Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009908

Physical Location & Seq

Genomic Coordinates Reverse (-)

1614158 .. 1615412

Gene Structure 1255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g02010.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAGGTATCCACCCATTTACTTCCTCAAACAAATGAACATGCTTATCATCGAAGGCTTCATGGTCTTGCTTGTGAGCTGCTTAACCATTAGAACGAACCTTTGTTCTCCAAACACTCCTTCGTTGAAAACACTTCCCCTCCATGGGCATTTCGACTTCCATGAAGTTCACCATGCAGCTAGAGATTTCGGCAACAGATATCAGTTCCTCCCTGTGGCAGTGCTGCATCCAAAGACCGTTTCAGACATTGCTACTATAGTTAAGCATGTTTGGGAGTTGGGTCCTGGTTCGGAGCTCACAGTTTCAGCTAGAGGCCATGGTCACTCGCTCCAGGGCCAGTCACAAGCCCACCGTGGAGTTGTCATCAATATGGAATCACTCAAAGGCCCTCAAATCCAGATTCACACCGGAAGTTCTCCATACGTGGATGCCTCTGGTGGTGAATTGTGGATAAATATCCTGCATGAAAGCTTGAAATATGGGTTAGCGCCAAAATCATGGACCGACTACTTACATCTAACTATTGGTGGTACTCTGTCTAATGCTGGGATCAGTGGGCAGGCATTCCGGCATGGCCCGCAGATCAGCAATGTCCACCAGCTGGAAGTTGTTACAGGAAAGGGGGAGGTTGTAAATTGTTCAGAGGAGCAGAATGAAGACCTATTTCATAGTGTTCTTGGAGGGCTCGGTCAGTTTGGCATCATAACACGGGCAAGAATATTGCTGGAAGCAGCACCTGCAAGGGTAAAATGGATTAGAGTCCTGTATTCAGATTTCACAGCATTTACCCAAGATCAGGAGCATCTAATGTCTGCAGAAAATAAGTTTGACTACATCGAAGGATTCGTGATAATAAACAGGACCGGTCTGCTAAACAACTGGAGATCGATCCTTCAATTCAAAGGACCCAGTTCAGGCCAGCCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009308 GO:0009653 GO:0009690 GO:0009791 GO:0009823 GO:0009888 GO:0009987 GO:0010016 GO:0010103 GO:0010374 GO:0010817 GO:0016491 GO:0016645 GO:0019139 GO:0032501 GO:0032502 GO:0034754 GO:0042445 GO:0042447 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048367 GO:0048507 GO:0048731 GO:0048856 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0090558 GO:0090626 GO:0090698 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00908 map00908

Pfam Domains

Protein Families

Cytokin-bind FAD_binding_4

Protein Analysis

310

Amino Acids

34.29

Weight (kDa)

