Prupe.2G206500_v2.0.a1

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015691
Physical Location & Seq
Reverse (-)
24075940 .. 24078660
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G206500.1

Sequence Viewer

Length: 1731 bp
ATGGGGGTTCATGGCACTTGGGCAGACATCAAAGGCTTTGCTCTCCAAGTTCTTACAGGCCGGTGGCTCATGCTGTTTGCCTCATTTCTAATGATGGCTAGTGCTGGTGCAAGCTACATGTTTGGCCTCTACTCAAATGACATCAAATCTGTCCTTGGCTACAACCAATCCACCCTCAACATGATCAGCTTCTTCAAGGACTTGGGGGCCAACATTGGCATCTTCTCTGGCCTTATCAATGAAGTCACACCCCCGTGGGTGGTCTTATCAATTGGTGCAGCATTCAACTTTTTTGGGTACTTCATGATATGGCTTGCCGTGACAGAAAAAATAGCCAAGCCCCAAGTCTGGCACATGTGCTTGTACATCACAATGGGAGCAAATTCACATACTTTCATCAACACAGGAGCTTTCGTCACATGTGTAAAGAACTTCCCGAGAAGCCGCGGCCTCTTGATCGGGCTTTTGAATGGCTACATTGGCCTGAGTGCAGCTGTGATTGCACAGCTATACCATGCTTTCTATGGTGATGACACAAAGTCCTTCACTTTGTTTGTGGCATGGCTTCCTTCAGCTGTTTCTCTGATATTTCTTCGTACGATTCGGATAATGAAGGTTATACCGCAGAAGAGATATTACAAGGTGTTATGTAAATTCCTCTATATCTCACTTGGATTGGCAGGGTACTTGTTAATTATAATCATAGTAGAGCAAAAGGTGAATTTCAGACAAATTGAGTATGGTGGAAGTGCAGCTATAGTGCTTTTCTTGCTCTTTCTCCCACTTGCTGTTGTTGTTGCAGAAGAGTATATTTCTTGGAGGACCAAGCAATCTTTGAGCACTGCAAATATTGAAATTCCATCACCAGATTCAACCCATGTGGACCAAAACAAGCTTTCTTGTTGGAAACATGTGTTTAGTCCACCAGAGATAGGAGAAGACCACACAATACTCCAAGCAGTGTTCAGCATTGAGATGTTGACTTTGTTCTTGACCACATTGTGTGGCCTAGGTGGCATGTTGACAATGATGGACAATTTGGGTCAGATTGGAACTGCCCTAGGATACTCCTTGGAAAGCATAAGCACTTTTGTGTCACTCGCAAGCATATGGATTTACCTTGGAGAAGTAATGGTGGGTTTGCTCTCAGAAATCTTTATCACAAAGTACAAATGTCCAAGGCCTCTCATGTTCACTTTCTCCCTTTTTCTGTCCTGCATTGGTCACCTTCTAATTGCCTTCAATGTCCCAAATGGTCTCTATGTAGCTTCAATAATCACAGGGTTTTGCTTTGGTGGGGTATGGCCTTTGCTTTTTTCAATAATTTCTGAGATTTTCGGGCTCAAGCATATCTCTACGCTCAACAATGTTGGGGCAATGGCTTGCCCACTTGGGTCATATTTGCTTAATGTGAAGGTCACAGGGTATCTTTATGATAGGGAGGCAGAGAAGCAATTGAGAGCTTTGGGATTGGAAAGGAAGCCTGGGGAGGAGTTGAATTGCAGTGGAGGGCAATGCTTCAAATTACCCTTCATTATAATCACTGCAGTGACATTGCTTGGTGTGCTTGTTTCCCTGGTTTTGGTGTTTAGGACTAGGAAGTTTTATAACAGTGACATTTATAAAAAGTTCAAAGATGAGAAAAGAGCAGCAGAGTCTGAAACAGTGGTGACCAAAAACCCAAATGTTGGGCTAGCGAAGTTGGAAGCTGAGATTGATTTAAAAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 Nodulin-like

Protein Analysis

577

Amino Acids

63.91

Weight (kDa)

