RLG00000026925

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0019791
Physical Location & Seq
Reverse (-)
7052028 .. 7053144
1117 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026925

Sequence Viewer

Length: 378 bp
ATGATGATGGCTAGGAGGACGGAGTACTGCCTCATGAGTATTGTTGTGATACTGGTGCTGGTTCTTCTGTCTTCTTCTACGGCGTTTCCGAGCGCAGCAACATCTACCGGAGATGGCTTTACTGGAACAACGATGTCGTCTCAAAAGGGTATAGAAGATACGGATCATGAAGAAGCTGCTGCTAATTATGGTGGAGATGACGATTATTATCGACAGTCTTCTCAATTTAATACCTGCAACAATATCTTGCTATTGAGGTCTGCAACCGTTGGCCAGGCCTTGCACTATAGCATGGTGTTGGCGCACCCTACACACTCAGTTCGAAGTTTTATGATTTATGGCCAAGCATGTTACAACCCTACTATTATGGATGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

13.64

Weight (kDa)

5.06

Isoelectric Point (pI)

63.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019791)

Species Orthologous Gene IDs
prunus_persica Prupe.2G263000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372041
rosa_laevigata RLG00000026925
rosa_roxburghii Rroxscaffold_4G00285300
rosa_rugosa Rorug01G0369100
rosa_samantha Rh1CG354500 Rh1DG372300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 242
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 2 cut(s) 271, 340
AfaI GTAC 1 cut(s) 26
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 171
AoxI GGCC 3 cut(s) 271, 276, 340
ApeKI GCWGC 3 cut(s) 95, 176, 179
AspLEI GCGC 2 cut(s) 95, 304
AsuII TTCGAA 1 cut(s) 322
BalI TGGCCA 2 cut(s) 273, 342
BbsI GAAGAC 2 cut(s) 63, 210
BbvI GCAGC 3 cut(s) 107, 163, 166
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 286
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 3 cut(s) 96, 177, 180
BlsI GCNGC 3 cut(s) 97, 178, 181
BmcAI AGTACT 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 275
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 2 cut(s) 63, 210
Bpu14I TTCGAA 1 cut(s) 322
BsaBI GATNNNNATC 2 cut(s) 162, 207
BsaWI WCCGGW 1 cut(s) 107
Bse1I ACTGG 2 cut(s) 57, 127
Bse8I GATNNNNATC 2 cut(s) 162, 207
BseBI CCWGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 376
BseJI GATNNNNATC 2 cut(s) 162, 207
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 2 cut(s) 57, 127
BseXI GCAGC 3 cut(s) 107, 163, 166
BshFI GGCC 3 cut(s) 273, 278, 342
BsiSI CCGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 3 cut(s) 273, 278, 342
Bsp119I TTCGAA 1 cut(s) 322
Bsp143I GATC 1 cut(s) 163
BspANI GGCC 3 cut(s) 273, 278, 342
BspCNI CTCAG 1 cut(s) 329
BspHI TCATGA 2 cut(s) 33, 166
BspMI ACCTGC 1 cut(s) 242
BspPI GGATC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 322
BsrI ACTGG 2 cut(s) 57, 127
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 2 cut(s) 216, 268
BstBI TTCGAA 1 cut(s) 322
BstDEI CTNAG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 376
BstHHI GCGC 2 cut(s) 95, 304
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 273
BstSFI CTRYAG 1 cut(s) 286
BstV1I GCAGC 3 cut(s) 107, 163, 166
BstV2I GAAGAC 2 cut(s) 63, 210
BsuRI GGCC 3 cut(s) 273, 278, 342
BtsCI GGATG 1 cut(s) 376
BveI ACCTGC 1 cut(s) 242
CciI TCATGA 2 cut(s) 33, 166
CfoI GCGC 2 cut(s) 95, 304
Csp6I GTAC 1 cut(s) 25
CviAII CATG 4 cut(s) 34, 167, 292, 348
CviJI RGCY 6 cut(s) 11, 117, 176, 273, 278, 342
CviKI_1 RGCY 6 cut(s) 11, 117, 176, 273, 278, 342
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 1 cut(s) 316
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 2 cut(s) 271, 340
Eco147I AGGCCT 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 4 cut(s) 37, 170, 295, 351
FatI CATG 4 cut(s) 33, 166, 291, 347
Fnu4HI GCNGC 3 cut(s) 96, 177, 180
Fsp4HI GCNGC 3 cut(s) 96, 177, 180
FspBI CTAG 1 cut(s) 12
GlaI GCGC 2 cut(s) 94, 303
GluI GCNGC 3 cut(s) 96, 177, 180
HaeIII GGCC 3 cut(s) 273, 278, 342
HapII CCGG 1 cut(s) 108
HhaI GCGC 2 cut(s) 95, 304
Hin1II CATG 4 cut(s) 37, 170, 295, 351
Hin6I GCGC 2 cut(s) 93, 302
HinP1I GCGC 2 cut(s) 93, 302
HpaII CCGG 1 cut(s) 108
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 2 cut(s) 34, 167
HpyCH4III ACNGT 2 cut(s) 216, 268
HpyCH4V TGCA 3 cut(s) 237, 263, 283
HpyF3I CTNAG 1 cut(s) 316
Hsp92II CATG 4 cut(s) 37, 170, 295, 351
HspAI GCGC 2 cut(s) 93, 302
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 7 cut(s) 38, 44, 108, 121, 247, 260, 287
Lsp1109I GCAGC 3 cut(s) 107, 163, 166
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 350
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 6 cut(s) 56, 63, 66, 167, 182, 210
MlsI TGGCCA 2 cut(s) 273, 342
MluCI AATT 2 cut(s) 184, 224
MluNI TGGCCA 2 cut(s) 273, 342
MnlI CCTC 3 cut(s) 9, 41, 249
Mox20I TGGCCA 2 cut(s) 273, 342
MscI TGGCCA 2 cut(s) 273, 342
MseI TTAA 1 cut(s) 228
Msp20I TGGCCA 2 cut(s) 273, 342
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
NdeII GATC 1 cut(s) 163
NlaIII CATG 4 cut(s) 37, 170, 295, 351
NspI RCATGY 1 cut(s) 351
NspV TTCGAA 1 cut(s) 322
PagI TCATGA 2 cut(s) 33, 166
PceI AGGCCT 1 cut(s) 278
PcsI WCGNNNNNNNCGW 1 cut(s) 86
PkrI GCNGC 3 cut(s) 97, 178, 181
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 3 cut(s) 96, 177, 180
Sau3AI GATC 1 cut(s) 163
ScaI AGTACT 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 275
SetI ASST 3 cut(s) 178, 236, 260
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 322
Sse9I AATT 2 cut(s) 184, 224
SseBI AGGCCT 1 cut(s) 278
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 1 cut(s) 278
StyD4I CCNGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 216, 268
TaqI TCGA 2 cut(s) 211, 322
TasI AATT 2 cut(s) 184, 224
TatI WGTACW 1 cut(s) 24
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseI GCWGC 3 cut(s) 95, 176, 179
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 2 cut(s) 35, 176
XceI RCATGY 1 cut(s) 351
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.