Prupe.1G586200_v2.0.a1

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0021152
Physical Location & Seq
Reverse (-)
47599083 .. 47599691
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G586200.1

Sequence Viewer

Length: 609 bp
ATGCCCAGGAGGATAGTGACGAAGATGGTGGCCTTCTTAGGCCTCCTCCTCCTCATGCTCATGGCCGCCACCACCAAAACCCATGCCTTAATTCCATACCCAACAAGACCATCATCACTAAGTCTATGGGGCATGACCGATGACCCCTTCAGAATTCTCGAACAAACCCCCTTCACCATCCCCAGAGACGTCTCCGCCGCCGCCCTCCAAGACACGCTCGCTTTGGCACGTGCCGACTGGAAGGAGACGGCCACTGCGCACGTGATCACATTGGACATTCCGGGGATGAAGAAGGAGGACGTGAAGATAGAGGTGGAGGAGAACAGGGTTCTCAGGATCAGCGGAGAAAGGAAGACGGAGGAACAAGTGGAAGGCGACAAGTGGCACAGAGCTGAGAGGACAAATGGCAAGTTCTGGAGGCAGTTCAGGCTGCCTGGGAATGCTGACGTGGATCAGATCAAGGCTCATCTTGAGGACGGGGTGCTGAGAATTACGGTGCCAAAGTTTGCTGCGGAGAAGAAAAGGCAGCCTAAGCTCATCGACATTGCTCACCACACTACTTCCTCCGATGATGCGGATATCAAGGCTGCCAGTGCCAAGGTCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

203

Amino Acids

22.71

Weight (kDa)

9.12

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021152)