8.77

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015691)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18460 FvH4_7g18460
malus_domestica MD01G1101300.v1.1
prunus_persica Prupe.2G206500_v2.0.a1
pyrus_communis pycom01g12790
rosa_chinensis RchiOBHm_Chr1g0362271
rosa_laevigata RLG00000027660
rosa_multiflora Rmu_sc0001237.1_g000019 Rmu_ssc0000009.1_g000005
rosa_roxburghii Rroxscaffold_4G00294320 Rroxscaffold_4G00294340
rosa_rugosa Rorug01G0296500
rosa_samantha Rh1AG305500 Rh1BG268700 Rh1CG286700 Rh1DG298800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 698, 1538, 1608, 1623
AccB7I CCANNNNNTGG 1 cut(s) 1688
AccII CGCG 1 cut(s) 447
AciI CCGC 3 cut(s) 445, 447, 623
AcsI RAATTY 4 cut(s) 382, 653, 721, 855
AcuI CTGAAG 1 cut(s) 555
AdeI CACNNNGTG 1 cut(s) 1002
AfaI GTAC 5 cut(s) 299, 365, 598, 686, 1169
AfiI CCNNNNNNNGG 5 cut(s) 259, 348, 932, 1582, 1688
AflIII ACRYGT 4 cut(s) 117, 354, 419, 910
AhdI GACNNNNNGTC 1 cut(s) 538
AjnI CCWGG 2 cut(s) 1483, 1575
AleI CACNNNNGTG 3 cut(s) 253, 1091, 1547
Alw21I GWGCWC 1 cut(s) 842
Alw26I GTCTC 1 cut(s) 1262
AlwNI CAGNNNCTG 1 cut(s) 1658
Ama87I CYCGRG 1 cut(s) 436
AoxI GGCC 9 cut(s) 58, 124, 207, 229, 448, 481, 1006, 1181, 1304
ApeKI GCWGC 4 cut(s) 278, 491, 752, 1649
ApoI RAATTY 4 cut(s) 382, 653, 721, 855
AspA2I CCTAGG 2 cut(s) 1009, 1060
AspS9I GGNCC 3 cut(s) 207, 822, 883
AsuHPI GGTGA 5 cut(s) 539, 730, 855, 1217, 1681
AsuNHI GCTAGC 1 cut(s) 1693
AvaI CYCGRG 1 cut(s) 436
AvaII GGWCC 2 cut(s) 822, 883
AvrII CCTAGG 2 cut(s) 1009, 1060
BanII GRGCYC 1 cut(s) 1344
BarI GAAGNNNNNNTAC 2 cut(s) 620, 652
BbsI GAAGAC 1 cut(s) 945
Bbv12I GWGCWC 1 cut(s) 842
BbvI GCAGC 4 cut(s) 290, 503, 764, 1661
BccI CCATC 3 cut(s) 88, 868, 1024
BceAI ACGGC 1 cut(s) 302
BciT130I CCWGG 2 cut(s) 1485, 1577
BciVI GTATCC 1 cut(s) 1058
BclI TGATCA 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 1262
BfaI CTAG 5 cut(s) 99, 1010, 1061, 1596, 1694
BfmI CTRYAG 2 cut(s) 756, 1545
BfuI GTATCC 1 cut(s) 1058
BglI GCCNNNNNGGC 1 cut(s) 1014
BisI GCNGC 6 cut(s) 279, 445, 448, 492, 753, 1650
BlnI CCTAGG 2 cut(s) 1009, 1060
BlsI GCNGC 6 cut(s) 280, 446, 449, 493, 754, 1651
Bme1390I CCNGG 2 cut(s) 1485, 1577
Bme18I GGWCC 2 cut(s) 822, 883
BmeRI GACNNNNNGTC 1 cut(s) 538
BmeT110I CYCGRG 1 cut(s) 436
BmgT120I GGNCC 3 cut(s) 207, 822, 883
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 2 cut(s) 1485, 1577
BmsI GCATC 1 cut(s) 228
BmtI GCTAGC 1 cut(s) 1697
BpiI GAAGAC 1 cut(s) 945
BpuEI CTTGAG 1 cut(s) 1328
BsaI GGTCTC 1 cut(s) 1262
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 5 cut(s) 259, 348, 932, 1582, 1688
Bse118I RCCGGY 1 cut(s) 60
Bse3DI GCAATG 3 cut(s) 1383, 1520, 1553
