Rroxscaffold_4G00294340

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
14441061 .. 14452616
11556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00294340.1

Sequence Viewer

Length: 1806 bp
ATGGGTAGTTGGACAGACATGAAGGGATTCACCCTCCAAGTTCTTACAGGAAGGTGGCTCAAGTTGTTTGCCTCATTTCTAATGATGGCTGGTGCTGGTGCAAGCTACAGCTTCGGCCTCTACTCAAACGACATCAAGTCCTCGCTCGGTTACACCCAAACGACGCTCAATCTCATCAGCTTCTTCAAGGACTTGGGTGCCAACATTGGCATATTTTCGGGGCTAATCAACGAGCTCACTCCCCCATGGGTGGTCTTATCAATCGGTGCAGCTTTCAACTTCTTTGGCTACTTCATGATTTGGCTTGCCGTGACCAAAAAGATAGCCAAGCCCCAAGTTTGGCACATGTGCATGTACATAACAATGGGGGCAAACTCGCACACTTTCATCAACGCAGGAGCTCTAGGCACATGCGTGAAGAACTTTCCCAGAAGCCGGGGACTCTTGTTAGGCCTTTTGCAGGGCTACACTGGTCTAAGTGCAGCAGTAATAGCACAGCTATACCATGCTTTTTATGGTGATGACACTAAATCCTTCACATTGTTCGTCGCATGGCTTCCTTCTACTCTTACTTTGATATTTCTCCGAACCATTAGAATCATGCCGGTTATACCAAGCAAAAATGACCGCAATGTGTTACATAAATTCTTTTTTATCTCACTTGGACTTGCCATGTTCTTGTTGGTAATAATCATAGTAGAGCGGCAAGTTAACTTCACACAAAGTGAGTACGCTGGGAGTGCTGCTGTAGTGGTTTTCTTGCTCTTTCTCCCACTCGCTGTTGTTGTAGCCGTAGAGCAAAATATTTGGAGGAACAATCGACTAACTAGTACGGCAGAACATATCGATTCATCAGGCCAAAACCAGCTGAGTATAATTTCGTCCCCAGTATCATTAGCGTTACCCAATGATGACAAGACAATTTCTTGTTGGAATTGGAATCACATATTTAGTCCGCCACAGATAGGAAACGACTACACCATACTCCAAGCAGTGTTCAGCATTGAAATGTTAGCTCTGTTCTTGACAACACTATGCGGCCTAGGCGGCATGTTAACAATGATAGACAACTTGGGTCAGATTGGAACAGCATTAGGATACTCATTGGGAAGTGTAACCACATTTGTGTCACTCACAAGCATATGGTGTTACCTAGGGGAAGTAATGGTGGGTATGCTCTCAGATATCTTCGTCACAAAGTACAAATGTCCTAGACCTCTCATGTTCACTCTAACCCTCTTGCTATCATGCATTGGTCACCTTCTGATAGCGTTCAATGTCCCCAACGGTCTCTATGCGGCTGCGATAATCATTGGGTTTTGCTTCGGTGGACAGTGGCCACTGATATTTTCAGTAACTTCTGAGATTTTCGGGCTTAAGCACTGCTCTACTCTGAACAATATTGGGGTAATGGCTTGCCCACTGGGGTCAAATTTGCTCAATGTGAGGGTTACAGGGTTTCTCTATGATAAGGAGGCAGAGAAGCAACTGAAAGCTTTGGGATTGAAGGGGAAGATTGGGGAGGGGTTAAATTGTAGTGGGGTACAATGTTACAAATTGCCCTTCATTATAATCACTGGAGCGACAATGCTTGGTGTGCTTTTTTCACTTGTTTTGGTACTTAGGACTAGCAAGTTCTATAGCACTGACTTGTATAACAAGTTCAAAGATGAGGCCAAAGCAGCAGAGTATGAAACTGTGGTGGCCAGAAACCCAGTTGGACTAGAAAAATCTAGTGAAAAGTTAGAGTTGAGACTTGAGAGTGATTCAGCAAGTAGCAGAAGAAACCAACCTCAAGACGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

601

Amino Acids

66.08

Weight (kDa)

