zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G25610 AT4G25610 AT4G25610 |
| fragaria_vesca | FvH4_7g29860 FvH4_7g29860 FvH4_7g29860 FvH4_7g29860 |
| malus_domestica | MD01G1205100.v1.1 MD07G1273500.v1.1 |
| prunus_persica | Prupe.2G297500_v2.0.a1 |
| pyrus_communis | pycom01g21470 pycom07g25010 |
| rosa_chinensis | RchiOBHm_Chr1g0377821 |
| rosa_laevigata | RLG00000026495 |
| rosa_multiflora | Rmu_sc0004824.1_g000006 |
| rosa_roxburghii | Rroxscaffold_4G00281030 |
| rosa_rugosa | Rorug01G0405300 |
| rosa_samantha | Rh1AG427000 Rh1BG382300 Rh1CG396200 Rh1DG413300 |
| rosa_wichuraiana | Rw1G037160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1168 |
| Acc36I | ACCTGC | 1 cut(s) | 1168 |
| AccB1I | GGYRCC | 1 cut(s) | 1896 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2018 |
| AccII | CGCG | 1 cut(s) | 246 |
| AciI | CCGC | 5 cut(s) | 244, 1198, 1734, 1805, 1847 |
| AclWI | GGATC | 3 cut(s) | 882, 1055, 1068 |
| AcoI | YGGCCR | 1 cut(s) | 1470 |
| AcsI | RAATTY | 2 cut(s) | 1079, 1506 |
| AcuI | CTGAAG | 2 cut(s) | 774, 945 |
| AfaI | GTAC | 4 cut(s) | 697, 1368, 1554, 2039 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 126, 2018, 2057 |
| AflII | CTTAAG | 1 cut(s) | 17 |
| AflIII | ACRYGT | 1 cut(s) | 283 |
| AjiI | CACGTC | 1 cut(s) | 1663 |
| AjnI | CCWGG | 9 cut(s) | 119, 184, 421, 466, 542, 561, 731, 1767, 1892 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 392, 424 |
| AleI | CACNNNNGTG | 2 cut(s) | 282, 1828 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1603, 1635, 1992, 2024 |
| Alw21I | GWGCWC | 4 cut(s) | 291, 822, 1235, 2093 |
| Alw44I | GTGCAC | 1 cut(s) | 287 |
| AlwI | GGATC | 3 cut(s) | 882, 1055, 1068 |
| AoxI | GGCC | 5 cut(s) | 21, 191, 667, 1470, 1592 |
| ApaLI | GTGCAC | 1 cut(s) | 287 |
| ApeKI | GCWGC | 5 cut(s) | 386, 797, 1292, 1956, 2024 |
| ApoI | RAATTY | 2 cut(s) | 1079, 1506 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 64, 1447, 1866 |
| AspS9I | GGNCC | 4 cut(s) | 139, 192, 1112, 1619 |
| AsuHPI | GGTGA | 3 cut(s) | 736, 1117, 1757 |
| AvaII | GGWCC | 3 cut(s) | 139, 1112, 1619 |
| BaeGI | GKGCMC | 2 cut(s) | 291, 1901 |
| BamHI | GGATCC | 1 cut(s) | 1060 |
| BanI | GGYRCC | 1 cut(s) | 1896 |
| BanII | GRGCYC | 2 cut(s) | 822, 1235 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2057, 2089 |
| BbsI | GAAGAC | 2 cut(s) | 280, 420 |
| Bbv12I | GWGCWC | 4 cut(s) | 291, 822, 1235, 2093 |
| BbvI | GCAGC | 5 cut(s) | 373, 784, 1279, 1968, 2011 |
