Rorug01G0296500

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015691
Physical Location & Seq
Forward (+)
41174658 .. 41175783
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0296500.1

Sequence Viewer

Length: 561 bp
ATGTCTCTGTTTTTGTCTTCAACAGCGAGCATTTTAAGCTCTCTGTATTTGAGAGTGTCGGAGTTATTGGGCAATGCCAAGAACTATATTGTGAACAAGGCCAGGGGTTATGTTTTGGCGAGGTTGGTTGAGATGCAGAGGAGGTCTGCGCTTATTGTAGACCTTCAACTTGAGGATATAAGCTTCGACTCCATAGATCTCCTTTTCAAGATCTCTGTGTACAACTCATTTCAGTTTTCTCTGCCTGTCAGTCAAGCCTCCTTCAAAATGAAAATCGGTGGCAGTGAACCTTTATTAGGGAAATTGAAGGAGCCTGTGTACATAAAGGCAGGAGCAGATTCTATATTGCTTTTGTCAGCGAAGGTGCCATTTAGTATACTTATAAATTTGGCAAATGACATTTCTGTAGATGCAGACATTGACTACCGCATCGATTTCCAACTCACAATTCACCTTCCTATCATCGGCAACATCTCTTTACCACTTCCTTGCCAACAAGGCGAGACCAAGATCTCCGATTTGTTTAGCAATTTGATGGATCAAATCATGATGAGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MFS_1 Nodulin-like

Protein Analysis

186

Amino Acids

20.69

Weight (kDa)

5.37

Isoelectric Point (pI)

