Prupe.2G026700_v2.0.a1

Cytokinin dehydrogenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
2753797 .. 2759413
5617 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G026700.2

Sequence Viewer

Length: 1590 bp
ATGAGGTATCCACCAGTTTACTTCCTTAAACAAATGAACACTTTTATCATAAAAGGCTTCATGATCTTGTTCGTGAGCTGTGTAACCATCAAATTGAACCTTTGCTCTCCAAACACTCCCTCATTGAATACACTTCCCCTCAATGGGCATTTCAACTTTCATGAAGTTCACCATGCAGCCAGAGATTTTGGCAACAGATACCAGTTCCTCCCTATGGCAGTACTACATCCAAAAACGGTTTCTGATATCGCCACTACAATTAAGCATATTTGGGATATGGGTCCTCATTCAGAGCTCACAGTTGCAGCTAGAGGCCATGGCCACTCACTCCAGGGCCAGGCACAAACCCAAAGGGGAGTTGTCATCAATATGGAATCACTCGAGGGCCCTGAAATCCAAGTTTACACTGGAAGTTCTCCATATGTGGATGTCTCCGGTGGTGAGTTGTGGATAAATATTCTGCATGAAAGCTTGAAATATGGATTAGCGCCAAAATCATGGACAGACTACCTACATCTAACTATTGGTGGTACTCTGTCTAATGCTGGGATCAGTGGGCAGGCATTCCGGCATGGTCCCCAGATCAGCAATGTCCACCAGCTGGAAGTTGTCACAGGAAAAGGGGAAGTTATAAATTGTTCAGAGGAGCAGAATGAAGACCTATTTCATAGTGTTCTTGGAGGGCTTGGTCAGTTTGGCATCATAACCCGGGCGAGAATATCGTTGGAAGCAGCACCTGCACGGGTAAAATGGATTAGAGTCCTGTATTCAGATTTTGCGGCCTTTACCCAAGATCAGGAGCATCTAATATCTTCAGAAAATACATTTGACTACGTTGAGGGTTTTGTGATAATAAACCGGACCGGTCTGCTAAACAACTGGAGATCATCCTTCAATTCAAAGGACCCGGTTCAGGCCAGCCAGTTCAAGTCAGATGGAAGAACCCTCTTCTGCCTAGAATTGGCCAAATACTTCAACCTGGACAAGACTGACTTAATAAATGAGGAAGTTGAGAACTTCTTGTCTCGGTTAAGCTATATCCGTTCAACGCTATTCATGTCAGAAGTTGCATACATAGATTTCTTGGACAGGGTACATGTGTCTGAGATCAAATTACGATCAAAAGATTTGTGGGACGTTCCACACCCATGGCTCAATCTTCTAATCCCAAAAAGCAAAATTCACACTTTTGCTGAAGAAGTCTTTGGCAGTATCCTTACAGCAACAAGCAACGGCCCCATCCTCATCTATCCAGTCAACAGATCAAAGTGGGACAACAGAACTTCCGTAGTTATACCGGAGGAACATATTTTCTACTTAGTGGCATTCCTTACATCTGCTGTTCCCTCTTCAACTGGAACTGACGGATTAGAACACATCTTAACTCAGAACAAAAGAATTCTAGAATTCTGTGAAACAGCCCATCTTGGGGTCAAGCAATATCTACCCCATTACACTACAAAGAAAGAATGGCAGGCCCACTTTGGCCCACGCTGGGAAGCTTTTGTGCAGAGAAAATCTGCTTATGACCCTCTGGCAATACTTGCTCCTGGACAAAGAATATTTCAAAAGGCAATACCCTTCTCATGA

Protein Analysis

530

Amino Acids

59.82

Weight (kDa)

