Rh1DG372300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0019791
Physical Location & Seq
Forward (+)
59653585 .. 59657948
4364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG372300.1

Sequence Viewer

Length: 366 bp
ATGGCTAGGAGGATGGAGTGCTGCCTCATGAGTATTGTTGTGCTACTGGTGCTGGTTCTTCTGTCTTCTTCTACGGCATTTCCGAGCGCAGCAACATCTACCGGAGATGGCTTTACTGGAACAACGATGTCGTCTCAAAAGGGTATAGAAGATACGGATCATGAAGAAGCTGCTGCTAATTATGGTGGAGATGACGATTATTATCGACAGTATGGTGATGTTCCAAGCCCTGGAGTTGCTTCTGATGTTGAAGCACACAGTGGTTTATTGATGGTTGATTTCACAAAAGGCAGAATCTTGAAGAAAGGAGCTGGCTTTGGGACAAAAATGGAGGTCGCAATCTTCATTCTCAGCACAGCGTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.74

Weight (kDa)

4.67

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019791)

Species Orthologous Gene IDs
prunus_persica Prupe.2G263000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372041
rosa_laevigata RLG00000026925
rosa_roxburghii Rroxscaffold_4G00285300
rosa_rugosa Rorug01G0369100
rosa_samantha Rh1CG354500 Rh1DG372300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 230
AclWI GGATC 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 230
AgsI TTSAA 2 cut(s) 251, 301
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 2 cut(s) 170, 311
AluI AGCT 2 cut(s) 170, 311
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 1 cut(s) 165
ApeKI GCWGC 4 cut(s) 21, 89, 170, 173
AspLEI GCGC 1 cut(s) 89
AsuHPI GGTGA 1 cut(s) 227
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 4 cut(s) 8, 101, 157, 160
BccI CCATC 3 cut(s) 7, 101, 265
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 138
BfaI CTAG 1 cut(s) 6
BisI GCNGC 4 cut(s) 22, 90, 171, 174
BlsI GCNGC 4 cut(s) 23, 91, 172, 175
Bme1390I CCNGG 1 cut(s) 231
BmrFI CCNGG 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 252
BsaBI GATNNNNATC 2 cut(s) 156, 201
BsaJI CCNNGG 1 cut(s) 229
BsaWI WCCGGW 1 cut(s) 101
Bsc4I CCNNNNNNNGG 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 51, 121
Bse8I GATNNNNATC 2 cut(s) 156, 201
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 1 cut(s) 18
BseJI GATNNNNATC 2 cut(s) 156, 201
BseLI CCNNNNNNNGG 1 cut(s) 230
BseMII CTCAG 1 cut(s) 364
BseNI ACTGG 2 cut(s) 51, 121
BseXI GCAGC 4 cut(s) 8, 101, 157, 160
BsiSI CCGG 1 cut(s) 102
BslFI GGGAC 1 cut(s) 334
BslI CCNNNNNNNGG 1 cut(s) 230
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 334
Bsp143I GATC 1 cut(s) 157
BspCNI CTCAG 1 cut(s) 363
BspHI TCATGA 2 cut(s) 27, 160
BspPI GGATC 1 cut(s) 165
BsrI ACTGG 2 cut(s) 51, 121
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 2 cut(s) 210, 260
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 1 cut(s) 160
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 1 cut(s) 157
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNI CCWGG 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 4 cut(s) 8, 101, 157, 160
BstV2I GAAGAC 1 cut(s) 57
BtsCI GGATG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 313
CciI TCATGA 2 cut(s) 27, 160
CfoI GCGC 1 cut(s) 89
CseI GACGC 1 cut(s) 348
CviAII CATG 2 cut(s) 28, 161
CviJI RGCY 6 cut(s) 5, 111, 170, 228, 311, 315
CviKI_1 RGCY 6 cut(s) 5, 111, 170, 228, 311, 315
DdeI CTNAG 1 cut(s) 350
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
DraIII CACNNNGTG 1 cut(s) 260
EcoRII CCWGG 1 cut(s) 229
Esp3I CGTCTC 1 cut(s) 138
FaeI CATG 2 cut(s) 31, 164
FaiI YATR 5 cut(s) 29, 146, 162, 183, 213
FaqI GGGAC 1 cut(s) 334
FatI CATG 2 cut(s) 27, 160
Fnu4HI GCNGC 4 cut(s) 22, 90, 171, 174
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 4 cut(s) 22, 90, 171, 174
FspBI CTAG 1 cut(s) 6
GlaI GCGC 1 cut(s) 88
GluI GCNGC 4 cut(s) 22, 90, 171, 174
GsuI CTGGAG 1 cut(s) 252
HapII CCGG 1 cut(s) 102
HgaI GACGC 1 cut(s) 348
HhaI GCGC 1 cut(s) 89
Hin1II CATG 2 cut(s) 31, 164
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HinfI GANTC 1 cut(s) 294
HpaII CCGG 1 cut(s) 102
HphI GGTGA 1 cut(s) 227
Hpy188I TCNGA 2 cut(s) 84, 244
Hpy188III TCNNGA 4 cut(s) 28, 161, 298, 363
Hpy99I CGWCG 1 cut(s) 364
HpyCH4III ACNGT 2 cut(s) 210, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 350
Hsp92II CATG 2 cut(s) 31, 164
HspAI GCGC 1 cut(s) 87
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 7 cut(s) 32, 38, 102, 115, 216, 243, 297
Lsp1109I GCAGC 4 cut(s) 8, 101, 157, 160
MaeI CTAG 1 cut(s) 6
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 7 cut(s) 50, 57, 60, 161, 176, 313, 334
MluCI AATT 1 cut(s) 178
MnlI CCTC 3 cut(s) 3, 35, 325
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 1 cut(s) 49
NdeII GATC 1 cut(s) 157
NlaIII CATG 2 cut(s) 31, 164
PagI TCATGA 2 cut(s) 27, 160
PcsI WCGNNNNNNNCGW 1 cut(s) 80
PfeI GAWTC 1 cut(s) 294
PflMI CCANNNNNTGG 1 cut(s) 230
PkrI GCNGC 4 cut(s) 23, 91, 172, 175
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
SatI GCNGC 4 cut(s) 22, 90, 171, 174
Sau3AI GATC 1 cut(s) 157
ScrFI CCNGG 1 cut(s) 231
SetI ASST 3 cut(s) 172, 313, 336
Sse9I AATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 2 cut(s) 210, 260
TaqI TCGA 1 cut(s) 205
TasI AATT 1 cut(s) 178
TfiI GAWTC 1 cut(s) 294
TscAI CASTG 1 cut(s) 265
TseI GCWGC 4 cut(s) 21, 89, 170, 173
TspDTI ATGAA 2 cut(s) 177, 334
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 265
Van91I CCANNNNNTGG 1 cut(s) 230
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.