Prupe.2G232700_v2.0.a1

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0016116
Physical Location & Seq
Reverse (-)
25619148 .. 25621073
1926 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G232700.1

Sequence Viewer

Length: 588 bp
ATGCACTCTCCTCCTCAGCAGCCTCACCGGAACGGCGAGACGACGCCGTACCCGATCCCCAACCATCCCTTCCACTCCACCGTCTCGCTACGGAAGCTCAGGCGCTTCAACTACCTCATCCTTGTCTTCCGAATCGCCTCCTTCAGCTTCTCTCTCGCTTCCTTCATCTTCATGCTCTCCACTTCTCGCGGCCCCAACTCCCCTCGCTGGTACCACTTCGACGCCTTCAGATTGGTAGTGGGAGCGAATGCAATAGTGGCGCTCTACTCTCTCTTCGAAATGGTGGCTTCGGTTTGGGAAATCTCCAGAGGAGCCACTGTCTTCAGCGAGGTCTTACAGGTCTGGTTCGACTTCGGCCATGATCAGGTGTTCGCGTACTTGTTGCTGTCTGCGGATTCGGCGGGAACGGCGTTGGCGAGGGTTTTGAAAGGGAGGGACACGTGTACGGCCTGGAACGCGTTCTGCATACAGGCGGACGTGGCCATCGCCCTGGGCTTTGTCGGGTTTCTGTTCCTGGGCTTTTCGTCTCTGCTCTCGGGTTTCCGGGTCGCCTGCTTCATAATCAAGGGCTCTCGTTTTCATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

196

Amino Acids

21.88

Weight (kDa)

9.65

Isoelectric Point (pI)