6.64

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 632
AarI CACCTGC 1 cut(s) 745
Acc36I ACCTGC 1 cut(s) 745
AccB7I CCANNNNNTGG 1 cut(s) 601
AciI CCGC 1 cut(s) 779
AclWI GGATC 1 cut(s) 557
AcoI YGGCCR 2 cut(s) 319, 963
AcsI RAATTY 3 cut(s) 1179, 1398, 1406
AcuI CTGAAG 2 cut(s) 798, 1215
AfaI GTAC 3 cut(s) 222, 532, 1095
AflIII ACRYGT 1 cut(s) 1096
AgeI ACCGGT 1 cut(s) 863
AjnI CCWGG 4 cut(s) 330, 336, 978, 1549
AjuI GAANNNNNNNTTGG 4 cut(s) 223, 255, 1188, 1220
AluBI AGCT 7 cut(s) 78, 295, 308, 471, 601, 1035, 1502
AluI AGCT 7 cut(s) 78, 295, 308, 471, 601, 1035, 1502
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 436, 1029
AlwI GGATC 1 cut(s) 557
AlwNI CAGNNNCTG 1 cut(s) 737
Ama87I CYCGRG 2 cut(s) 380, 708
ApaI GGGCCC 1 cut(s) 389
ApeKI GCWGC 3 cut(s) 176, 305, 731
ApoI RAATTY 3 cut(s) 1179, 1398, 1406
AsiGI ACCGGT 1 cut(s) 863
AspLEI GCGC 1 cut(s) 490
AsuC2I CCSGG 3 cut(s) 709, 710, 908
AsuHPI GGTGA 2 cut(s) 161, 452
AvaI CYCGRG 2 cut(s) 380, 708
AvaII GGWCC 4 cut(s) 281, 575, 861, 904
BaeGI GKGCMC 1 cut(s) 389
BaeI ACNNNNGTAYC 2 cut(s) 1085, 1118
BalI TGGCCA 2 cut(s) 321, 965
BanII GRGCYC 2 cut(s) 297, 389
BbsI GAAGAC 1 cut(s) 663
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 3 cut(s) 188, 317, 743
BccI CCATC 4 cut(s) 95, 929, 1247, 1431
BceAI ACGGC 1 cut(s) 1249
BciT130I CCWGG 4 cut(s) 332, 338, 980, 1551
BciVI GTATCC 2 cut(s) 18, 1223
BcnI CCSGG 3 cut(s) 709, 710, 908
BcoDI GTCTC 2 cut(s) 436, 1029
BfaI CTAG 3 cut(s) 309, 956, 1403
BfoI RGCGCY 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 745
BfuI GTATCC 2 cut(s) 18, 1223
BisI GCNGC 4 cut(s) 177, 306, 732, 780
BlsI GCNGC 4 cut(s) 178, 307, 733, 781
BmcAI AGTACT 1 cut(s) 222
Bme1390I CCNGG 7 cut(s) 332, 338, 709, 710, 908, 980, 1551
Bme18I GGWCC 4 cut(s) 281, 575, 861, 904
BmeT110I CYCGRG 2 cut(s) 380, 708
BmiI GGNNCC 5 cut(s) 282, 387, 577, 906, 1237
BmrFI CCNGG 7 cut(s) 332, 338, 709, 710, 908, 980, 1551
BmsI GCATC 2 cut(s) 708, 811
BpiI GAAGAC 1 cut(s) 663
BpmI CTGGAG 2 cut(s) 314, 901
BpuMI CCSGG 3 cut(s) 709, 710, 908
BsaJI CCNNGG 4 cut(s) 316, 331, 708, 1148
BsaWI WCCGGW 4 cut(s) 434, 858, 863, 1297
Bse118I RCCGGY 1 cut(s) 863
Bse1I ACTGG 7 cut(s) 14, 202, 412, 884, 922, 1253, 1360
Bse3DI GCAATG 1 cut(s) 595
BseBI CCWGG 4 cut(s) 332, 338, 980, 1551
BseDI CCNNGG 4 cut(s) 316, 331, 708, 1148
BseGI GGATG 4 cut(s) 226, 433, 887, 1239
BseMI GCAATG 1 cut(s) 595
BseMII CTCAG 2 cut(s) 1095, 1400
BseNI ACTGG 7 cut(s) 14, 202, 412, 884, 922, 1253, 1360
BseRI GAGGAG 1 cut(s) 659
BseSI GKGCMC 1 cut(s) 389
BseXI GCAGC 3 cut(s) 188, 317, 743
BseYI CCCAGC 2 cut(s) 545, 1494
BsgI GTGCAG 2 cut(s) 723, 1529
BshTI ACCGGT 1 cut(s) 863
BsiHKAI GWGCWC 1 cut(s) 297
BsiHKCI CYCGRG 2 cut(s) 380, 708
BsiSI CCGG 7 cut(s) 435, 568, 709, 859, 864, 908, 1298