BseBI CCWGG 2 cut(s) 1485, 1577
BseLI CCNNNNNNNGG 5 cut(s) 259, 348, 932, 1582, 1688
BseMI GCAATG 3 cut(s) 1383, 1520, 1553
BseMII CTCAG 4 cut(s) 476, 1161, 1320, 1701
BseRI GAGGAG 1 cut(s) 1505
BseXI GCAGC 4 cut(s) 290, 503, 764, 1661
BsgI GTGCAG 3 cut(s) 297, 510, 771
Bsh1236I CGCG 1 cut(s) 447
BshFI GGCC 9 cut(s) 60, 126, 209, 231, 450, 483, 1008, 1183, 1306
BsiHKAI GWGCWC 1 cut(s) 842
BsiHKCI CYCGRG 1 cut(s) 436
BsiSI CCGG 1 cut(s) 61
BsiWI CGTACG 1 cut(s) 596
BslFI GGGAC 1 cut(s) 1232
BslI CCNNNNNNNGG 5 cut(s) 259, 348, 932, 1582, 1688
BsmAI GTCTC 1 cut(s) 1262
BsmFI GGGAC 1 cut(s) 1232
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 9 cut(s) 60, 126, 209, 231, 450, 483, 1008, 1183, 1306
Bso31I GGTCTC 1 cut(s) 1262
BsoBI CYCGRG 1 cut(s) 436
Bsp1286I GDGCHC 2 cut(s) 842, 1344
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 2 cut(s) 183, 456
BspACI CCGC 3 cut(s) 445, 447, 623
BspANI GGCC 9 cut(s) 60, 126, 209, 231, 450, 483, 1008, 1183, 1306
BspCNI CTCAG 4 cut(s) 477, 1160, 1321, 1702
BspFNI CGCG 1 cut(s) 447
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 1549
BspOI GCTAGC 1 cut(s) 1697
BspTNI GGTCTC 1 cut(s) 1262
BsrDI GCAATG 3 cut(s) 1383, 1520, 1553
BsrFI RCCGGY 1 cut(s) 60
BsrGI TGTACA 1 cut(s) 363
BssAI RCCGGY 1 cut(s) 60
BssMI GATC 2 cut(s) 183, 456
BssT1I CCWWGG 6 cut(s) 154, 1009, 1060, 1071, 1120, 1178
Bst2UI CCWGG 2 cut(s) 1485, 1577
Bst4CI ACNGT 2 cut(s) 1613, 1666
Bst6I CTCTTC 2 cut(s) 623, 798
BstAUI TGTACA 1 cut(s) 363
BstC8I GCNNGC 5 cut(s) 112, 315, 1105, 1384, 1695
BstDEI CTNAG 4 cut(s) 485, 1147, 1329, 1710
BstDSI CCRYGG 2 cut(s) 254, 445
BstEII GGTNACC 2 cut(s) 1223, 1669
BstFNI CGCG 1 cut(s) 447
BstKTI GATC 2 cut(s) 186, 459
BstMAI GTCTC 1 cut(s) 1262
BstMBI GATC 2 cut(s) 183, 456
BstMWI GCNNNNNNNGC 5 cut(s) 480, 500, 769, 1014, 1564
BstNI CCWGG 2 cut(s) 1485, 1577
BstNSI RCATGY 5 cut(s) 121, 358, 423, 914, 1021
BstPI GGTNACC 2 cut(s) 1223, 1669
BstSCI CCNGG 2 cut(s) 1483, 1575
BstSFI CTRYAG 2 cut(s) 756, 1545
BstUI CGCG 1 cut(s) 447
BstV1I GCAGC 4 cut(s) 290, 503, 764, 1661
BstV2I GAAGAC 1 cut(s) 945
BsuI GTATCC 1 cut(s) 1058
BsuRI GGCC 9 cut(s) 60, 126, 209, 231, 450, 483, 1008, 1183, 1306
BtgI CCRYGG 2 cut(s) 254, 445
BtsI GCAGTG 5 cut(s) 840, 966, 1510, 1542, 1554
BtsIMutI CAGTG 7 cut(s) 840, 966, 1510, 1542, 1554, 1618, 1671
Cac8I GCNNGC 5 cut(s) 112, 315, 1105, 1384, 1695
CaiI CAGNNNCTG 1 cut(s) 1658
CciI TCATGA 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 3 cut(s) 207, 822, 883
Cfr42I CCGCGG 1 cut(s) 448
Csp6I GTAC 5 cut(s) 298, 364, 597, 685, 1168
CspCI CAANNNNNGTGG 2 cut(s) 861, 896
CviQI GTAC 5 cut(s) 298, 364, 597, 685, 1168
DdeI CTNAG 4 cut(s) 485, 1147, 1329, 1710