Species Orthologous Gene IDs
malus_domestica MD08G1249100.v1.1 MD15G1443700.v1.1
prunus_persica Prupe.1G586200_v2.0.a1
pyrus_communis pycom08g21560 pycom15g39120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 192
Acc16I TGCGCA 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 496
AciI CCGC 7 cut(s) 66, 195, 198, 201, 342, 512, 575
AclWI GGATC 2 cut(s) 344, 459
AcoI YGGCCR 2 cut(s) 63, 249
AcsI RAATTY 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 133
AcvI CACGTG 2 cut(s) 230, 262
AcyI GRCGYC 1 cut(s) 189
AjiI CACGTC 2 cut(s) 301, 448
AjnI CCWGG 2 cut(s) 5, 433
AluBI AGCT 2 cut(s) 392, 535
AluI AGCT 2 cut(s) 392, 535
Alw26I GTCTC 3 cut(s) 180, 196, 239
AlwI GGATC 2 cut(s) 344, 459
AoxI GGCC 4 cut(s) 30, 40, 63, 249
ApeKI GCWGC 4 cut(s) 430, 509, 526, 587
ApoI RAATTY 1 cut(s) 153
AspLEI GCGC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 282
AsuHPI GGTGA 2 cut(s) 166, 542
BanI GGYRCC 1 cut(s) 496
BbrPI CACGTG 2 cut(s) 230, 262
BbsI GAAGAC 1 cut(s) 359
BbvI GCAGC 4 cut(s) 417, 496, 538, 574
BccI CCATC 3 cut(s) 19, 118, 185
BceAI ACGGC 1 cut(s) 264
BciT130I CCWGG 2 cut(s) 7, 435
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 282
BcoDI GTCTC 3 cut(s) 180, 196, 239
BisI GCNGC 7 cut(s) 66, 198, 201, 431, 510, 527, 588
BlsI GCNGC 7 cut(s) 67, 199, 202, 432, 511, 528, 589
Bme1390I CCNGG 3 cut(s) 7, 282, 435
BmgBI CACGTC 2 cut(s) 301, 448
BmiI GGNNCC 1 cut(s) 498
BmrFI CCNGG 3 cut(s) 7, 282, 435
BmsI GCATC 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 359
BpmI CTGGAG 1 cut(s) 436
Bpu10I CCTNAGC 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 282
BsaAI YACGTR 2 cut(s) 230, 262
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 4 cut(s) 5, 281, 434, 597
Bse1I ACTGG 2 cut(s) 242, 591
Bse3DI GCAATG 1 cut(s) 543
BseBI CCWGG 2 cut(s) 7, 435
BseDI CCNNGG 4 cut(s) 5, 281, 434, 597
BseGI GGATG 2 cut(s) 177, 291
BseMI GCAATG 1 cut(s) 543
BseMII CTCAG 3 cut(s) 346, 384, 476
BseNI ACTGG 2 cut(s) 242, 591
BseRI GAGGAG 4 cut(s) 35, 38, 41, 332
BseXI GCAGC 4 cut(s) 417, 496, 538, 574
BshFI GGCC 4 cut(s) 32, 42, 65, 251
BshNI GGYRCC 1 cut(s) 496
BsiSI CCGG 1 cut(s) 281
BsmAI GTCTC 3 cut(s) 180, 196, 239
BsmBI CGTCTC 3 cut(s) 180, 196, 239
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 4 cut(s) 32, 42, 65, 251
Bsp143I GATC 4 cut(s) 264, 336, 451, 456
BspACI CCGC 7 cut(s) 66, 195, 198, 201, 342, 512, 575
BspANI GGCC 4 cut(s) 32, 42, 65, 251
BspCNI CTCAG 3 cut(s) 345, 385, 477
BspLI GGNNCC 1 cut(s) 498
BspPI GGATC 2 cut(s) 344, 459
BspT107I GGYRCC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 543
BsrI ACTGG 2 cut(s) 242, 591
BssECI CCNNGG 4 cut(s) 5, 281, 434, 597
BssMI GATC 4 cut(s) 264, 336, 451, 456
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 597
Bst2UI CCWGG 2 cut(s) 7, 435
Bst4CI ACNGT 1 cut(s) 496
BstACI GRCGYC 1 cut(s) 189
BstBAI YACGTR 2 cut(s) 230, 262
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 6 cut(s) 37, 119, 332, 393, 485, 531
BstF5I GGATG 2 cut(s) 177, 291
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 4 cut(s) 267, 339, 454, 459
BstMAI GTCTC 3 cut(s) 180, 196, 239
BstMBI GATC 4 cut(s) 264, 336, 451, 456
BstMWI GCNNNNNNNGC 4 cut(s) 427, 532, 593, 602
BstNI CCWGG 2 cut(s) 7, 435
BstSCI CCNGG 3 cut(s) 5, 280, 433
BstV1I GCAGC 4 cut(s) 417, 496, 538, 574
BstV2I GAAGAC 1 cut(s) 359
BsuRI GGCC 4 cut(s) 32, 42, 65, 251
BtrI CACGTC 2 cut(s) 301, 448
BtsCI GGATG 2 cut(s) 177, 291
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 252, 598
Cac8I GCNNGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 259
CviAII CATG 5 cut(s) 55, 61, 83, 133, 606
DdeI CTNAG 6 cut(s) 37, 119, 332, 393, 485, 531
DpnI GATC 4 cut(s) 266, 338, 453, 458
DpnII GATC 4 cut(s) 264, 336, 451, 456
EaeI YGGCCR 2 cut(s) 63, 249
