKTI | GATC | 1 cut(s) | 226 |
| BstMBI | GATC | 1 cut(s) | 223 |
| BstX2I | RGATCY | 1 cut(s) | 223 |
| BstYI | RGATCY | 1 cut(s) | 223 |
| BsuRI | GGCC | 1 cut(s) | 144 |
| BtsCI | GGATG | 2 cut(s) | 73, 202 |
| CaiI | CAGNNNCTG | 1 cut(s) | 89 |
| Cfr13I | GGNCC | 1 cut(s) | 185 |
| CviAII | CATG | 3 cut(s) | 128, 134, 161 |
| CviJI | RGCY | 7 cut(s) | 21, 78, 117, 123, 144, 169, 211 |
| CviKI_1 | RGCY | 7 cut(s) | 21, 78, 117, 123, 144, 169, 211 |
| DpnI | GATC | 1 cut(s) | 225 |
| DpnII | GATC | 1 cut(s) | 223 |
| DriI | GACNNNNNGTC | 1 cut(s) | 183 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 183 |
| Eco130I | CCWWGG | 1 cut(s) | 188 |
| Eco147I | AGGCCT | 1 cut(s) | 144 |
| Eco47I | GGWCC | 1 cut(s) | 185 |
| EcoT14I | CCWWGG | 1 cut(s) | 188 |
| ErhI | CCWWGG | 1 cut(s) | 188 |
| FaeI | CATG | 3 cut(s) | 131, 137, 164 |
| FaiI | YATR | 9 cut(s) | 8, 15, 120, 129, 135, 162, 206, 219, 272 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 259 |
| FatI | CATG | 3 cut(s) | 127, 133, 160 |
| FokI | GGATG | 2 cut(s) | 80, 209 |
| HaeIII | GGCC | 1 cut(s) | 144 |
| Hin1II | CATG | 3 cut(s) | 131, 137, 164 |
| HincII | GTYRAC | 1 cut(s) | 151 |
| HindII | GTYRAC | 1 cut(s) | 151 |
| HinfI | GANTC | 1 cut(s) | 178 |
| HphI | GGTGA | 1 cut(s) | 104 |
| Hpy166II | GTNNAC | 1 cut(s) | 151 |
| Hpy188III | TCNNGA | 2 cut(s) | 227, 255 |
| Hpy8I | GTNNAC | 1 cut(s) | 151 |
| Hpy99I | CGWCG | 2 cut(s) | 45, 252 |
| HpyAV | CCTTC | 1 cut(s) | 89 |
| HpyCH4IV | ACGT | 1 cut(s) | 247 |
| HpyCH4V | TGCA | 1 cut(s) | 164 |
| HpySE526I | ACGT | 1 cut(s) | 247 |
| Hsp92II | CATG | 3 cut(s) | 131, 137, 164 |
| Kzo9I | GATC | 1 cut(s) | 223 |
| LmnI | GCTCC | 3 cut(s) | 26, 47, 128 |
| LpnPI | CCDG | 4 cut(s) | 75, 96, 183, 240 |
| MaeII | ACGT | 1 cut(s) | 247 |
| MaeIII | GTNAC | 1 cut(s) | 172 |
| MalI | GATC | 1 cut(s) | 225 |
| MboI | GATC | 1 cut(s) | 223 |
| MflI | RGATCY | 1 cut(s) | 223 |
| MlyI | GAGTC | 1 cut(s) | 172 |
| MnlI | CCTC | 1 cut(s) | 134 |
| MslI | CAYNNNNRTG | 1 cut(s) | 132 |
| NdeII | GATC | 1 cut(s) | 223 |
| NlaIII | CATG | 3 cut(s) | 131, 137, 164 |
| NlaIV | GGNNCC | 2 cut(s) | 22, 124 |
| NmuCI | GTSAC | 1 cut(s) | 172 |
| PceI | AGGCCT | 1 cut(s) | 144 |
| PflFI | GACNNNGTC | 1 cut(s) | 261 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 89 |
| PleI | GAGTC | 1 cut(s) | 172 |
| PpsI | GAGTC | 1 cut(s) | 172 |
| PspN4I | GGNNCC | 2 cut(s) | 22, 124 |
| PspPI | GGNCC | 1 cut(s) | 185 |
| PstNI | CAGNNNCTG | 1 cut(s) | 89 |
| PsuI | RGATCY | 1 cut(s) | 223 |
| PsyI | GACNNNGTC | 1 cut(s) | 261 |
| RseI | CAYNNNNRTG | 1 cut(s) | 132 |
| Sau3AI | GATC | 1 cut(s) | 223 |
| Sau96I | GGNCC | 1 cut(s) | 185 |
| SchI | GAGTC | 1 cut(s) | 172 |
| SetI | ASST | 4 cut(s) | 156, 213, 250, 277 |
| SinI | GGWCC | 1 cut(s) | 185 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 132 |
| SseBI | AGGCCT | 1 cut(s) | 144 |
| StuI | AGGCCT | 1 cut(s) | 144 |
| StyI | CCWWGG | 1 cut(s) | 188 |
| TaiI | ACGT | 1 cut(s) | 250 |
| TaqII | GACCGA | 1 cut(s) | 240 |
| TseFI | GTSAC | 1 cut(s) | 172 |
| Tsp45I | GTSAC | 1 cut(s) | 172 |
| TspDTI | ATGAA | 2 cut(s) | 150, 213 |
| Tth111I | GACNNNGTC | 1 cut(s) | 261 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 185 |