7.0

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009908)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63440
fragaria_vesca	FvH4_3g03260 FvH4_7g02150 FvH4_7g02150
malus_domestica	MD07G1026600.v1.1
prunus_persica	Prupe.2G026700_v2.0.a1 Prupe.2G026700_v2.0.a1
pyrus_communis	pycom02g25060 pycom07g02010
rosa_chinensis	RchiOBHm_Chr1g0319331
rosa_laevigata	RLG00000030494
rosa_multiflora	Rmu_sc0003338.1_g000006 Rmu_sc0014506.1_g000010
rosa_roxburghii	Rroxscaffold_4G00328570
rosa_rugosa	Rorug01G0026800 Rorug01G0026900
rosa_samantha	Rh1AG039000 Rh1BG035800 Rh1CG038000 Rh1DG031900
rosa_wichuraiana	Rw1G003120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	745
Acc36I	ACCTGC	1 cut(s)	745
AccB7I	CCANNNNNTGG	1 cut(s)	601
AciI	CCGC	1 cut(s)	578
AclWI	GGATC	2 cut(s)	557, 883
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	6 cut(s)	143, 144, 214, 601, 796, 914
AgeI	ACCGGT	1 cut(s)	863
AgsI	TTSAA	4 cut(s)	127, 475, 896, 901
AjnI	CCWGG	2 cut(s)	283, 330
AjuI	GAANNNNNNNTTGG	4 cut(s)	103, 135, 223, 255
AluBI	AGCT	6 cut(s)	78, 179, 295, 308, 471, 601
AluI	AGCT	6 cut(s)	78, 179, 295, 308, 471, 601
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	557, 883
AlwNI	CAGNNNCTG	1 cut(s)	737
AoxI	GGCC	5 cut(s)	313, 334, 385, 574, 916
ApeKI	GCWGC	4 cut(s)	78, 176, 223, 731
AsiGI	ACCGGT	1 cut(s)	863
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	7 cut(s)	281, 334, 386, 501, 575, 861, 905
AsuHPI	GGTGA	2 cut(s)	161, 452
AvaII	GGWCC	4 cut(s)	281, 501, 861, 905
BanII	GRGCYC	2 cut(s)	297, 687
BbsI	GAAGAC	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	4 cut(s)	65, 188, 210, 743
BciT130I	CCWGG	2 cut(s)	285, 332
BciVI	GTATCC	1 cut(s)	18
BfaI	CTAG	2 cut(s)	180, 309
BfmI	CTRYAG	2 cut(s)	255, 813
BfoI	RGCGCY	1 cut(s)	491
BfuAI	ACCTGC	1 cut(s)	745
BfuI	GTATCC	1 cut(s)	18
BisI	GCNGC	4 cut(s)	79, 177, 224, 732
BlsI	GCNGC	4 cut(s)	80, 178, 225, 733
Bme1390I	CCNGG	2 cut(s)	285, 332
Bme18I	GGWCC	4 cut(s)	281, 501, 861, 905
BmgT120I	GGNCC	7 cut(s)	281, 334, 386, 501, 575, 861, 905
BmiI	GGNNCC	2 cut(s)	282, 907
BmrFI	CCNGG	2 cut(s)	285, 332
BmrI	ACTGGG	1 cut(s)	903
BmsI	GCATC	4 cut(s)	235, 418, 708, 811
BmuI	ACTGGG	1 cut(s)	903
BpiI	GAAGAC	1 cut(s)	663
BpmI	CTGGAG	2 cut(s)	314, 901
Bsa29I	ATCGAT	1 cut(s)	887
BsaAI	YACGTR	1 cut(s)	424
BsaBI	GATNNNNATC	1 cut(s)	455
BsaJI	CCNNGG	4 cut(s)	142, 316, 331, 352
BsaWI	WCCGGW	2 cut(s)	407, 863
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	6 cut(s)	143, 144, 214, 601, 796, 914
Bse118I	RCCGGY	1 cut(s)	863
Bse1I	ACTGG	4 cut(s)	337, 884, 909, 923
Bse3DI	GCAATG	2 cut(s)	246, 595
Bse8I	GATNNNNATC	1 cut(s)	455
BseBI	CCWGG	2 cut(s)	285, 332
BseCI	ATCGAT	1 cut(s)	887
BseDI	CCNNGG	4 cut(s)	142, 316, 331, 352
BseGI	GGATG	2 cut(s)	226, 433
BseJI	GATNNNNATC	1 cut(s)	455
BseLI	CCNNNNNNNGG	6 cut(s)	143, 144, 214, 601, 796, 914
BseMI	GCAATG	2 cut(s)	246, 595
BseNI	ACTGG	4 cut(s)	337, 884, 909, 923
BseRI	GAGGAG	1 cut(s)	659
BseXI	GCAGC	4 cut(s)	65, 188, 210, 743
BseYI	CCCAGC	1 cut(s)	545
BshFI	GGCC	5 cut(s)	315, 336, 387, 576, 918
BshTI	ACCGGT	1 cut(s)	863
BshVI	ATCGAT	1 cut(s)	887
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	408, 568, 864
BslI	CCNNNNNNNGG	6 cut(s)	143, 144, 214, 601, 796, 914