| BccI | CCATC | 7 cut(s) | 269, 300, 641, 1167, 1337, 1724, 1736 |
| BceAI | ACGGC | 3 cut(s) | 1142, 1785, 1933 |
| BciT130I | CCWGG | 9 cut(s) | 121, 186, 423, 468, 544, 563, 733, 1769, 1894 |
| BfaI | CTAG | 7 cut(s) | 341, 534, 779, 954, 1299, 1932, 2101 |
| BfmI | CTRYAG | 1 cut(s) | 268 |
| BfrI | CTTAAG | 1 cut(s) | 17 |
| BfuAI | ACCTGC | 1 cut(s) | 1168 |
| BisI | GCNGC | 7 cut(s) | 387, 798, 1293, 1806, 1848, 1957, 2025 |
| BlpI | GCTNAGC | 1 cut(s) | 933 |
| BlsI | GCNGC | 7 cut(s) | 388, 799, 1294, 1807, 1849, 1958, 2026 |
| Bme1390I | CCNGG | 9 cut(s) | 121, 186, 423, 468, 544, 563, 733, 1769, 1894 |
| Bme18I | GGWCC | 3 cut(s) | 139, 1112, 1619 |
| BmgBI | CACGTC | 1 cut(s) | 1663 |
| BmgT120I | GGNCC | 4 cut(s) | 139, 192, 1112, 1619 |
| BmiI | GGNNCC | 6 cut(s) | 141, 1062, 1423, 1620, 1898, 2010 |
| BmrFI | CCNGG | 9 cut(s) | 121, 186, 423, 468, 544, 563, 733, 1769, 1894 |
| BmsI | GCATC | 6 cut(s) | 28, 398, 577, 739, 1510, 1658 |
| BoxI | GACNNNNGTC | 1 cut(s) | 237 |
| BpiI | GAAGAC | 2 cut(s) | 280, 420 |
| BpmI | CTGGAG | 4 cut(s) | 103, 947, 1383, 2040 |
| Bpu10I | CCTNAGC | 1 cut(s) | 848 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 933 |
| BpuEI | CTTGAG | 2 cut(s) | 1807, 2024 |
| BsaAI | YACGTR | 1 cut(s) | 284 |
| BsaJI | CCNNGG | 6 cut(s) | 120, 143, 422, 561, 1087, 1892 |
| BsaWI | WCCGGW | 1 cut(s) | 136 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 126, 2018, 2057 |
| Bse118I | RCCGGY | 2 cut(s) | 1602, 1980 |
| Bse1I | ACTGG | 5 cut(s) | 930, 945, 987, 1698, 1783 |
| Bse3DI | GCAATG | 1 cut(s) | 1975 |
| BseBI | CCWGG | 9 cut(s) | 121, 186, 423, 468, 544, 563, 733, 1769, 1894 |
| BseDI | CCNNGG | 6 cut(s) | 120, 143, 422, 561, 1087, 1892 |
| BseGI | GGATG | 6 cut(s) | 43, 257, 754, 1253, 1735, 1777 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 126, 2018, 2057 |
| BseMI | GCAATG | 1 cut(s) | 1975 |
| BseMII | CTCAG | 4 cut(s) | 815, 924, 1085, 1875 |
| BseNI | ACTGG | 5 cut(s) | 930, 945, 987, 1698, 1783 |
| BseRI | GAGGAG | 1 cut(s) | 68 |
| BseSI | GKGCMC | 2 cut(s) | 291, 1901 |
| BseXI | GCAGC | 5 cut(s) | 373, 784, 1279, 1968, 2011 |
| BseYI | CCCAGC | 2 cut(s) | 125, 656 |
| BsgI | GTGCAG | 3 cut(s) | 236, 1019, 1179 |
| Bsh1236I | CGCG | 1 cut(s) | 246 |
| BshFI | GGCC | 5 cut(s) | 23, 193, 669, 1472, 1594 |
| BshNI | GGYRCC | 1 cut(s) | 1896 |
| BsiHKAI | GWGCWC | 4 cut(s) | 291, 822, 1235, 2093 |
| BsiSI | CCGG | 4 cut(s) | 137, 1473, 1603, 1981 |