BslFI GGGAC 3 cut(s) 561, 1148, 1286
BsmAI GTCTC 2 cut(s) 436, 1029
BsmFI GGGAC 3 cut(s) 561, 1148, 1286
BsmI GAATGC 2 cut(s) 563, 1325
BsoBI CYCGRG 2 cut(s) 380, 708
Bsp120I GGGCCC 1 cut(s) 385
Bsp1286I GDGCHC 2 cut(s) 297, 389
Bsp143I GATC 8 cut(s) 63, 549, 582, 793, 884, 1107, 1118, 1262
Bsp19I CCATGG 2 cut(s) 316, 1148
BspACI CCGC 1 cut(s) 779
BspCNI CTCAG 2 cut(s) 1096, 1399
BspHI TCATGA 3 cut(s) 60, 160, 1586
BspLI GGNNCC 5 cut(s) 282, 387, 577, 906, 1237
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 1 cut(s) 557
BsrDI GCAATG 1 cut(s) 595
BsrFI RCCGGY 1 cut(s) 863
BsrI ACTGG 7 cut(s) 14, 202, 412, 884, 922, 1253, 1360
BssAI RCCGGY 1 cut(s) 863
BssECI CCNNGG 4 cut(s) 316, 331, 708, 1148
BssMI GATC 8 cut(s) 63, 549, 582, 793, 884, 1107, 1118, 1262
BssT1I CCWWGG 2 cut(s) 316, 1148
Bst2UI CCWGG 4 cut(s) 332, 338, 980, 1551
Bst4CI ACNGT 2 cut(s) 238, 301
Bst6I CTCTTC 2 cut(s) 953, 1354
BstAPI GCANNNNNTGC 2 cut(s) 737, 1544
BstC8I GCNNGC 3 cut(s) 561, 919, 1476
BstDEI CTNAG 3 cut(s) 1104, 1318, 1386
BstDSI CCRYGG 2 cut(s) 316, 1148
BstF5I GGATG 4 cut(s) 226, 433, 887, 1239
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 8 cut(s) 66, 552, 585, 796, 887, 1110, 1121, 1265
BstMAI GTCTC 2 cut(s) 436, 1029
BstMBI GATC 8 cut(s) 63, 549, 582, 793, 884, 1107, 1118, 1262
BstMWI GCNNNNNNNGC 2 cut(s) 737, 1544
BstNI CCWGG 4 cut(s) 332, 338, 980, 1551
BstNSI RCATGY 1 cut(s) 1100
BstSCI CCNGG 7 cut(s) 330, 336, 707, 708, 906, 978, 1549
BstSLI GKGCMC 1 cut(s) 389
BstV1I GCAGC 3 cut(s) 188, 317, 743
BstV2I GAAGAC 1 cut(s) 663
BstXI CCANNNNNNTGG 2 cut(s) 498, 1149
BsuI GTATCC 2 cut(s) 18, 1223
BtgI CCRYGG 2 cut(s) 316, 1148
BtsCI GGATG 4 cut(s) 226, 433, 887, 1239
BtsIMutI CAGTG 2 cut(s) 405, 559
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 3 cut(s) 561, 919, 1476
CaiI CAGNNNCTG 1 cut(s) 737
CciI TCATGA 3 cut(s) 60, 160, 1586
CfoI GCGC 1 cut(s) 490
Cfr10I RCCGGY 1 cut(s) 863
Cfr9I CCCGGG 1 cut(s) 708
CpoI CGGWCCG 1 cut(s) 861
Csp6I GTAC 3 cut(s) 221, 531, 1094
CspAI ACCGGT 1 cut(s) 863
CspI CGGWCCG 1 cut(s) 861
CviQI GTAC 3 cut(s) 221, 531, 1094
DdeI CTNAG 3 cut(s) 1104, 1318, 1386
DpnI GATC 8 cut(s) 65, 551, 584, 795, 886, 1109, 1120, 1264
DpnII GATC 8 cut(s) 63, 549, 582, 793, 884, 1107, 1118, 1262
EaeI YGGCCR 2 cut(s) 319, 963
Eam1104I CTCTTC 2 cut(s) 953, 1354
EarI CTCTTC 2 cut(s) 953, 1354
Ecl136II GAGCTC 1 cut(s) 295
Eco130I CCWWGG 2 cut(s) 316, 1148
Eco24I GRGCYC 2 cut(s) 297, 389
Eco32I GATATC 1 cut(s) 247
Eco47I GGWCC 4 cut(s) 281, 575, 861, 904
Eco53kI GAGCTC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 798, 1215
Eco88I CYCGRG 2 cut(s) 380, 708
EcoICRI GAGCTC 1 cut(s) 295
EcoO109I RGGNCCY 4 cut(s) 281, 385, 386, 904
EcoRI GAATTC 2 cut(s) 1398, 1406