BsmI	GAATGC	1 cut(s)	563
BsnI	GGCC	5 cut(s)	315, 336, 387, 576, 918
Bsp1286I	GDGCHC	2 cut(s)	297, 687
Bsp143I	GATC	5 cut(s)	549, 582, 793, 884, 888
Bsp19I	CCATGG	2 cut(s)	142, 316
BspACI	CCGC	1 cut(s)	578
BspANI	GGCC	5 cut(s)	315, 336, 387, 576, 918
BspDI	ATCGAT	1 cut(s)	887
BspLI	GGNNCC	2 cut(s)	282, 907
BspMAI	CTGCAG	1 cut(s)	817
BspMI	ACCTGC	1 cut(s)	745
BspPI	GGATC	2 cut(s)	557, 883
BsrDI	GCAATG	2 cut(s)	246, 595
BsrFI	RCCGGY	1 cut(s)	863
BsrI	ACTGG	4 cut(s)	337, 884, 909, 923
BssAI	RCCGGY	1 cut(s)	863
BssECI	CCNNGG	4 cut(s)	142, 316, 331, 352
BssMI	GATC	5 cut(s)	549, 582, 793, 884, 888
BssT1I	CCWWGG	2 cut(s)	142, 316
Bst2UI	CCWGG	2 cut(s)	285, 332
Bst4CI	ACNGT	3 cut(s)	238, 301, 353
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstBAI	YACGTR	1 cut(s)	424
BstC8I	GCNNGC	3 cut(s)	561, 578, 920
BstDSI	CCRYGG	3 cut(s)	142, 316, 352
BstF5I	GGATG	2 cut(s)	226, 433
BstH2I	RGCGCY	1 cut(s)	491
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	5 cut(s)	552, 585, 796, 887, 891
BstMBI	GATC	5 cut(s)	549, 582, 793, 884, 888
BstMWI	GCNNNNNNNGC	2 cut(s)	577, 737
BstNI	CCWGG	2 cut(s)	285, 332
BstNSI	RCATGY	2 cut(s)	43, 269
BstSCI	CCNGG	2 cut(s)	283, 330
BstSFI	CTRYAG	2 cut(s)	255, 813
BstV1I	GCAGC	4 cut(s)	65, 188, 210, 743
BstV2I	GAAGAC	1 cut(s)	663
BstXI	CCANNNNNNTGG	1 cut(s)	498
Bsu15I	ATCGAT	1 cut(s)	887
BsuI	GTATCC	1 cut(s)	18
BsuRI	GGCC	5 cut(s)	315, 336, 387, 576, 918
BsuTUI	ATCGAT	1 cut(s)	887
BtgI	CCRYGG	3 cut(s)	142, 316, 352
BtsCI	GGATG	2 cut(s)	226, 433
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	2 cut(s)	225, 559
BveI	ACCTGC	1 cut(s)	745
Cac8I	GCNNGC	3 cut(s)	561, 578, 920
CaiI	CAGNNNCTG	1 cut(s)	737
CfoI	GCGC	1 cut(s)	490
Cfr10I	RCCGGY	1 cut(s)	863
Cfr13I	GGNCC	7 cut(s)	281, 334, 386, 501, 575, 861, 905
ClaI	ATCGAT	1 cut(s)	887
Csp6I	GTAC	1 cut(s)	531
CspAI	ACCGGT	1 cut(s)	863
CviQI	GTAC	1 cut(s)	531
DpnI	GATC	5 cut(s)	551, 584, 795, 886, 890
DpnII	GATC	5 cut(s)	549, 582, 793, 884, 888
Ecl136II	GAGCTC	1 cut(s)	295
Eco130I	CCWWGG	2 cut(s)	142, 316
Eco24I	GRGCYC	2 cut(s)	297, 687
Eco32I	GATATC	1 cut(s)	200
Eco47I	GGWCC	4 cut(s)	281, 501, 861, 905
Eco53kI	GAGCTC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	295
EcoO109I	RGGNCCY	3 cut(s)	281, 386, 905
EcoRII	CCWGG	2 cut(s)	283, 330
EcoRV	GATATC	1 cut(s)	200
EcoT14I	CCWWGG	2 cut(s)	142, 316
EcoT38I	GRGCYC	2 cut(s)	297, 687
ErhI	CCWWGG	2 cut(s)	142, 316
FauI	CCCGC	1 cut(s)	585
Fnu4HI	GCNGC	4 cut(s)	79, 177, 224, 732
FokI	GGATG	2 cut(s)	213, 440
FriOI	GRGCYC	2 cut(s)	297, 687
Fsp4HI	GCNGC	4 cut(s)	79, 177, 224, 732
FspBI	CTAG	2 cut(s)	180, 309
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	4 cut(s)	79, 177, 224, 732
GsaI	CCCAGC	1 cut(s)	549
GsuI	CTGGAG	2 cut(s)	314, 901
HaeII	RGCGCY	1 cut(s)	491
HaeIII	GGCC	5 cut(s)	315, 336, 387, 576, 918
HapII	CCGG	3 cut(s)	408, 568, 864
HhaI	GCGC	1 cut(s)	490
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	4 cut(s)	374, 400, 759, 843
HpaII	CCGG	3 cut(s)	408, 568, 864
HphI	GGTGA	2 cut(s)	161, 452
Hpy166II	GTNNAC	2 cut(s)	169, 595
Hpy188I	TCNGA	4 cut(s)	244, 292, 643, 772
Hpy188III	TCNNGA	3 cut(s)	397, 797, 847
Hpy8I	GTNNAC	2 cut(s)	169, 595
HpyAV	CCTTC	4 cut(s)	47, 129, 833, 902
HpyCH4III	ACNGT	3 cut(s)	238, 301, 353