37.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 70 - 165 1.2e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015691)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g18460 FvH4_7g18460
malus_domestica MD01G1101300.v1.1
prunus_persica Prupe.2G206500_v2.0.a1
pyrus_communis pycom01g12790
rosa_chinensis RchiOBHm_Chr1g0362271
rosa_laevigata RLG00000027660
rosa_multiflora Rmu_sc0001237.1_g000019 Rmu_ssc0000009.1_g000005
rosa_roxburghii Rroxscaffold_4G00294320 Rroxscaffold_4G00294340
rosa_rugosa Rorug01G0296500
rosa_samantha Rh1AG305500 Rh1BG268700 Rh1CG286700 Rh1DG298800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
AccB1I GGYRCC 1 cut(s) 364
AccI GTMKAC 2 cut(s) 159, 376
AciI CCGC 1 cut(s) 427
AclWI GGATC 1 cut(s) 546
AcsI RAATTY 1 cut(s) 385
AfaI GTAC 2 cut(s) 221, 320
AfiI CCNNNNNNNGG 2 cut(s) 296, 464
AgsI TTSAA 5 cut(s) 21, 167, 208, 265, 307
AjnI CCWGG 1 cut(s) 101
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AluBI AGCT 2 cut(s) 39, 183
AluI AGCT 2 cut(s) 39, 183
Alw26I GTCTC 2 cut(s) 9, 497
AlwI GGATC 1 cut(s) 546
AoxI GGCC 1 cut(s) 99
ApoI RAATTY 1 cut(s) 385
AspLEI GCGC 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 443
BanI GGYRCC 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 9
BccI CCATC 1 cut(s) 529
BciT130I CCWGG 1 cut(s) 103
BcoDI GTCTC 2 cut(s) 9, 497
BfmI CTRYAG 1 cut(s) 405
BglI GCCNNNNNGGC 1 cut(s) 498
BglII AGATCT 3 cut(s) 196, 210, 510
Bme1390I CCNGG 1 cut(s) 103
BmiI GGNNCC 2 cut(s) 312, 366
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 3 cut(s) 123, 400, 438
BpiI GAAGAC 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 191
Bsa29I ATCGAT 1 cut(s) 432
BsaI GGTCTC 1 cut(s) 497
BsaJI CCNNGG 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
Bsc4I CCNNNNNNNGG 2 cut(s) 296, 464
Bse3DI GCAATG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 103
BseCI ATCGAT 1 cut(s) 432
BseDI CCNNGG 1 cut(s) 102
BseLI CCNNNNNNNGG 2 cut(s) 296, 464
BseMI GCAATG 1 cut(s) 79
BseRI GAGGAG 1 cut(s) 154
BshFI GGCC 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 364
BshVI ATCGAT 1 cut(s) 432
BslI CCNNNNNNNGG 2 cut(s) 296, 464
BsmAI GTCTC 2 cut(s) 9, 497
BsnI GGCC 1 cut(s) 101
Bso31I GGTCTC 1 cut(s) 497
Bsp1407I TGTACA 2 cut(s) 219, 318
Bsp143I GATC 4 cut(s) 196, 210, 510, 538
BspACI CCGC 1 cut(s) 427
BspANI GGCC 1 cut(s) 101
BspDI ATCGAT 1 cut(s) 432
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 312, 366
BspPI GGATC 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 364
BspTNI GGTCTC 1 cut(s) 497
BsrDI GCAATG 1 cut(s) 79
BsrGI TGTACA 2 cut(s) 219, 318
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 4 cut(s) 196, 210, 510, 538
BssNAI GTATAC 1 cut(s) 377
Bst1107I GTATAC 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 103
BstAUI TGTACA 2 cut(s) 219, 318
BstC8I GCNNGC 1 cut(s) 28
BstENI CCTNNNNNAGG 1 cut(s) 294
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 4 cut(s) 199, 213, 513, 541
BstMAI GTCTC 2 cut(s) 9, 497
BstMBI GATC 4 cut(s) 196, 210, 510, 538
BstMWI GCNNNNNNNGC 2 cut(s) 36, 498
BstNI CCWGG 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 1 cut(s) 405
BstV2I GAAGAC 1 cut(s) 9
BstX2I RGATCY 3 cut(s) 196, 210, 510
BstYI RGATCY 3 cut(s) 196, 210, 510
BstZ17I GTATAC 1 cut(s) 377
Bsu15I ATCGAT 1 cut(s) 432
BsuRI GGCC 1 cut(s) 101
BsuTUI ATCGAT 1 cut(s) 432
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 28
CciI TCATGA 1 cut(s) 546
CfoI GCGC 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 432
Csp6I GTAC 2 cut(s) 220, 319
CviAII CATG 1 cut(s) 547
CviJI RGCY 5 cut(s) 39, 101, 183, 257, 313
CviKI_1 RGCY 5 cut(s) 39, 101, 183, 257, 313
CviQI GTAC 2 cut(s) 220, 319
DpnI GATC 4 cut(s) 198, 212, 512, 540
DpnII GATC 4 cut(s) 196, 210, 510, 538
Eco31I GGTCTC 1 cut(s) 497
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoRII CCWGG 1 cut(s) 101
FaeI CATG 1 cut(s) 550
FaiI YATR 9 cut(s) 87, 111, 179, 194, 323, 344, 377, 383, 548
FatI CATG 1 cut(s) 546
FblI GTMKAC 2 cut(s) 159, 376
GlaI GCGC 1 cut(s) 150
HaeIII GGCC 1 cut(s) 101
HhaI GCGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 550
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 2 cut(s) 188, 338
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 6 cut(s) 94, 160, 220, 287, 319, 377
Hpy188I TCNGA 2 cut(s) 61, 517
Hpy188III TCNNGA 2 cut(s) 208, 547
Hpy8I GTNNAC 6 cut(s) 94, 160, 220, 287, 319, 377
HpyAV CCTTC 5 cut(s) 173, 271, 301, 355, 464
HpyCH4V TGCA 2 cut(s) 136, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 498
Hsp92II CATG 1 cut(s) 550
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 4 cut(s) 196, 210, 510, 538
LmnI GCTCC 2 cut(s) 310, 332
LpnPI CCDG 5 cut(s) 88, 115, 258, 315, 327
LweI GCATC 3 cut(s) 123, 400, 438
MalI GATC 4 cut(s) 198, 212, 512, 540
MboI GATC 4 cut(s) 196, 210, 510, 538
MboII GAAGA 1 cut(s) 9
MflI RGATCY 3 cut(s) 196, 210, 510
MluCI AATT 4 cut(s) 302, 385, 447, 529
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 2 cut(s) 39, 463
MnlI CCTC 5 cut(s) 114, 132, 135, 166, 268
MseI TTAA 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 103
MvaI CCWGG 1 cut(s) 103
MwoI GCNNNNNNNGC 2 cut(s) 36, 498
NdeII GATC 4 cut(s) 196, 210, 510, 538
NlaIII CATG 1 cut(s) 550
NlaIV GGNNCC 2 cut(s) 312, 366
PagI TCATGA 1 cut(s) 546
PfeI GAWTC 1 cut(s) 338
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
PsiI TTATAA 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 101
PspGI CCWGG 1 cut(s) 101
PspN4I GGNNCC 2 cut(s) 312, 366
PsuI RGATCY 3 cut(s) 196, 210, 510
RsaI GTAC 2 cut(s) 221, 320
RsaNI GTAC 2 cut(s) 220, 319
SaqAI TTAA 1 cut(s) 35
Sau3AI GATC 4 cut(s) 196, 210, 510, 538
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 1 cut(s) 103
SetI ASST 8 cut(s) 41, 125, 146, 165, 185, 292, 366, 456
SfaNI GCATC 3 cut(s) 123, 400, 438
SfcI CTRYAG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 4 cut(s) 302, 385, 447, 529
SsiI CCGC 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 101
TaqI TCGA 2 cut(s) 186, 432
TasI AATT 4 cut(s) 302, 385, 447, 529
TatI WGTACW 2 cut(s) 219, 318
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 1 cut(s) 289
XagI CCTNNNNNAGG 1 cut(s) 294
XapI RAATTY 1 cut(s) 385
XmiI GTMKAC 2 cut(s) 159, 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.