EciI GGCGGA 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 597
Eco147I AGGCCT 1 cut(s) 42
Eco32I GATATC 1 cut(s) 580
Eco57I CTGAAG 1 cut(s) 133
Eco72I CACGTG 2 cut(s) 230, 262
EcoRI GAATTC 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 5, 433
EcoRV GATATC 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 597
ErhI CCWWGG 1 cut(s) 597
Esp3I CGTCTC 3 cut(s) 180, 196, 239
FaeI CATG 5 cut(s) 58, 64, 86, 136, 609
FaiI YATR 7 cut(s) 56, 62, 84, 97, 127, 134, 607
FatI CATG 5 cut(s) 54, 60, 82, 132, 605
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 7 cut(s) 66, 198, 201, 431, 510, 527, 588
FokI GGATG 2 cut(s) 164, 298
Fsp4HI GCNGC 7 cut(s) 66, 198, 201, 431, 510, 527, 588
FspI TGCGCA 1 cut(s) 258
GlaI GCGC 1 cut(s) 258
GluI GCNGC 7 cut(s) 66, 198, 201, 431, 510, 527, 588
GsuI CTGGAG 1 cut(s) 436
HaeIII GGCC 4 cut(s) 32, 42, 65, 251
HapII CCGG 1 cut(s) 281
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 5 cut(s) 58, 64, 86, 136, 609
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HpaII CCGG 1 cut(s) 281
HphI GGTGA 2 cut(s) 166, 542
Hpy188I TCNGA 3 cut(s) 152, 456, 568
Hpy188III TCNNGA 4 cut(s) 158, 334, 415, 470
HpyAV CCTTC 6 cut(s) 43, 157, 181, 235, 286, 365
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4IV ACGT 5 cut(s) 189, 229, 261, 300, 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 427, 532, 593, 602
HpyF3I CTNAG 6 cut(s) 37, 119, 332, 393, 485, 531
HpySE526I ACGT 5 cut(s) 189, 229, 261, 300, 447
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 5 cut(s) 58, 64, 86, 136, 609
HspAI GCGC 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 4 cut(s) 264, 336, 451, 456
Lsp1109I GCAGC 4 cut(s) 417, 496, 538, 574
LweI GCATC 1 cut(s) 562
MaeII ACGT 5 cut(s) 189, 229, 261, 300, 447
MaeIII GTNAC 1 cut(s) 16
MalI GATC 4 cut(s) 266, 338, 453, 458
MboI GATC 4 cut(s) 264, 336, 451, 456
MboII GAAGA 5 cut(s) 34, 301, 316, 364, 529
MluCI AATT 3 cut(s) 90, 153, 489
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 342
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 3 cut(s) 7, 282, 435
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 2 cut(s) 7, 435
MwoI GCNNNNNNNGC 4 cut(s) 427, 532, 593, 602
NciI CCSGG 1 cut(s) 282
NdeII GATC 4 cut(s) 264, 336, 451, 456
NlaIII CATG 5 cut(s) 58, 64, 86, 136, 609
NlaIV GGNNCC 1 cut(s) 498
NmuCI GTSAC 1 cut(s) 16
NsbI TGCGCA 1 cut(s) 258
PceI AGGCCT 1 cut(s) 42
PctI GAATGC 1 cut(s) 445
PkrI GCNGC 7 cut(s) 67, 199, 202, 432, 511, 528, 589
PmaCI CACGTG 2 cut(s) 230, 262
PmlI CACGTG 2 cut(s) 230, 262
Ppu21I YACGTR 2 cut(s) 230, 262
Psp6I CCWGG 2 cut(s) 5, 433
PspCI CACGTG 2 cut(s) 230, 262
PspGI CCWGG 2 cut(s) 5, 433
PspN4I GGNNCC 1 cut(s) 498
RseI CAYNNNNRTG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 7 cut(s) 66, 198, 201, 431, 510, 527, 588
Sau3AI GATC 4 cut(s) 264, 336, 451, 456
ScrFI CCNGG 3 cut(s) 7, 282, 435
SetI ASST 9 cut(s) 192, 232, 264, 303, 315, 394, 450, 537, 603
SfaNI GCATC 1 cut(s) 562
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 3 cut(s) 90, 153, 489
SseBI AGGCCT 1 cut(s) 42
SsiI CCGC 7 cut(s) 66, 195, 198, 201, 342, 512, 575
StuI AGGCCT 1 cut(s) 42
StyD4I CCNGG 3 cut(s) 5, 280, 433
StyI CCWWGG 1 cut(s) 597
TaaI ACNGT 1 cut(s) 496
TaiI ACGT 5 cut(s) 192, 232, 264, 303, 450
TaqI TCGA 2 cut(s) 159, 540
TaqII GACCGA 1 cut(s) 152
TasI AATT 3 cut(s) 90, 153, 489
TauI GCSGC 3 cut(s) 68, 200, 203
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 2 cut(s) 259, 598
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 4 cut(s) 430, 509, 526, 587
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 1 cut(s) 302
TspGWI ACGGA 1 cut(s) 371
TspRI CASTG 2 cut(s) 259, 598
XapI RAATTY 1 cut(s) 153
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.