EcoRII CCWGG 4 cut(s) 330, 336, 978, 1549
EcoRV GATATC 1 cut(s) 247
EcoT14I CCWWGG 2 cut(s) 316, 1148
EcoT38I GRGCYC 2 cut(s) 297, 389
ErhI CCWWGG 2 cut(s) 316, 1148
FalI AAGNNNNNCTT 2 cut(s) 977, 1009
FaqI GGGAC 3 cut(s) 561, 1148, 1286
FauNDI CATATG 1 cut(s) 421
Fnu4HI GCNGC 4 cut(s) 177, 306, 732, 780
FokI GGATG 4 cut(s) 213, 440, 874, 1226
FriOI GRGCYC 2 cut(s) 297, 389
Fsp4HI GCNGC 4 cut(s) 177, 306, 732, 780
FspBI CTAG 3 cut(s) 309, 956, 1403
GlaI GCGC 1 cut(s) 489
GluI GCNGC 4 cut(s) 177, 306, 732, 780
GsaI CCCAGC 2 cut(s) 549, 1498
GsuI CTGGAG 2 cut(s) 314, 901
HaeII RGCGCY 1 cut(s) 491
HapII CCGG 7 cut(s) 435, 568, 709, 859, 864, 908, 1298
HhaI GCGC 1 cut(s) 490
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 1258
HindII GTYRAC 1 cut(s) 1258
HindIII AAGCTT 2 cut(s) 469, 1500
HinfI GANTC 2 cut(s) 374, 759
HpaII CCGG 7 cut(s) 435, 568, 709, 859, 864, 908, 1298
HphI GGTGA 2 cut(s) 161, 452
Hpy166II GTNNAC 5 cut(s) 19, 169, 403, 595, 1258
Hpy188I TCNGA 9 cut(s) 244, 292, 643, 772, 817, 934, 1063, 1105, 1389
Hpy188III TCNNGA 6 cut(s) 61, 73, 161, 797, 1403, 1587
Hpy8I GTNNAC 5 cut(s) 19, 169, 403, 595, 1258
HpyAV CCTTC 1 cut(s) 901
HpyCH4III ACNGT 2 cut(s) 238, 301
HpyCH4IV ACGT 2 cut(s) 834, 1137
HpyCH4V TGCA 6 cut(s) 176, 305, 463, 740, 1070, 1510
HpyF10VI GCNNNNNNNGC 2 cut(s) 737, 1544
HpyF3I CTNAG 3 cut(s) 1104, 1318, 1386
HpySE526I ACGT 2 cut(s) 834, 1137
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 8 cut(s) 63, 549, 582, 793, 884, 1107, 1118, 1262
LmnI GCTCC 3 cut(s) 646, 799, 1552
Lsp1109I GCAGC 3 cut(s) 188, 317, 743
LweI GCATC 2 cut(s) 708, 811
MaeI CTAG 3 cut(s) 309, 956, 1403
MaeII ACGT 2 cut(s) 834, 1137
MaeIII GTNAC 2 cut(s) 82, 610
MalI GATC 8 cut(s) 65, 551, 584, 795, 886, 1109, 1120, 1264
MboI GATC 8 cut(s) 63, 549, 582, 793, 884, 1107, 1118, 1262
MboII GAAGA 7 cut(s) 668, 804, 940, 951, 1151, 1208, 1341
MhlI GDGCHC 2 cut(s) 297, 389
MlsI TGGCCA 2 cut(s) 321, 965
MluCI AATT 9 cut(s) 92, 258, 634, 895, 959, 1112, 1179, 1398, 1406
MluNI TGGCCA 2 cut(s) 321, 965
MlyI GAGTC 1 cut(s) 768
MmeI TCCRAC 1 cut(s) 705
Mox20I TGGCCA 2 cut(s) 321, 965
MscI TGGCCA 2 cut(s) 321, 965
MseI TTAA 5 cut(s) 27, 261, 995, 1031, 1382
MslI CAYNNNNRTG 2 cut(s) 368, 1147
Msp20I TGGCCA 2 cut(s) 321, 965
MspA1I CMGCKG 1 cut(s) 601
MspI CCGG 7 cut(s) 435, 568, 709, 859, 864, 908, 1298
MspR9I CCNGG 7 cut(s) 332, 338, 709, 710, 908, 980, 1551
Mva1269I GAATGC 2 cut(s) 563, 1325
MvaI CCWGG 4 cut(s) 332, 338, 980, 1551
MwoI GCNNNNNNNGC 2 cut(s) 737, 1544
NciI CCSGG 3 cut(s) 709, 710, 908
NcoI CCATGG 2 cut(s) 316, 1148
NdeI CATATG 1 cut(s) 421
NdeII GATC 8 cut(s) 63, 549, 582, 793, 884, 1107, 1118, 1262
NlaIV GGNNCC 5 cut(s) 282, 387, 577, 906, 1237
NmuCI GTSAC 1 cut(s) 610
NspI RCATGY 1 cut(s) 1100
