Rorug01G0330000

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016116
Physical Location & Seq
Forward (+)
44875961 .. 44878693
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0330000.1

Sequence Viewer

Length: 684 bp
ATGGCTGGCTTCCCAGAAGAAACAGTTAAACTGGACTTTAGAATGGGAAAAAACAGGCAATGGCAGTCTCCCCAAGCTAAAGACTCCCCCTCTGAGGAGCGTATTGAAAGACGTTTGACATATCTCAAAAGCCAAAAAGAGAAACTCGAATCAATGTCTGTGTTCAAGGTGTGCGAAGCGGTGGGAATAGAGAATTTCACACTAAATCTCCTCCAAAAGATAGTCTGTGACTGTCGGCGTTCTGCTCCGGTCATCCTTGGCCAAGCCCAGGTTTCATATCTCTTTAGAAAGCCTGAGGTTTCAAATATAGTAATTTTCAAGGCATCTCCAATGTTGCAAGTAATTGAATTGTTGTTTGTTGTTTTTAAAAACTTTGTGATATGTGGTGTGGACACTTTCTCCTTGGGTATTCTGTGCTCGGGCGATGTATTTATAAAAAGAATTGTGGCCAAGGCTGCAGATTATGTTCAGGTACATGATGAGAAATTGTTGGTGAATGGTGAAATTCAAAATGAAAATTACATATTGGAGCCTTTTACCTATGAAATGGAACCAATTCTCATTCCAGAAGGCTATATCTTTGTGATGGGGGACAACCGCAACAACAATTTTGACTCTCATAACTGGCCGTTCACTACAGTGCACAAAACAAGTCTGTTTCAGAATTTAAAAGCACATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0048037 GO:0051536 GO:0051540
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF588

Protein Analysis

227

Amino Acids

26.15

Weight (kDa)