8.77

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 18 - 263 1.1e-84 Nodulin-like
NFD4_C PF23262 343 - 548 8.2e-17 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015691)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1571
AatII GACGTC 1 cut(s) 1803
AccB1I GGYRCC 1 cut(s) 197
AccBSI CCGCTC 1 cut(s) 703
AciI CCGC 6 cut(s) 628, 703, 956, 1038, 1047, 1298
AcoI YGGCCR 2 cut(s) 1337, 1704
AcsI RAATTY 2 cut(s) 644, 1432
AcyI GRCGYC 1 cut(s) 1800
AdeI CACNNNGTG 1 cut(s) 725
AfaI GTAC 6 cut(s) 356, 731, 832, 1202, 1545, 1620
AfiI CCNNNNNNNGG 5 cut(s) 250, 339, 435, 460, 965
AflII CTTAAG 1 cut(s) 1376
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 6 cut(s) 187, 277, 1007, 1276, 1507, 1666
AhdI GACNNNNNGTC 1 cut(s) 136
AhlI ACTAGT 1 cut(s) 827
AleI CACNNNNGTG 2 cut(s) 413, 1124
Alw21I GWGCWC 2 cut(s) 237, 403
Alw26I GTCTC 2 cut(s) 1295, 1747
AoxI GGCC 7 cut(s) 115, 451, 856, 1039, 1337, 1674, 1704
ApeKI GCWGC 5 cut(s) 269, 482, 743, 1301, 1682
ApoI RAATTY 2 cut(s) 644, 1432
Asp700I GAANNNNTTC 1 cut(s) 26
AspA2I CCTAGG 2 cut(s) 1042, 1153
AsuC2I CCSGG 1 cut(s) 437
AsuHPI GGTGA 3 cut(s) 22, 530, 1250
AvrII CCTAGG 2 cut(s) 1042, 1153
BalI TGGCCA 2 cut(s) 1339, 1706
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 2 cut(s) 237, 403
Bbv12I GWGCWC 2 cut(s) 237, 403
BbvI GCAGC 5 cut(s) 281, 494, 730, 1288, 1694
BccI CCATC 1 cut(s) 79
BceAI ACGGC 3 cut(s) 293, 776, 849
BciVI GTATCC 1 cut(s) 1091
BcnI CCSGG 1 cut(s) 437
BcoDI GTCTC 2 cut(s) 1295, 1747
BcuI ACTAGT 1 cut(s) 827
BfaI CTAG 8 cut(s) 404, 828, 1043, 1154, 1212, 1629, 1724, 1734
BfmI CTRYAG 3 cut(s) 106, 747, 1639
BfrI CTTAAG 1 cut(s) 1376
BfuI GTATCC 1 cut(s) 1091
BglI GCCNNNNNGGC 1 cut(s) 1047
BisI GCNGC 9 cut(s) 270, 483, 704, 744, 1039, 1048, 1299, 1302, 1683
BlnI CCTAGG 2 cut(s) 1042, 1153
BlsI GCNGC 9 cut(s) 271, 484, 705, 745, 1040, 1049, 1300, 1303, 1684
Bme1390I CCNGG 1 cut(s) 437
BmeRI GACNNNNNGTC 1 cut(s) 136
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 437
BmrI ACTGGG 3 cut(s) 881, 1433, 1709
BmuI ACTGGG 3 cut(s) 881, 1433, 1709
BpmI CTGGAG 1 cut(s) 1599
BpuEI CTTGAG 3 cut(s) 44, 1778, 1779
BpuMI CCSGG 1 cut(s) 437
Bsa29I ATCGAT 1 cut(s) 846
BsaHI GRCGYC 1 cut(s) 1800
BsaI GGTCTC 1 cut(s) 1295
BsaJI CCNNGG 4 cut(s) 245, 436, 1042, 1153
Bsc4I CCNNNNNNNGG 5 cut(s) 250, 339, 435, 460, 965
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 5 cut(s) 475, 887, 1428, 1582, 1715
Bse3DI GCAATG 1 cut(s) 637
BseCI ATCGAT 1 cut(s) 846
BseDI CCNNGG 4 cut(s) 245, 436, 1042, 1153
BseLI CCNNNNNNNGG 5 cut(s) 250, 339, 435, 460, 965
BseMI GCAATG 1 cut(s) 637
BseMII CTCAG 3 cut(s) 860, 1194, 1353
BseNI ACTGG 5 cut(s) 475, 887, 1428, 1582, 1715
BseXI GCAGC 5 cut(s) 281, 494, 730, 1288, 1694
