Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0009908

Physical Location & Seq

Genomic Coordinates Forward (+)

4583891 .. 4584379

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0026900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGATGTCTCCAGGTCGACGGAGGCATCTAATGCCTACGGCCAATCAAACCTAACAAACAAACGATTGTTGCGCCGCAGATTGACTGCTCTATCCCAACAAATCAGAGAGATGAATGAGGTGACGGGAAGAAAAGCGACCCTCTTTTTTAAGACTGAGGACAACAAGTTCTTGCGTGTCAGTGGCGATCCCGACAACCCTATCTGTGAAGTCGAGGCATCCAATCAAGAGTTATTGGATTGGATGAAGCAAGCAAGAGAGGTAAAGAAGTTAGAGAAGCAGGTCGAAGCCGTTGGAAAGAAAAAACGTGAACAATTTGAGGAGCTGAAGAGTGATTTGGAGAAGCATTTTCTACAAATAGAGGAGGCTGCTTCTGATTCTGCCACCACCAGTAACAGCGAGTGTACTCGGCAAAGTAGAGATGGTAGCGCTACTGCTAGTGTTTCTTCTTCGGCTTGTTGTTCTGGATTAGGACGTCGACGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009653 GO:0009690 GO:0009791 GO:0009823 GO:0009888 GO:0009987 GO:0010016 GO:0010103 GO:0010374 GO:0010817 GO:0016491 GO:0016645 GO:0019139 GO:0032501 GO:0032502 GO:0034754 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048507 GO:0048731 GO:0048856 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0090558 GO:0090626 GO:0090698 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 map00908

Pfam Domains

Protein Families

Cytokin-bind FAD_binding_4

Protein Analysis

162

Amino Acids

18.27

Weight (kDa)

8.93

Isoelectric Point (pI)

70.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63440
fragaria_vesca	FvH4_3g03260 FvH4_7g02150 FvH4_7g02150
malus_domestica	MD07G1026600.v1.1
prunus_persica	Prupe.2G026700_v2.0.a1 Prupe.2G026700_v2.0.a1
pyrus_communis	pycom02g25060 pycom07g02010
rosa_chinensis	RchiOBHm_Chr1g0319331
rosa_laevigata	RLG00000030494
rosa_multiflora	Rmu_sc0003338.1_g000006 Rmu_sc0014506.1_g000010
rosa_roxburghii	Rroxscaffold_4G00328570
rosa_rugosa	Rorug01G0026800 Rorug01G0026900
rosa_samantha	Rh1AG039000 Rh1BG035800 Rh1CG038000 Rh1DG031900
rosa_wichuraiana	Rw1G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	478
Acc36I	ACCTGC	1 cut(s)	271
AccI	GTMKAC	2 cut(s)	17, 478
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	475
AfaI	GTAC	1 cut(s)	406
AfeI	AGCGCT	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	13
AlwI	GGATC	1 cut(s)	182
Aor51HI	AGCGCT	1 cut(s)	430
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	1 cut(s)	368
AspLEI	GCGC	2 cut(s)	75, 431
AsuHPI	GGTGA	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	2 cut(s)	55, 275
BciT130I	CCWGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	271
BisI	GCNGC	2 cut(s)	76, 369
BlsI	GCNGC	2 cut(s)	77, 370
Bme1390I	CCNGG	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	13
BmsI	GCATC	2 cut(s)	35, 227
BsaHI	GRCGYC	1 cut(s)	475
Bse1I	ACTGG	1 cut(s)	390
BseBI	CCWGG	1 cut(s)	13
BseGI	GGATG	3 cut(s)	10, 218, 249
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	2 cut(s)	335, 377
BseXI	GCAGC	1 cut(s)	355
BshFI	GGCC	1 cut(s)	42
BsmAI	GTCTC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	42
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	1 cut(s)	182
BsrI	ACTGG	1 cut(s)	390
BssMI	GATC	1 cut(s)	187
BssNI	GRCGYC	1 cut(s)	475
Bst2UI	CCWGG	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	323
BstACI	GRCGYC	1 cut(s)	475
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	3 cut(s)	10, 218, 249
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	2 cut(s)	75, 431
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	355
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	10, 218, 249
BtsIMutI	CAGTG	1 cut(s)	187
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	252
CfoI	GCGC	2 cut(s)	75, 431
Csp6I	GTAC	1 cut(s)	405
CviJI	RGCY	5 cut(s)	42, 290, 325, 368, 455
CviKI_1	RGCY	5 cut(s)	42, 290, 325, 368, 455
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
Eco47III	AGCGCT	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	11
FblI	GTMKAC	2 cut(s)	17, 478
Fnu4HI	GCNGC	2 cut(s)	76, 369
FokI	GGATG	3 cut(s)	17, 205, 256
Fsp4HI	GCNGC	2 cut(s)	76, 369
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	2 cut(s)	74, 430
GluI	GCNGC	2 cut(s)	76, 369
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	42
HhaI	GCGC	2 cut(s)	75, 431
Hin1I	GRCGYC	1 cut(s)	475
Hin6I	GCGC	2 cut(s)	73, 429
HinP1I	GCGC	2 cut(s)	73, 429
HincII	GTYRAC	2 cut(s)	18, 479
HindII	GTYRAC	2 cut(s)	18, 479
HinfI	GANTC	1 cut(s)	377
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	4 cut(s)	18, 311, 405, 479
Hpy188I	TCNGA	2 cut(s)	107, 376
Hpy188III	TCNNGA	3 cut(s)	191, 227, 465
Hpy8I	GTNNAC	4 cut(s)	18, 311, 405, 479
Hpy99I	CGWCG	3 cut(s)	22, 480, 483
HpyCH4IV	ACGT	3 cut(s)	307, 475, 481
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	3 cut(s)	307, 475, 481
Hsp92I	GRCGYC	1 cut(s)	475
HspAI	GCGC	2 cut(s)	73, 429
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	4 cut(s)	25, 266, 403, 450
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	2 cut(s)	35, 227
MaeI	CTAG	1 cut(s)	438
MaeII	ACGT	3 cut(s)	307, 475, 481
MaeIII	GTNAC	2 cut(s)	121, 392
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	4 cut(s)	141, 340, 438, 441
MluCI	AATT	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	9 cut(s)	16, 112, 151, 152, 208, 253, 313, 355, 358
MseI	TTAA	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	32
NdeII	GATC	1 cut(s)	187
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	377
PkrI	GCNGC	2 cut(s)	77, 370
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
SalI	GTCGAC	2 cut(s)	16, 477
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	2 cut(s)	76, 369
Sau3AI	GATC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	13
SetI	ASST	9 cut(s)	17, 54, 123, 264, 285, 310, 327, 478, 484
SfaNI	GCATC	2 cut(s)	35, 227
SgrDI	CGTCGACG	1 cut(s)	477
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	1 cut(s)	76
SspMI	CTAG	1 cut(s)	438
StyD4I	CCNGG	1 cut(s)	11
TaiI	ACGT	3 cut(s)	310, 478, 484
TaqI	TCGA	4 cut(s)	17, 213, 285, 478
TasI	AATT	1 cut(s)	314
TatI	WGTACW	1 cut(s)	404
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	2 cut(s)	128, 260
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	187
XmiI	GTMKAC	2 cut(s)	17, 478
XspI	CTAG	1 cut(s)	438
ZraI	GACGTC	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.