36.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55390
fragaria_vesca FvH4_7g22070
malus_domestica MD01G1125700.v1.1
prunus_persica Prupe.2G232700_v2.0.a1
pyrus_communis pycom01g15150
rosa_chinensis RchiOBHm_Chr1g0366461
rosa_laevigata RLG00000027346
rosa_roxburghii Rroxscaffold_4G00289920 Rroxscaffold_4G00290180
rosa_rugosa Rorug01G0330000
rosa_samantha Rh1AG337900 Rh1BG299400 Rh1CG314500 Rh1DG331200
rosa_wichuraiana Rw1G029920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 210
AccII CGCG 3 cut(s) 189, 374, 458
AciI CCGC 4 cut(s) 189, 392, 401, 473
AclWI GGATC 1 cut(s) 49
AcoI YGGCCR 2 cut(s) 355, 480
AcuI CTGAAG 3 cut(s) 127, 211, 307
AcvI CACGTG 1 cut(s) 441
AcyI GRCGYC 2 cut(s) 44, 222
AfaI GTAC 4 cut(s) 50, 212, 377, 445
AfiI CCNNNNNNNGG 2 cut(s) 207, 364
AflIII ACRYGT 3 cut(s) 438, 440, 456
AgsI TTSAA 2 cut(s) 109, 427
AjiI CACGTC 1 cut(s) 478
AjnI CCWGG 3 cut(s) 449, 489, 513
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AluBI AGCT 2 cut(s) 97, 147
AluI AGCT 2 cut(s) 97, 147
Alw26I GTCTC 3 cut(s) 32, 88, 531
AlwI GGATC 1 cut(s) 49
Ama87I CYCGRG 1 cut(s) 535
AoxI GGCC 4 cut(s) 190, 355, 447, 480
ApeKI GCWGC 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 458
Asp718I GGTACC 1 cut(s) 210
AspLEI GCGC 2 cut(s) 105, 262
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 545
AsuHPI GGTGA 1 cut(s) 17
AsuII TTCGAA 1 cut(s) 276
AvaI CYCGRG 1 cut(s) 535
BalI TGGCCA 1 cut(s) 482
BanI GGYRCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 572
BbrPI CACGTG 1 cut(s) 441
BbsI GAAGAC 2 cut(s) 118, 313
BbvCI CCTCAGC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 31
BccI CCATC 2 cut(s) 72, 491
BceAI ACGGC 4 cut(s) 31, 49, 423, 462
BciT130I CCWGG 3 cut(s) 451, 491, 515
BclI TGATCA 1 cut(s) 361
BcnI CCSGG 1 cut(s) 545
BcoDI GTCTC 3 cut(s) 32, 88, 531
BfoI RGCGCY 2 cut(s) 106, 263
BisI GCNGC 2 cut(s) 20, 190
BlsI GCNGC 2 cut(s) 21, 191
Bme1390I CCNGG 4 cut(s) 451, 491, 515, 545
BmeT110I CYCGRG 1 cut(s) 535
BmgBI CACGTC 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 3 cut(s) 193, 212, 313
BmrFI CCNGG 4 cut(s) 451, 491, 515, 545
BpiI GAAGAC 2 cut(s) 118, 313
BpmI CTGGAG 1 cut(s) 289
Bpu10I CCTNAGC 2 cut(s) 15, 98
Bpu14I TTCGAA 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 545
BsaAI YACGTR 1 cut(s) 441
BsaHI GRCGYC 2 cut(s) 44, 222
BsaJI CCNNGG 3 cut(s) 489, 490, 514
BsaWI WCCGGW 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 364
BseBI CCWGG 3 cut(s) 451, 491, 515
BseDI CCNNGG 3 cut(s) 489, 490, 514
BseGI GGATG 2 cut(s) 64, 117
BseLI CCNNNNNNNGG 2 cut(s) 207, 364
BseMII CTCAG 2 cut(s) 29, 112
BseRI GAGGAG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 3 cut(s) 189, 374, 458
BshFI GGCC 4 cut(s) 192, 357, 449, 482
BshNI GGYRCC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 535
BsiSI CCGG 2 cut(s) 28, 544
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 2 cut(s) 207, 364
BsmAI GTCTC 3 cut(s) 32, 88, 531
BsmBI CGTCTC 3 cut(s) 32, 88, 531
BsmFI GGGAC 1 cut(s) 449
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 4 cut(s) 192, 357, 449, 482
BsoBI CYCGRG 1 cut(s) 535
Bsp119I TTCGAA 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 572
Bsp143I GATC 2 cut(s) 54, 361
BspACI CCGC 4 cut(s) 189, 392, 401, 473
BspANI GGCC 4 cut(s) 192, 357, 449, 482
BspCNI CTCAG 2 cut(s) 28, 111
BspFNI CGCG 3 cut(s) 189, 374, 458
BspLI GGNNCC 3 cut(s) 193, 212, 313
BspPI GGATC 1 cut(s) 49
BspT104I TTCGAA 1 cut(s) 276
BspT107I GGYRCC 1 cut(s) 210
BssECI CCNNGG 3 cut(s) 489, 490, 514
BssMI GATC 2 cut(s) 54, 361
BssNI GRCGYC 2 cut(s) 44, 222
Bst2UI CCWGG 3 cut(s) 451, 491, 515
Bst4CI ACNGT 2 cut(s) 82, 319
Bst6I CTCTTC 1 cut(s) 278
BstACI GRCGYC 2 cut(s) 44, 222
BstBAI YACGTR 1 cut(s) 441
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 553
BstDEI CTNAG 2 cut(s) 15, 98
BstF5I GGATG 2 cut(s) 64, 117
BstFNI CGCG 3 cut(s) 189, 374, 458
BstH2I RGCGCY 2 cut(s) 106, 263
BstHHI GCGC 2 cut(s) 105, 262
BstKTI GATC 2 cut(s) 57, 364
BstMAI GTCTC 3 cut(s) 32, 88, 531
BstMBI GATC 2 cut(s) 54, 361
BstMWI GCNNNNNNNGC 6 cut(s) 94, 257, 398, 407, 455, 479
BstNI CCWGG 3 cut(s) 451, 491, 515
BstSCI CCNGG 4 cut(s) 449, 489, 513, 543
BstUI CGCG 3 cut(s) 189, 374, 458