DpnI GATC 2 cut(s) 185, 458
DpnII GATC 2 cut(s) 183, 456
DraI TTTAAA 1 cut(s) 1722
DraIII CACNNNGTG 1 cut(s) 1002
DriI GACNNNNNGTC 1 cut(s) 538
Eam1104I CTCTTC 2 cut(s) 623, 798
Eam1105I GACNNNNNGTC 1 cut(s) 538
EarI CTCTTC 2 cut(s) 623, 798
Eco130I CCWWGG 6 cut(s) 154, 1009, 1060, 1071, 1120, 1178
Eco147I AGGCCT 1 cut(s) 1183
Eco24I GRGCYC 1 cut(s) 1344
Eco31I GGTCTC 1 cut(s) 1262
Eco47I GGWCC 2 cut(s) 822, 883
Eco57I CTGAAG 1 cut(s) 555
Eco88I CYCGRG 1 cut(s) 436
Eco91I GGTNACC 2 cut(s) 1223, 1669
EcoO65I GGTNACC 2 cut(s) 1223, 1669
EcoRII CCWGG 2 cut(s) 1483, 1575
EcoT14I CCWWGG 6 cut(s) 154, 1009, 1060, 1071, 1120, 1178
EcoT38I GRGCYC 1 cut(s) 1344
ErhI CCWWGG 6 cut(s) 154, 1009, 1060, 1071, 1120, 1178
FaqI GGGAC 1 cut(s) 1232
FauNDI CATATG 1 cut(s) 1109
FbaI TGATCA 1 cut(s) 183
Fnu4HI GCNGC 6 cut(s) 279, 445, 448, 492, 753, 1650
FriOI GRGCYC 1 cut(s) 1344
Fsp4HI GCNGC 6 cut(s) 279, 445, 448, 492, 753, 1650
FspBI CTAG 5 cut(s) 99, 1010, 1061, 1596, 1694
GluI GCNGC 6 cut(s) 279, 445, 448, 492, 753, 1650
HaeIII GGCC 9 cut(s) 60, 126, 209, 231, 450, 483, 1008, 1183, 1306
HapII CCGG 1 cut(s) 61
HincII GTYRAC 2 cut(s) 981, 1023
HindII GTYRAC 2 cut(s) 981, 1023
HindIII AAGCTT 1 cut(s) 893
HinfI GANTC 3 cut(s) 601, 869, 1655
HpaII CCGG 1 cut(s) 61
HphI GGTGA 5 cut(s) 539, 730, 855, 1217, 1681
Hpy166II GTNNAC 5 cut(s) 883, 923, 981, 1023, 1194
Hpy188I TCNGA 7 cut(s) 585, 606, 728, 1047, 1150, 1330, 1660
Hpy188III TCNNGA 4 cut(s) 304, 436, 454, 991
Hpy8I GTNNAC 5 cut(s) 883, 923, 981, 1023, 1194
HpyAV CCTTC 7 cut(s) 553, 579, 607, 1238, 1249, 1408, 1540
HpyCH4III ACNGT 2 cut(s) 1613, 1666
HpyF10VI GCNNNNNNNGC 5 cut(s) 480, 500, 769, 1014, 1564
HpyF3I CTNAG 4 cut(s) 485, 1147, 1329, 1710
Ksp22I TGATCA 1 cut(s) 183
KspI CCGCGG 1 cut(s) 448
Kzo9I GATC 2 cut(s) 183, 456
LmnI GCTCC 2 cut(s) 377, 407
Lsp1109I GCAGC 4 cut(s) 290, 503, 764, 1661
LweI GCATC 1 cut(s) 228
MaeI CTAG 5 cut(s) 99, 1010, 1061, 1596, 1694
MaeIII GTNAC 9 cut(s) 244, 319, 415, 1095, 1223, 1417, 1549, 1613, 1669
MalI GATC 2 cut(s) 185, 458
MboI GATC 2 cut(s) 183, 456
MboII GAAGA 6 cut(s) 184, 214, 584, 640, 815, 950
MfeI CAATTG 2 cut(s) 270, 1454
MhlI GDGCHC 2 cut(s) 842, 1344
MlyI GAGTC 1 cut(s) 1664
MmeI TCCRAC 2 cut(s) 884, 1683
MseI TTAA 3 cut(s) 692, 1407, 1721
MslI CAYNNNNRTG 5 cut(s) 253, 371, 974, 1091, 1547
MspA1I CMGCKG 3 cut(s) 447, 494, 575
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 2 cut(s) 1485, 1577
MunI CAATTG 2 cut(s) 270, 1454
Mva1269I GAATGC 1 cut(s) 281
MvaI CCWGG 2 cut(s) 1485, 1577
MvnI CGCG 1 cut(s) 447
MwoI GCNNNNNNNGC 5 cut(s) 480, 500, 769, 1014, 1564
NdeI CATATG 1 cut(s) 1109
NdeII GATC 2 cut(s) 183, 456