BseYI CCCAGC 1 cut(s) 734
BsgI GTGCAG 2 cut(s) 288, 501
BshFI GGCC 7 cut(s) 117, 453, 858, 1041, 1339, 1676, 1706
BshNI GGYRCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 846
BsiHKAI GWGCWC 2 cut(s) 237, 403
BsiSI CCGG 2 cut(s) 436, 605
BslFI GGGAC 3 cut(s) 453, 868, 1265
BslI CCNNNNNNNGG 5 cut(s) 250, 339, 435, 460, 965
BsmAI GTCTC 2 cut(s) 1295, 1747
BsmFI GGGAC 3 cut(s) 453, 868, 1265
BsnI GGCC 7 cut(s) 117, 453, 858, 1041, 1339, 1676, 1706
Bso31I GGTCTC 1 cut(s) 1295
Bsp1286I GDGCHC 2 cut(s) 237, 403
Bsp1407I TGTACA 1 cut(s) 354
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 6 cut(s) 628, 703, 956, 1038, 1047, 1298
BspANI GGCC 7 cut(s) 117, 453, 858, 1041, 1339, 1676, 1706
BspCNI CTCAG 3 cut(s) 861, 1193, 1354
BspDI ATCGAT 1 cut(s) 846
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 199
BspT107I GGYRCC 1 cut(s) 197
BspTI CTTAAG 1 cut(s) 1376
BspTNI GGTCTC 1 cut(s) 1295
BsrBI CCGCTC 1 cut(s) 703
BsrDI GCAATG 1 cut(s) 637
BsrFI RCCGGY 1 cut(s) 604
BsrGI TGTACA 1 cut(s) 354
BsrI ACTGG 5 cut(s) 475, 887, 1428, 1582, 1715
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 4 cut(s) 245, 436, 1042, 1153
BssNI GRCGYC 1 cut(s) 1800
BssT1I CCWWGG 3 cut(s) 245, 1042, 1153
Bst4CI ACNGT 3 cut(s) 1289, 1335, 1699
BstACI GRCGYC 1 cut(s) 1800
BstAFI CTTAAG 1 cut(s) 1376
BstAUI TGTACA 1 cut(s) 354
BstC8I GCNNGC 3 cut(s) 103, 306, 1417
BstDEI CTNAG 5 cut(s) 476, 869, 1180, 1362, 1622
BstDSI CCRYGG 1 cut(s) 245
BstEII GGTNACC 1 cut(s) 1256
BstENI CCTNNNNNAGG 1 cut(s) 458
BstMAI GTCTC 2 cut(s) 1295, 1747
BstMWI GCNNNNNNNGC 6 cut(s) 491, 740, 1044, 1047, 1597, 1682
BstNSI RCATGY 4 cut(s) 349, 355, 414, 1054
BstPI GGTNACC 1 cut(s) 1256
BstSCI CCNGG 1 cut(s) 435
BstSFI CTRYAG 3 cut(s) 106, 747, 1639
BstV1I GCAGC 5 cut(s) 281, 494, 730, 1288, 1694
Bsu15I ATCGAT 1 cut(s) 846
BsuI GTATCC 1 cut(s) 1091
BsuRI GGCC 7 cut(s) 117, 453, 858, 1041, 1339, 1676, 1706
BsuTUI ATCGAT 1 cut(s) 846
BtgI CCRYGG 1 cut(s) 245
BtsI GCAGTG 2 cut(s) 999, 1381
BtsIMutI CAGTG 8 cut(s) 468, 999, 1340, 1340, 1381, 1421, 1575, 1644
Cac8I GCNNGC 3 cut(s) 103, 306, 1417
CciI TCATGA 1 cut(s) 294
Cfr10I RCCGGY 1 cut(s) 604
ClaI ATCGAT 1 cut(s) 846
CseI GACGC 1 cut(s) 172
Csp6I GTAC 6 cut(s) 355, 730, 831, 1201, 1544, 1619
CviQI GTAC 6 cut(s) 355, 730, 831, 1201, 1544, 1619
DdeI CTNAG 5 cut(s) 476, 869, 1180, 1362, 1622
DraIII CACNNNGTG 1 cut(s) 725
DriI GACNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 2 cut(s) 1337, 1704
Eam1105I GACNNNNNGTC 1 cut(s) 136
EciI GGCGGA 1 cut(s) 945
Ecl136II GAGCTC 2 cut(s) 235, 401
Eco130I CCWWGG 3 cut(s) 245, 1042, 1153
Eco147I AGGCCT 1 cut(s) 453
Eco24I GRGCYC 2 cut(s) 237, 403
Eco31I GGTCTC 1 cut(s) 1295
Eco32I GATATC 1 cut(s) 1186