| BslFI | GGGAC | 4 cut(s) | 125, 225, 628, 2013 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 126, 2018, 2057 |
| BsmFI | GGGAC | 4 cut(s) | 125, 225, 628, 2013 |
| BsmI | GAATGC | 2 cut(s) | 1028, 1959 |
| BsnI | GGCC | 5 cut(s) | 23, 193, 669, 1472, 1594 |
| Bsp1286I | GDGCHC | 5 cut(s) | 291, 822, 1235, 1901, 2093 |
| Bsp1407I | TGTACA | 1 cut(s) | 695 |
| Bsp143I | GATC | 5 cut(s) | 169, 874, 1060, 1390, 1715 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 933 |
| Bsp19I | CCATGG | 1 cut(s) | 1087 |
| BspACI | CCGC | 5 cut(s) | 244, 1198, 1734, 1805, 1847 |
| BspANI | GGCC | 5 cut(s) | 23, 193, 669, 1472, 1594 |
| BspCNI | CTCAG | 4 cut(s) | 814, 925, 1084, 1876 |
| BspFNI | CGCG | 1 cut(s) | 246 |
| BspHI | TCATGA | 1 cut(s) | 1006 |
| BspLI | GGNNCC | 6 cut(s) | 141, 1062, 1423, 1620, 1898, 2010 |
| BspMI | ACCTGC | 1 cut(s) | 1168 |
| BspPI | GGATC | 3 cut(s) | 882, 1055, 1068 |
| BspT107I | GGYRCC | 1 cut(s) | 1896 |
| BspTI | CTTAAG | 1 cut(s) | 17 |
| BsrDI | GCAATG | 1 cut(s) | 1975 |
| BsrFI | RCCGGY | 2 cut(s) | 1602, 1980 |
| BsrGI | TGTACA | 1 cut(s) | 695 |
| BsrI | ACTGG | 5 cut(s) | 930, 945, 987, 1698, 1783 |
| BssAI | RCCGGY | 2 cut(s) | 1602, 1980 |
| BssECI | CCNNGG | 6 cut(s) | 120, 143, 422, 561, 1087, 1892 |
| BssMI | GATC | 5 cut(s) | 169, 874, 1060, 1390, 1715 |
| BssT1I | CCWWGG | 1 cut(s) | 1087 |
| Bst2UI | CCWGG | 9 cut(s) | 121, 186, 423, 468, 544, 563, 733, 1769, 1894 |
| Bst4CI | ACNGT | 3 cut(s) | 1579, 1685, 2095 |
| Bst6I | CTCTTC | 1 cut(s) | 366 |
| BstAFI | CTTAAG | 1 cut(s) | 17 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1166 |
| BstAUI | TGTACA | 1 cut(s) | 695 |
| BstBAI | YACGTR | 1 cut(s) | 284 |
| BstC8I | GCNNGC | 5 cut(s) | 738, 813, 1002, 1158, 1604 |
| BstDEI | CTNAG | 7 cut(s) | 166, 685, 801, 848, 933, 1071, 1884 |
| BstDSI | CCRYGG | 2 cut(s) | 143, 1087 |
| BstEII | GGTNACC | 1 cut(s) | 1271 |
| BstF5I | GGATG | 6 cut(s) | 43, 257, 754, 1253, 1735, 1777 |
| BstFNI | CGCG | 1 cut(s) | 246 |
| BstKTI | GATC | 5 cut(s) | 172, 877, 1063, 1393, 1718 |
| BstMBI | GATC | 5 cut(s) | 169, 874, 1060, 1390, 1715 |
| BstNI | CCWGG | 9 cut(s) | 121, 186, 423, 468, 544, 563, 733, 1769, 1894 |
| BstNSI | RCATGY | 1 cut(s) | 740 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 237 |
| BstPI | GGTNACC | 1 cut(s) | 1271 |
| BstSCI | CCNGG | 9 cut(s) | 119, 184, 421, 466, 542, 561, 731, 1767, 1892 |
| BstSFI | CTRYAG | 1 cut(s) | 268 |