6.45

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S26 PF10502 89 - 212 1.1e-16 Signal peptidase, peptidase S26
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G55390
fragaria_vesca FvH4_7g22070
malus_domestica MD01G1125700.v1.1
prunus_persica Prupe.2G232700_v2.0.a1
pyrus_communis pycom01g15150
rosa_chinensis RchiOBHm_Chr1g0366461
rosa_laevigata RLG00000027346
rosa_roxburghii Rroxscaffold_4G00289920 Rroxscaffold_4G00290180
rosa_rugosa Rorug01G0330000
rosa_samantha Rh1AG337900 Rh1BG299400 Rh1CG314500 Rh1DG331200
rosa_wichuraiana Rw1G029920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 434
AciI CCGC 2 cut(s) 179, 598
AcoI YGGCCR 3 cut(s) 259, 447, 626
AcsI RAATTY 3 cut(s) 193, 504, 664
AfaI GTAC 1 cut(s) 474
AfiI CCNNNNNNNGG 2 cut(s) 94, 268
AgsI TTSAA 6 cut(s) 107, 166, 303, 319, 347, 509
AjnI CCWGG 1 cut(s) 267
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
Alw21I GWGCWC 2 cut(s) 419, 645
Alw26I GTCTC 1 cut(s) 72
Alw44I GTGCAC 1 cut(s) 641
Ama87I CYCGRG 1 cut(s) 418
AoxI GGCC 3 cut(s) 259, 447, 626
ApaLI GTGCAC 1 cut(s) 641
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 3 cut(s) 193, 504, 664
Asp700I GAANNNNTTC 1 cut(s) 555
AsuHPI GGTGA 2 cut(s) 505, 512
AvaI CYCGRG 1 cut(s) 418
AxyI CCTNAGG 1 cut(s) 294
BaeGI GKGCMC 1 cut(s) 645
BalI TGGCCA 2 cut(s) 261, 449
Bbv12I GWGCWC 2 cut(s) 419, 645
BbvI GCAGC 1 cut(s) 442
BccI CCATC 1 cut(s) 580
BceAI ACGGC 1 cut(s) 613
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 72
BfmI CTRYAG 2 cut(s) 456, 636
BisI GCNGC 1 cut(s) 456
BlsI GCNGC 1 cut(s) 457
Bme1390I CCNGG 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 418
BmiI GGNNCC 2 cut(s) 531, 552
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 332
BsaJI CCNNGG 4 cut(s) 256, 267, 402, 450
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 4 cut(s) 192, 222, 383, 413
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 268
Bse1I ACTGG 2 cut(s) 36, 629
Bse21I CCTNAGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 4 cut(s) 256, 267, 402, 450
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 94, 268
BseMI GCAATG 1 cut(s) 65
BseMII CTCAG 2 cut(s) 84, 285
BseNI ACTGG 2 cut(s) 36, 629
BseRI GAGGAG 2 cut(s) 110, 200
BseSI GKGCMC 1 cut(s) 645
BseXI GCAGC 1 cut(s) 442
BshFI GGCC 3 cut(s) 261, 449, 628
BsiHKAI GWGCWC 2 cut(s) 419, 645
BsiHKCI CYCGRG 1 cut(s) 418
BsiSI CCGG 1 cut(s) 248
BslFI GGGAC 1 cut(s) 605
BslI CCNNNNNNNGG 2 cut(s) 94, 268
BsmAI GTCTC 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 605
BsnI GGCC 3 cut(s) 261, 449, 628
BsoBI CYCGRG 1 cut(s) 418
Bsp1286I GDGCHC 2 cut(s) 419, 645
BspACI CCGC 2 cut(s) 179, 598
BspANI GGCC 3 cut(s) 261, 449, 628
BspCNI CTCAG 2 cut(s) 85, 286
BspLI GGNNCC 2 cut(s) 531, 552
BspMAI CTGCAG 1 cut(s) 460
BsrDI GCAATG 1 cut(s) 65
BsrI ACTGG 2 cut(s) 36, 629
BssECI CCNNGG 4 cut(s) 256, 267, 402, 450
BssT1I CCWWGG 3 cut(s) 256, 402, 450
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 3 cut(s) 25, 233, 640
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 93, 294
BstF5I GGATG 1 cut(s) 252
BstMAI GTCTC 1 cut(s) 72
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 2 cut(s) 456, 636
BstSLI GKGCMC 1 cut(s) 645
BstV1I GCAGC 1 cut(s) 442
Bsu36I CCTNAGG 1 cut(s) 294
BsuRI GGCC 3 cut(s) 261, 449, 628
BtgZI GCGATG 1 cut(s) 438
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 1 cut(s) 645
Cac8I GCNNGC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 473
CviAII CATG 1 cut(s) 476
CviQI GTAC 1 cut(s) 473
DdeI CTNAG 2 cut(s) 93, 294
DraI TTTAAA 2 cut(s) 367, 669
EaeI YGGCCR 3 cut(s) 259, 447, 626
Eco130I CCWWGG 3 cut(s) 256, 402, 450
Eco81I CCTNAGG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 3 cut(s) 256, 402, 450
ErhI CCWWGG 3 cut(s) 256, 402, 450
FaeI CATG 1 cut(s) 479
FaqI GGGAC 1 cut(s) 605
FatI CATG 1 cut(s) 475
Fnu4HI GCNGC 1 cut(s) 456
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 456
GluI GCNGC 1 cut(s) 456
HaeIII GGCC 3 cut(s) 261, 449, 628
HapII CCGG 1 cut(s) 248
Hin1II CATG 1 cut(s) 479
HinfI GANTC 3 cut(s) 83, 149, 614
HpaII CCGG 1 cut(s) 248
HphI GGTGA 2 cut(s) 505, 512
Hpy166II GTNNAC 3 cut(s) 391, 633, 643
Hpy188I TCNGA 2 cut(s) 94, 663
Hpy188III TCNNGA 1 cut(s) 566
Hpy8I GTNNAC 3 cut(s) 391, 633, 643
HpyAV CCTTC 1 cut(s) 563
HpyCH4III ACNGT 3 cut(s) 25, 233, 640
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 3 cut(s) 337, 458, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpyF3I CTNAG 2 cut(s) 93, 294
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 1 cut(s) 479
LmnI GCTCC 3 cut(s) 97, 250, 529
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 1 cut(s) 332
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 227
MboII GAAGA 1 cut(s) 29
MhlI GDGCHC 2 cut(s) 419, 645
MlsI TGGCCA 2 cut(s) 261, 449
MluNI TGGCCA 2 cut(s) 261, 449
MlyI GAGTC 2 cut(s) 77, 608
MnlI CCTC 4 cut(s) 88, 100, 221, 289
Mox20I TGGCCA 2 cut(s) 261, 449
MroXI GAANNNNTTC 1 cut(s) 555
MscI TGGCCA 2 cut(s) 261, 449
MseI TTAA 3 cut(s) 27, 366, 668
MslI CAYNNNNRTG 1 cut(s) 638
Msp20I TGGCCA 2 cut(s) 261, 449
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 455
NlaIII CATG 1 cut(s) 479
NlaIV GGNNCC 2 cut(s) 531, 552
NmuCI GTSAC 1 cut(s) 227
OliI CACNNNNGTG 1 cut(s) 638
PdmI GAANNNNTTC 1 cut(s) 555
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 457
PleI GAGTC 2 cut(s) 77, 608
PpsI GAGTC 2 cut(s) 77, 608
PsiI TTATAA 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 2 cut(s) 531, 552
PstI CTGCAG 1 cut(s) 460
RsaI GTAC 1 cut(s) 474
RsaNI GTAC 1 cut(s) 473
RseI CAYNNNNRTG 1 cut(s) 638
SaqAI TTAA 3 cut(s) 27, 366, 668
SatI GCNGC 1 cut(s) 456
SchI GAGTC 2 cut(s) 77, 608
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 2 cut(s) 419, 645
SetI ASST 7 cut(s) 79, 115, 171, 273, 300, 474, 542
SfaNI GCATC 1 cut(s) 332
SfcI CTRYAG 2 cut(s) 456, 636
SmiMI CAYNNNNRTG 1 cut(s) 638
SsiI CCGC 2 cut(s) 179, 598
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 3 cut(s) 256, 402, 450
TaaI ACNGT 3 cut(s) 25, 233, 640
TaiI ACGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 147
TfiI GAWTC 1 cut(s) 149
Tru1I TTAA 3 cut(s) 27, 366, 668
Tru9I TTAA 3 cut(s) 27, 366, 668
TscAI CASTG 1 cut(s) 645
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 1 cut(s) 455
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 3 cut(s) 264, 528, 558
TspRI CASTG 1 cut(s) 645
VneI GTGCAC 1 cut(s) 641
XapI RAATTY 3 cut(s) 193, 504, 664
XmnI GAANNNNTTC 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.