Prupe.2G263000_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0019791
Physical Location & Seq
Forward (+)
27131290 .. 27131780
491 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G263000.1

Sequence Viewer

Length: 255 bp
ATGGGTAGGAGGGAGCTCTTGAATGCGCTACTAACTTTGCTGCTTCTTCTGTCCATGGTGTTTCACAGGGGAGCGGCTATGATCAGACGCATTGGCAAGTATCAACAACCGGGAAGCACTAGCCTAAAAGCGTCGAGAAAGGGTTTGGATGTGAAAGACGAATACACGAAAGAAGCCGGTGACAATAATGGCAGCGGAGATTATGATTTTTATGGAGGGCACGGTGATGTCCCGAGCCCCGGCGTTGGTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.11

Weight (kDa)

9.1

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019791)

Species Orthologous Gene IDs
prunus_persica Prupe.2G263000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372041
rosa_laevigata RLG00000026925
rosa_roxburghii Rroxscaffold_4G00285300
rosa_rugosa Rorug01G0369100
rosa_samantha Rh1CG354500 Rh1DG372300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 74
AciI CCGC 2 cut(s) 74, 195
AfiI CCNNNNNNNGG 2 cut(s) 239, 245
AgsI TTSAA 1 cut(s) 22
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw21I GWGCWC 1 cut(s) 18
Ama87I CYCGRG 1 cut(s) 232
ApeKI GCWGC 2 cut(s) 40, 192
AspLEI GCGC 1 cut(s) 28
AsuC2I CCSGG 2 cut(s) 111, 240
AsuHPI GGTGA 2 cut(s) 191, 236
AvaI CYCGRG 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 222
BanII GRGCYC 2 cut(s) 18, 239
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 2 cut(s) 27, 204
BclI TGATCA 1 cut(s) 81
BcnI CCSGG 2 cut(s) 111, 240
BfaI CTAG 2 cut(s) 120, 253
BisI GCNGC 3 cut(s) 41, 75, 193
BlsI GCNGC 3 cut(s) 42, 76, 194
Bme1390I CCNGG 2 cut(s) 111, 240
BmeT110I CYCGRG 1 cut(s) 232
BmrFI CCNGG 2 cut(s) 111, 240
BpuMI CCSGG 2 cut(s) 111, 240
BsaJI CCNNGG 2 cut(s) 54, 238
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 245
Bse118I RCCGGY 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 54, 238
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 2 cut(s) 239, 245
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 2 cut(s) 27, 204
BsiHKAI GWGCWC 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 232
BsiSI CCGG 3 cut(s) 110, 177, 240
BslFI GGGAC 1 cut(s) 215
BslI CCNNNNNNNGG 2 cut(s) 239, 245
BsmFI GGGAC 1 cut(s) 215
BsmI GAATGC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 232
Bsp1286I GDGCHC 3 cut(s) 18, 222, 239
Bsp143I GATC 1 cut(s) 81
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 2 cut(s) 74, 195
BsrBI CCGCTC 1 cut(s) 74
BsrFI RCCGGY 1 cut(s) 176
BssAI RCCGGY 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 54, 238
BssMI GATC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 224
BstDSI CCRYGG 1 cut(s) 54
BstF5I GGATG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstSCI CCNGG 2 cut(s) 109, 238
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 27, 204
BtgI CCRYGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 154
CfoI GCGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 176
CseI GACGC 2 cut(s) 96, 120
CviAII CATG 1 cut(s) 55
CviJI RGCY 5 cut(s) 16, 77, 123, 176, 237
CviKI_1 RGCY 5 cut(s) 16, 77, 123, 176, 237
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 54
Eco24I GRGCYC 2 cut(s) 18, 239
Eco53kI GAGCTC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 232
EcoICRI GAGCTC 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 54
EcoT38I GRGCYC 2 cut(s) 18, 239
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 58
FaiI YATR 4 cut(s) 56, 80, 204, 213
FaqI GGGAC 1 cut(s) 215
FatI CATG 1 cut(s) 54
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 41, 75, 193
FokI GGATG 1 cut(s) 161
FriOI GRGCYC 2 cut(s) 18, 239
Fsp4HI GCNGC 3 cut(s) 41, 75, 193
FspBI CTAG 2 cut(s) 120, 253
GlaI GCGC 1 cut(s) 27
GluI GCNGC 3 cut(s) 41, 75, 193
HapII CCGG 3 cut(s) 110, 177, 240
HgaI GACGC 2 cut(s) 96, 120
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HpaII CCGG 3 cut(s) 110, 177, 240
HphI GGTGA 2 cut(s) 191, 236
Hpy188I TCNGA 1 cut(s) 86
Hpy188III TCNNGA 3 cut(s) 19, 135, 232
Hpy99I CGWCG 1 cut(s) 136
HpyCH4III ACNGT 1 cut(s) 224
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 2 cut(s) 13, 71
LpnPI CCDG 3 cut(s) 52, 123, 190
Lsp1109I GCAGC 2 cut(s) 27, 204
MaeI CTAG 2 cut(s) 120, 253
MaeIII GTNAC 2 cut(s) 179, 248
MalI GATC 1 cut(s) 83
MbiI CCGCTC 1 cut(s) 74
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 38
MhlI GDGCHC 3 cut(s) 18, 222, 239
MnlI CCTC 2 cut(s) 3, 209
MslI CAYNNNNRTG 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 195
MspI CCGG 3 cut(s) 110, 177, 240
MspR9I CCNGG 2 cut(s) 111, 240
Mva1269I GAATGC 1 cut(s) 28
NciI CCSGG 2 cut(s) 111, 240
NcoI CCATGG 1 cut(s) 54
NdeII GATC 1 cut(s) 81
NlaIII CATG 1 cut(s) 58
NmuCI GTSAC 2 cut(s) 179, 248
PctI GAATGC 1 cut(s) 28
PkrI GCNGC 3 cut(s) 42, 76, 194
Psp124BI GAGCTC 1 cut(s) 18
RseI CAYNNNNRTG 1 cut(s) 225
SacI GAGCTC 1 cut(s) 18
SatI GCNGC 3 cut(s) 41, 75, 193
Sau3AI GATC 1 cut(s) 81
ScrFI CCNGG 2 cut(s) 111, 240
SduI GDGCHC 3 cut(s) 18, 222, 239
SetI ASST 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 225
SsiI CCGC 2 cut(s) 74, 195
SspMI CTAG 2 cut(s) 120, 253
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 2 cut(s) 109, 238
StyI CCWWGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 134
TauI GCSGC 1 cut(s) 77
TseFI GTSAC 2 cut(s) 179, 248
TseI GCWGC 2 cut(s) 40, 192
Tsp45I GTSAC 2 cut(s) 179, 248
XspI CTAG 2 cut(s) 120, 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.