Eco53kI GAGCTC 2 cut(s) 235, 401
Eco91I GGTNACC 1 cut(s) 1256
EcoICRI GAGCTC 2 cut(s) 235, 401
EcoNI CCTNNNNNAGG 1 cut(s) 458
EcoO65I GGTNACC 1 cut(s) 1256
EcoRV GATATC 1 cut(s) 1186
EcoT14I CCWWGG 3 cut(s) 245, 1042, 1153
EcoT22I ATGCAT 1 cut(s) 1253
EcoT38I GRGCYC 2 cut(s) 237, 403
ErhI CCWWGG 3 cut(s) 245, 1042, 1153
FaqI GGGAC 3 cut(s) 453, 868, 1265
FauNDI CATATG 1 cut(s) 1142
Fnu4HI GCNGC 9 cut(s) 270, 483, 704, 744, 1039, 1048, 1299, 1302, 1683
FriOI GRGCYC 2 cut(s) 237, 403
Fsp4HI GCNGC 9 cut(s) 270, 483, 704, 744, 1039, 1048, 1299, 1302, 1683
FspBI CTAG 8 cut(s) 404, 828, 1043, 1154, 1212, 1629, 1724, 1734
GluI GCNGC 9 cut(s) 270, 483, 704, 744, 1039, 1048, 1299, 1302, 1683
GsaI CCCAGC 1 cut(s) 738
GsuI CTGGAG 1 cut(s) 1599
HaeIII GGCC 7 cut(s) 117, 453, 858, 1041, 1339, 1676, 1706
HapII CCGG 2 cut(s) 436, 605
HgaI GACGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 1800
HincII GTYRAC 2 cut(s) 712, 1056
HindII GTYRAC 2 cut(s) 712, 1056
HindIII AAGCTT 1 cut(s) 1494
HinfI GANTC 6 cut(s) 27, 441, 597, 848, 940, 1766
HpaI GTTAAC 2 cut(s) 712, 1056
HpaII CCGG 2 cut(s) 436, 605
HphI GGTGA 3 cut(s) 22, 530, 1250
Hpy166II GTNNAC 4 cut(s) 712, 1056, 1227, 1331
Hpy188I TCNGA 7 cut(s) 587, 1080, 1183, 1266, 1363, 1395, 1805
Hpy188III TCNNGA 3 cut(s) 295, 1024, 1796
Hpy8I GTNNAC 4 cut(s) 712, 1056, 1227, 1331
Hpy99I CGWCG 2 cut(s) 166, 551
HpyAV CCTTC 7 cut(s) 16, 45, 544, 570, 1271, 1501, 1573
HpyCH4III ACNGT 3 cut(s) 1289, 1335, 1699
HpyCH4IV ACGT 1 cut(s) 1800
HpyCH4V TGCA 6 cut(s) 101, 269, 351, 460, 482, 1251
HpyF10VI GCNNNNNNNGC 6 cut(s) 491, 740, 1044, 1047, 1597, 1682
HpyF3I CTNAG 5 cut(s) 476, 869, 1180, 1362, 1622
HpySE526I ACGT 1 cut(s) 1800
Hsp92I GRCGYC 1 cut(s) 1800
KspAI GTTAAC 2 cut(s) 712, 1056
LmnI GCTCC 2 cut(s) 398, 1580
Lsp1109I GCAGC 5 cut(s) 281, 494, 730, 1288, 1694
MaeI CTAG 8 cut(s) 404, 828, 1043, 1154, 1212, 1629, 1724, 1734
MaeII ACGT 1 cut(s) 1800
MbiI CCGCTC 1 cut(s) 703
MboII GAAGA 5 cut(s) 175, 430, 1180, 1525, 1794
MhlI GDGCHC 2 cut(s) 237, 403
MlsI TGGCCA 2 cut(s) 1339, 1706
MluCI AATT 7 cut(s) 644, 876, 921, 934, 1432, 1531, 1556
MluNI TGGCCA 2 cut(s) 1339, 1706
MlyI GAGTC 1 cut(s) 435
MmeI TCCRAC 2 cut(s) 911, 1699
Mox20I TGGCCA 2 cut(s) 1339, 1706
Mph1103I ATGCAT 1 cut(s) 1253
MroXI GAANNNNTTC 1 cut(s) 26
MscI TGGCCA 2 cut(s) 1339, 1706
MseI TTAA 4 cut(s) 711, 1055, 1377, 1529
MslI CAYNNNNRTG 5 cut(s) 350, 362, 413, 1007, 1124
Msp20I TGGCCA 2 cut(s) 1339, 1706
MspA1I CMGCKG 1 cut(s) 868
MspCI CTTAAG 1 cut(s) 1376
MspI CCGG 2 cut(s) 436, 605
MspR9I CCNGG 1 cut(s) 437
MwoI GCNNNNNNNGC 6 cut(s) 491, 740, 1044, 1047, 1597, 1682
NciI CCSGG 1 cut(s) 437
NcoI CCATGG 1 cut(s) 245
NdeI CATATG 1 cut(s) 1142