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 2 cut(s) 118, 313
BstXI CCANNNNNNTGG 1 cut(s) 490
BsuRI GGCC 4 cut(s) 192, 357, 449, 482
BtgZI GCGATG 1 cut(s) 469
BtrI CACGTC 1 cut(s) 478
BtsCI GGATG 2 cut(s) 64, 117
BtsIMutI CAGTG 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 553
CfoI GCGC 2 cut(s) 105, 262
Cfr13I GGNCC 1 cut(s) 191
CseI GACGC 2 cut(s) 52, 230
Csp6I GTAC 4 cut(s) 49, 211, 376, 444
CviAII CATG 2 cut(s) 172, 359
CviQI GTAC 4 cut(s) 49, 211, 376, 444
DdeI CTNAG 2 cut(s) 15, 98
DpnI GATC 2 cut(s) 56, 363
DpnII GATC 2 cut(s) 54, 361
EaeI YGGCCR 2 cut(s) 355, 480
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
EciI GGCGGA 1 cut(s) 488
Eco24I GRGCYC 1 cut(s) 572
Eco57I CTGAAG 3 cut(s) 127, 211, 307
Eco72I CACGTG 1 cut(s) 441
Eco88I CYCGRG 1 cut(s) 535
EcoRII CCWGG 3 cut(s) 449, 489, 513
EcoT38I GRGCYC 1 cut(s) 572
Esp3I CGTCTC 3 cut(s) 32, 88, 531
FaeI CATG 2 cut(s) 175, 362
FaiI YATR 4 cut(s) 173, 360, 467, 560
FaqI GGGAC 1 cut(s) 449
FatI CATG 2 cut(s) 171, 358
FauI CCCGC 1 cut(s) 394
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 20, 190
FokI GGATG 2 cut(s) 51, 104
FriOI GRGCYC 1 cut(s) 572
Fsp4HI GCNGC 2 cut(s) 20, 190
GlaI GCGC 2 cut(s) 104, 261
GluI GCNGC 2 cut(s) 20, 190
GsuI CTGGAG 1 cut(s) 289
HaeII RGCGCY 2 cut(s) 106, 263
HaeIII GGCC 4 cut(s) 192, 357, 449, 482
HapII CCGG 2 cut(s) 28, 544
HgaI GACGC 2 cut(s) 52, 230
HhaI GCGC 2 cut(s) 105, 262
Hin1I GRCGYC 2 cut(s) 44, 222
Hin1II CATG 2 cut(s) 175, 362
Hin6I GCGC 2 cut(s) 103, 260
HinP1I GCGC 2 cut(s) 103, 260
HinfI GANTC 2 cut(s) 132, 395
HpaII CCGG 2 cut(s) 28, 544
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 444
Hpy188I TCNGA 2 cut(s) 131, 230
Hpy188III TCNNGA 1 cut(s) 306
Hpy8I GTNNAC 1 cut(s) 444
Hpy99I CGWCG 2 cut(s) 46, 224
HpyAV CCTTC 4 cut(s) 79, 151, 172, 235
HpyCH4III ACNGT 2 cut(s) 82, 319
HpyCH4IV ACGT 2 cut(s) 440, 477
HpyCH4V TGCA 3 cut(s) 4, 251, 465
HpyF10VI GCNNNNNNNGC 6 cut(s) 94, 257, 398, 407, 455, 479
HpyF3I CTNAG 2 cut(s) 15, 98
HpySE526I ACGT 2 cut(s) 440, 477
Hsp92I GRCGYC 2 cut(s) 44, 222
Hsp92II CATG 2 cut(s) 175, 362
HspAI GCGC 2 cut(s) 103, 260
KpnI GGTACC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 2 cut(s) 54, 361
LmnI GCTCC 2 cut(s) 242, 311
Lsp1109I GCAGC 1 cut(s) 31
MaeII ACGT 2 cut(s) 440, 477
MalI GATC 2 cut(s) 56, 363
MboI GATC 2 cut(s) 54, 361
MboII GAAGA 4 cut(s) 118, 160, 265, 313
MhlI GDGCHC 1 cut(s) 572
MlsI TGGCCA 1 cut(s) 482
MluI ACGCGT 1 cut(s) 456
MluNI TGGCCA 1 cut(s) 482
Mox20I TGGCCA 1 cut(s) 482
MroXI GAANNNNTTC 1 cut(s) 458
MscI TGGCCA 1 cut(s) 482
MslI CAYNNNNRTG 1 cut(s) 170
Msp20I TGGCCA 1 cut(s) 482
MspI CCGG 2 cut(s) 28, 544
MspR9I CCNGG 4 cut(s) 451, 491, 515, 545
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 3 cut(s) 451, 491, 515
MvnI CGCG 3 cut(s) 189, 374, 458
MwoI GCNNNNNNNGC 6 cut(s) 94, 257, 398, 407, 455, 479
NciI CCSGG 1 cut(s) 545
NdeII GATC 2 cut(s) 54, 361
NlaIII CATG 2 cut(s) 175, 362
NlaIV GGNNCC 3 cut(s) 193, 212, 313
NspV TTCGAA 1 cut(s) 276
PasI CCCWGGG 1 cut(s) 490
PcsI WCGNNNNNNNCGW 2 cut(s) 50, 413
PctI GAATGC 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 458
PfeI GAWTC 2 cut(s) 132, 395
PkrI GCNGC 2 cut(s) 21, 191
PmaCI CACGTG 1 cut(s) 441
PmlI CACGTG 1 cut(s) 441
Ppu21I YACGTR 1 cut(s) 441
Psp6I CCWGG 3 cut(s) 449, 489, 513
PspCI CACGTG 1 cut(s) 441
PspGI CCWGG 3 cut(s) 449, 489, 513
PspN4I GGNNCC 3 cut(s) 193, 212, 313
PspPI GGNCC 1 cut(s) 191
RsaI GTAC 4 cut(s) 50, 212, 377, 445
RsaNI GTAC 4 cut(s) 49, 211, 376, 444
RseI CAYNNNNRTG 1 cut(s) 170
SatI GCNGC 2 cut(s) 20, 190
Sau3AI GATC 2 cut(s) 54, 361
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 4 cut(s) 451, 491, 515, 545
SduI GDGCHC 1 cut(s) 572
SetI ASST 8 cut(s) 99, 117, 149, 333, 342, 369, 443, 480
SfuI TTCGAA 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 170
SsiI CCGC 4 cut(s) 189, 392, 401, 473
StyD4I CCNGG 4 cut(s) 449, 489, 513, 543
TaaI ACNGT 2 cut(s) 82, 319
TaiI ACGT 2 cut(s) 443, 480
TaqI TCGA 3 cut(s) 219, 276, 348
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 2 cut(s) 132, 395
TscAI CASTG 1 cut(s) 322
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 4 cut(s) 154, 160, 547, 569
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.