NheI GCTAGC 1 cut(s) 1693
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 9 cut(s) 244, 319, 415, 1095, 1223, 1417, 1549, 1613, 1669
NspI RCATGY 5 cut(s) 121, 358, 423, 914, 1021
OliI CACNNNNGTG 3 cut(s) 253, 1091, 1547
PagI TCATGA 1 cut(s) 303
PceI AGGCCT 1 cut(s) 1183
PciI ACATGT 4 cut(s) 117, 354, 419, 910
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 601, 869
Pfl23II CGTACG 1 cut(s) 596
PflMI CCANNNNNTGG 1 cut(s) 1688
PkrI GCNGC 6 cut(s) 280, 446, 449, 493, 754, 1651
PleI GAGTC 1 cut(s) 1663
PpsI GAGTC 1 cut(s) 1663
PscI ACATGT 4 cut(s) 117, 354, 419, 910
PsiI TTATAA 4 cut(s) 698, 1538, 1608, 1623
Psp6I CCWGG 2 cut(s) 1483, 1575
PspEI GGTNACC 2 cut(s) 1223, 1669
PspGI CCWGG 2 cut(s) 1483, 1575
PspLI CGTACG 1 cut(s) 596
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 3 cut(s) 207, 822, 883
PstI CTGCAG 1 cut(s) 1549
PstNI CAGNNNCTG 1 cut(s) 1658
PvuII CAGCTG 2 cut(s) 494, 575
RsaI GTAC 5 cut(s) 299, 365, 598, 686, 1169
RsaNI GTAC 5 cut(s) 298, 364, 597, 685, 1168
RseI CAYNNNNRTG 5 cut(s) 253, 371, 974, 1091, 1547
SacII CCGCGG 1 cut(s) 448
SaqAI TTAA 3 cut(s) 692, 1407, 1721
SatI GCNGC 6 cut(s) 279, 445, 448, 492, 753, 1650
Sau3AI GATC 2 cut(s) 183, 456
Sau96I GGNCC 3 cut(s) 207, 822, 883
SchI GAGTC 1 cut(s) 1664
ScrFI CCNGG 2 cut(s) 1485, 1577
SduI GDGCHC 2 cut(s) 842, 1344
SfaNI GCATC 1 cut(s) 228
SfcI CTRYAG 2 cut(s) 756, 1545
Sfr303I CCGCGG 1 cut(s) 448
SgrBI CCGCGG 1 cut(s) 448
SinI GGWCC 2 cut(s) 822, 883
SmiMI CAYNNNNRTG 5 cut(s) 253, 371, 974, 1091, 1547
SmlI CTYRAG 1 cut(s) 1343
SmoI CTYRAG 1 cut(s) 1343
SseBI AGGCCT 1 cut(s) 1183
SsiI CCGC 3 cut(s) 445, 447, 623
SspI AATATT 1 cut(s) 850
SspMI CTAG 5 cut(s) 99, 1010, 1061, 1596, 1694
StuI AGGCCT 1 cut(s) 1183
StyD4I CCNGG 2 cut(s) 1483, 1575
StyI CCWWGG 6 cut(s) 154, 1009, 1060, 1071, 1120, 1178
TaaI ACNGT 2 cut(s) 1613, 1666
TatI WGTACW 2 cut(s) 363, 1167
TauI GCSGC 2 cut(s) 447, 450
TfiI GAWTC 2 cut(s) 601, 869
Tru1I TTAA 3 cut(s) 692, 1407, 1721
Tru9I TTAA 3 cut(s) 692, 1407, 1721
TscAI CASTG 7 cut(s) 847, 966, 1510, 1549, 1554, 1618, 1671
TseFI GTSAC 9 cut(s) 244, 319, 415, 1095, 1223, 1417, 1549, 1613, 1669
TseI GCWGC 4 cut(s) 278, 491, 752, 1649
Tsp45I GTSAC 9 cut(s) 244, 319, 415, 1095, 1223, 1417, 1549, 1613, 1669
TspDTI ATGAA 5 cut(s) 255, 292, 385, 626, 1522
TspRI CASTG 7 cut(s) 847, 966, 1510, 1549, 1554, 1618, 1671
Van91I CCANNNNNTGG 1 cut(s) 1688
VpaK11BI GGWCC 2 cut(s) 822, 883
XapI RAATTY 4 cut(s) 382, 653, 721, 855
XceI RCATGY 5 cut(s) 121, 358, 423, 914, 1021
XcmI CCANNNNNNNNNTGG 1 cut(s) 521
XmaJI CCTAGG 2 cut(s) 1009, 1060
XspI CTAG 5 cut(s) 99, 1010, 1061, 1596, 1694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.