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 4 cut(s) 310, 1128, 1192, 1256
NsiI ATGCAT 1 cut(s) 1253
NspI RCATGY 4 cut(s) 349, 355, 414, 1054
OliI CACNNNNGTG 2 cut(s) 413, 1124
PagI TCATGA 1 cut(s) 294
PceI AGGCCT 1 cut(s) 453
PciI ACATGT 1 cut(s) 345
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 5 cut(s) 27, 597, 848, 940, 1766
PkrI GCNGC 9 cut(s) 271, 484, 705, 745, 1040, 1049, 1300, 1303, 1684
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
PscI ACATGT 1 cut(s) 345
PsiI TTATAA 1 cut(s) 1571
Psp124BI GAGCTC 2 cut(s) 237, 403
PspEI GGTNACC 1 cut(s) 1256
PspFI CCCAGC 1 cut(s) 734
PspN4I GGNNCC 1 cut(s) 199
PsrI GAACNNNNNNTAC 2 cut(s) 1646, 1678
PvuII CAGCTG 1 cut(s) 868
RsaI GTAC 6 cut(s) 356, 731, 832, 1202, 1545, 1620
RsaNI GTAC 6 cut(s) 355, 730, 831, 1201, 1544, 1619
RseI CAYNNNNRTG 5 cut(s) 350, 362, 413, 1007, 1124
SacI GAGCTC 2 cut(s) 237, 403
SaqAI TTAA 4 cut(s) 711, 1055, 1377, 1529
SatI GCNGC 9 cut(s) 270, 483, 704, 744, 1039, 1048, 1299, 1302, 1683
SchI GAGTC 1 cut(s) 435
ScrFI CCNGG 1 cut(s) 437
SduI GDGCHC 2 cut(s) 237, 403
SfcI CTRYAG 3 cut(s) 106, 747, 1639
SmiMI CAYNNNNRTG 5 cut(s) 350, 362, 413, 1007, 1124
SmlI CTYRAG 4 cut(s) 59, 1376, 1757, 1794
SmoI CTYRAG 4 cut(s) 59, 1376, 1757, 1794
SpeI ACTAGT 1 cut(s) 827
Sse9I AATT 7 cut(s) 644, 876, 921, 934, 1432, 1531, 1556
SseBI AGGCCT 1 cut(s) 453
SsiI CCGC 6 cut(s) 628, 703, 956, 1038, 1047, 1298
SspI AATATT 2 cut(s) 805, 1402
SspMI CTAG 8 cut(s) 404, 828, 1043, 1154, 1212, 1629, 1724, 1734
SstI GAGCTC 2 cut(s) 237, 403
StuI AGGCCT 1 cut(s) 453
StyD4I CCNGG 1 cut(s) 435
StyI CCWWGG 3 cut(s) 245, 1042, 1153
TaaI ACNGT 3 cut(s) 1289, 1335, 1699
TaiI ACGT 1 cut(s) 1803
TaqI TCGA 2 cut(s) 820, 846
TasI AATT 7 cut(s) 644, 876, 921, 934, 1432, 1531, 1556
TatI WGTACW 2 cut(s) 354, 1200
TauI GCSGC 4 cut(s) 706, 1041, 1050, 1301
TfiI GAWTC 5 cut(s) 27, 597, 848, 940, 1766
Tru1I TTAA 4 cut(s) 711, 1055, 1377, 1529
Tru9I TTAA 4 cut(s) 711, 1055, 1377, 1529
TscAI CASTG 8 cut(s) 475, 999, 1340, 1347, 1388, 1428, 1582, 1651
TseFI GTSAC 4 cut(s) 310, 1128, 1192, 1256
TseI GCWGC 5 cut(s) 269, 482, 743, 1301, 1682
Tsp45I GTSAC 4 cut(s) 310, 1128, 1192, 1256
TspDTI ATGAA 6 cut(s) 35, 283, 376, 840, 1555, 1707
TspRI CASTG 8 cut(s) 475, 999, 1340, 1347, 1388, 1428, 1582, 1651
Vha464I CTTAAG 1 cut(s) 1376
XagI CCTNNNNNAGG 1 cut(s) 458
XapI RAATTY 2 cut(s) 644, 1432
XceI RCATGY 4 cut(s) 349, 355, 414, 1054
XcmI CCANNNNNNNNNTGG 2 cut(s) 512, 679
XmaJI CCTAGG 2 cut(s) 1042, 1153
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 8 cut(s) 404, 828, 1043, 1154, 1212, 1629, 1724, 1734
ZraI GACGTC 1 cut(s) 1801
Zsp2I ATGCAT 1 cut(s) 1253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.