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	5 cut(s)	176, 226, 463, 740, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	577, 737
HpySE526I	ACGT	1 cut(s)	423
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	5 cut(s)	549, 582, 793, 884, 888
LmnI	GCTCC	4 cut(s)	292, 333, 646, 799
Lsp1109I	GCAGC	4 cut(s)	65, 188, 210, 743
LweI	GCATC	4 cut(s)	235, 418, 708, 811
MaeI	CTAG	2 cut(s)	180, 309
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	3 cut(s)	320, 339, 610
MalI	GATC	5 cut(s)	551, 584, 795, 886, 890
MboI	GATC	5 cut(s)	549, 582, 793, 884, 888
MboII	GAAGA	1 cut(s)	668
MhlI	GDGCHC	2 cut(s)	297, 687
MluCI	AATT	3 cut(s)	443, 634, 896
MlyI	GAGTC	1 cut(s)	768
MnlI	CCTC	9 cut(s)	35, 149, 218, 305, 399, 442, 619, 637, 674
MseI	TTAA	3 cut(s)	83, 261, 928
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	601
MspI	CCGG	3 cut(s)	408, 568, 864
MspR9I	CCNGG	2 cut(s)	285, 332
Mva1269I	GAATGC	1 cut(s)	563
MvaI	CCWGG	2 cut(s)	285, 332
MwoI	GCNNNNNNNGC	2 cut(s)	577, 737
NcoI	CCATGG	2 cut(s)	142, 316
NdeII	GATC	5 cut(s)	549, 582, 793, 884, 888
NlaIV	GGNNCC	2 cut(s)	282, 907
NmuCI	GTSAC	2 cut(s)	320, 339
NspI	RCATGY	2 cut(s)	43, 269
PaqCI	CACCTGC	1 cut(s)	745
PcsI	WCGNNNNNNNCGW	1 cut(s)	843
PctI	GAATGC	1 cut(s)	563
PfeI	GAWTC	3 cut(s)	374, 400, 843
PflMI	CCANNNNNTGG	1 cut(s)	601
PinAI	ACCGGT	1 cut(s)	863
PkrI	GCNGC	4 cut(s)	80, 178, 225, 733
PleI	GAGTC	1 cut(s)	767
PpsI	GAGTC	1 cut(s)	767
Ppu21I	YACGTR	1 cut(s)	424
PpuMI	RGGWCCY	2 cut(s)	281, 905
Psp124BI	GAGCTC	1 cut(s)	297
Psp5II	RGGWCCY	2 cut(s)	281, 905
Psp6I	CCWGG	2 cut(s)	283, 330
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	2 cut(s)	283, 330
PspN4I	GGNNCC	2 cut(s)	282, 907
PspPI	GGNCC	7 cut(s)	281, 334, 386, 501, 575, 861, 905
PspPPI	RGGWCCY	2 cut(s)	281, 905
PstI	CTGCAG	1 cut(s)	817
PstNI	CAGNNNCTG	1 cut(s)	737
PvuII	CAGCTG	1 cut(s)	601
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
RseI	CAYNNNNRTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	83, 261, 928
SatI	GCNGC	4 cut(s)	79, 177, 224, 732
Sau3AI	GATC	5 cut(s)	549, 582, 793, 884, 888
Sau96I	GGNCC	7 cut(s)	281, 334, 386, 501, 575, 861, 905
SchI	GAGTC	1 cut(s)	768
ScrFI	CCNGG	2 cut(s)	285, 332
SduI	GDGCHC	2 cut(s)	297, 687
SfaNI	GCATC	4 cut(s)	235, 418, 708, 811
SfcI	CTRYAG	2 cut(s)	255, 813
SinI	GGWCC	4 cut(s)	281, 501, 861, 905
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	3 cut(s)	443, 634, 896
SsiI	CCGC	1 cut(s)	578
SspI	AATATT	1 cut(s)	720
SspMI	CTAG	2 cut(s)	180, 309
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	283, 330
StyI	CCWWGG	2 cut(s)	142, 316
TaaI	ACNGT	3 cut(s)	238, 301, 353
TaiI	ACGT	1 cut(s)	426
TaqI	TCGA	4 cut(s)	51, 153, 837, 887
TaqII	GACCGA	2 cut(s)	518, 677
TasI	AATT	3 cut(s)	443, 634, 896
TfiI	GAWTC	3 cut(s)	374, 400, 843
Tru1I	TTAA	3 cut(s)	83, 261, 928
Tru9I	TTAA	3 cut(s)	83, 261, 928
TscAI	CASTG	2 cut(s)	225, 559
TseFI	GTSAC	2 cut(s)	320, 339
TseI	GCWGC	4 cut(s)	78, 176, 223, 731
Tsp45I	GTSAC	2 cut(s)	320, 339
TspDTI	ATGAA	6 cut(s)	49, 50, 177, 480, 656, 669
TspRI	CASTG	2 cut(s)	225, 559
Van91I	CCANNNNNTGG	1 cut(s)	601
VpaK11BI	GGWCC	4 cut(s)	281, 501, 861, 905
XceI	RCATGY	2 cut(s)	43, 269
XspI	CTAG	2 cut(s)	180, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.