PaeR7I CTCGAG 1 cut(s) 380
PagI TCATGA 3 cut(s) 60, 160, 1586
PaqCI CACCTGC 1 cut(s) 745
PciI ACATGT 1 cut(s) 1096
PctI GAATGC 2 cut(s) 563, 1325
PfeI GAWTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 601
PfoI TCCNGGA 1 cut(s) 1549
PinAI ACCGGT 1 cut(s) 863
PkrI GCNGC 4 cut(s) 178, 307, 733, 781
PleI GAGTC 1 cut(s) 767
PpsI GAGTC 1 cut(s) 767
PpuMI RGGWCCY 2 cut(s) 281, 904
PscI ACATGT 1 cut(s) 1096
PsiI TTATAA 1 cut(s) 632
Psp124BI GAGCTC 1 cut(s) 297
Psp5II RGGWCCY 2 cut(s) 281, 904
Psp6I CCWGG 4 cut(s) 330, 336, 978, 1549
PspFI CCCAGC 2 cut(s) 545, 1494
PspGI CCWGG 4 cut(s) 330, 336, 978, 1549
PspN4I GGNNCC 5 cut(s) 282, 387, 577, 906, 1237
PspOMI GGGCCC 1 cut(s) 385
PspPPI RGGWCCY 2 cut(s) 281, 904
PspXI VCTCGAGB 1 cut(s) 380
PstNI CAGNNNCTG 1 cut(s) 737
PvuII CAGCTG 1 cut(s) 601
RsaI GTAC 3 cut(s) 222, 532, 1095
RsaNI GTAC 3 cut(s) 221, 531, 1094
RseI CAYNNNNRTG 2 cut(s) 368, 1147
Rsr2I CGGWCCG 1 cut(s) 861
RsrII CGGWCCG 1 cut(s) 861
SacI GAGCTC 1 cut(s) 297
SaqAI TTAA 5 cut(s) 27, 261, 995, 1031, 1382
SatI GCNGC 4 cut(s) 177, 306, 732, 780
Sau3AI GATC 8 cut(s) 63, 549, 582, 793, 884, 1107, 1118, 1262
ScaI AGTACT 1 cut(s) 222
SchI GAGTC 1 cut(s) 768
ScrFI CCNGG 7 cut(s) 332, 338, 709, 710, 908, 980, 1551
SduI GDGCHC 2 cut(s) 297, 389
SfaNI GCATC 2 cut(s) 708, 811
Sfr274I CTCGAG 1 cut(s) 380
SinI GGWCC 4 cut(s) 281, 575, 861, 904
SlaI CTCGAG 1 cut(s) 380
SmaI CCCGGG 1 cut(s) 710
SmiMI CAYNNNNRTG 2 cut(s) 368, 1147
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 9 cut(s) 92, 258, 634, 895, 959, 1112, 1179, 1398, 1406
SsiI CCGC 1 cut(s) 779
SspI AATATT 2 cut(s) 457, 1563
SspMI CTAG 3 cut(s) 309, 956, 1403
SstI GAGCTC 1 cut(s) 297
StyD4I CCNGG 7 cut(s) 330, 336, 707, 708, 906, 978, 1549
StyI CCWWGG 2 cut(s) 316, 1148
TaaI ACNGT 2 cut(s) 238, 301
TaiI ACGT 2 cut(s) 837, 1140
TaqI TCGA 1 cut(s) 381
TasI AATT 9 cut(s) 92, 258, 634, 895, 959, 1112, 1179, 1398, 1406
TatI WGTACW 1 cut(s) 220
TauI GCSGC 1 cut(s) 782
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 5 cut(s) 27, 261, 995, 1031, 1382
Tru9I TTAA 5 cut(s) 27, 261, 995, 1031, 1382
TscAI CASTG 2 cut(s) 412, 559
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 3 cut(s) 176, 305, 731
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 8 cut(s) 49, 50, 149, 177, 480, 656, 669, 1045
TspGWI ACGGA 3 cut(s) 1031, 1276, 1380
TspMI CCCGGG 1 cut(s) 708
TspRI CASTG 2 cut(s) 412, 559
Van91I CCANNNNNTGG 1 cut(s) 601
VpaK11BI GGWCC 4 cut(s) 281, 575, 861, 904
XapI RAATTY 3 cut(s) 1179, 1398, 1406
XbaI TCTAGA 1 cut(s) 1402
XceI RCATGY 1 cut(s) 1100
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XhoI CTCGAG 1 cut(s) 380
XmaI CCCGGG 1 cut(s) 708
XspI CTAG 3 cut(s) 309, 956, 1403
ZrmI AGTACT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.