| BstSLI | GKGCMC | 2 cut(s) | 291, 1901 |
| BstUI | CGCG | 1 cut(s) | 246 |
| BstV1I | GCAGC | 5 cut(s) | 373, 784, 1279, 1968, 2011 |
| BstV2I | GAAGAC | 2 cut(s) | 280, 420 |
| BstX2I | RGATCY | 1 cut(s) | 1060 |
| BstYI | RGATCY | 1 cut(s) | 1060 |
| BsuRI | GGCC | 5 cut(s) | 23, 193, 669, 1472, 1594 |
| BtgI | CCRYGG | 2 cut(s) | 143, 1087 |
| BtgZI | GCGATG | 1 cut(s) | 278 |
| BtrI | CACGTC | 1 cut(s) | 1663 |
| BtsCI | GGATG | 6 cut(s) | 43, 257, 754, 1253, 1735, 1777 |
| BtsIMutI | CAGTG | 4 cut(s) | 923, 938, 1584, 1705 |
| BveI | ACCTGC | 1 cut(s) | 1168 |
| Cac8I | GCNNGC | 5 cut(s) | 738, 813, 1002, 1158, 1604 |
| CciI | TCATGA | 1 cut(s) | 1006 |
| Cfr10I | RCCGGY | 2 cut(s) | 1602, 1980 |
| Cfr13I | GGNCC | 4 cut(s) | 139, 192, 1112, 1619 |
| Csp6I | GTAC | 4 cut(s) | 696, 1367, 1553, 2038 |
| CviQI | GTAC | 4 cut(s) | 696, 1367, 1553, 2038 |
| DdeI | CTNAG | 7 cut(s) | 166, 685, 801, 848, 933, 1071, 1884 |
| DpnI | GATC | 5 cut(s) | 171, 876, 1062, 1392, 1717 |
| DpnII | GATC | 5 cut(s) | 169, 874, 1060, 1390, 1715 |
| DraI | TTTAAA | 1 cut(s) | 1951 |
| EaeI | YGGCCR | 1 cut(s) | 1470 |
| Eam1104I | CTCTTC | 1 cut(s) | 366 |
| EarI | CTCTTC | 1 cut(s) | 366 |
| Ecl136II | GAGCTC | 2 cut(s) | 820, 1233 |
| Eco130I | CCWWGG | 1 cut(s) | 1087 |
| Eco147I | AGGCCT | 2 cut(s) | 23, 1594 |
| Eco24I | GRGCYC | 2 cut(s) | 822, 1235 |
| Eco47I | GGWCC | 3 cut(s) | 139, 1112, 1619 |
| Eco53kI | GAGCTC | 2 cut(s) | 820, 1233 |
| Eco57I | CTGAAG | 2 cut(s) | 774, 945 |
| Eco91I | GGTNACC | 1 cut(s) | 1271 |
| EcoICRI | GAGCTC | 2 cut(s) | 820, 1233 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1619 |
| EcoO65I | GGTNACC | 1 cut(s) | 1271 |
| EcoRII | CCWGG | 9 cut(s) | 119, 184, 421, 466, 542, 561, 731, 1767, 1892 |
| EcoT14I | CCWWGG | 1 cut(s) | 1087 |
| EcoT38I | GRGCYC | 2 cut(s) | 822, 1235 |
| ErhI | CCWWGG | 1 cut(s) | 1087 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 590, 622, 1279, 1311, 1803, 1835 |
| FaqI | GGGAC | 4 cut(s) | 125, 225, 628, 2013 |
| FauI | CCCGC | 2 cut(s) | 251, 1191 |
| Fnu4HI | GCNGC | 7 cut(s) | 387, 798, 1293, 1806, 1848, 1957, 2025 |
| FokI | GGATG | 6 cut(s) | 50, 244, 761, 1240, 1742, 1784 |
| FriOI | GRGCYC | 2 cut(s) | 822, 1235 |
| Fsp4HI | GCNGC | 7 cut(s) | 387, 798, 1293, 1806, 1848, 1957, 2025 |
| FspBI | CTAG | 7 cut(s) | 341, 534, 779, 954, 1299, 1932, 2101 |
| GluI | GCNGC | 7 cut(s) | 387, 798, 1293, 1806, 1848, 1957, 2025 |
| GsaI | CCCAGC | 2 cut(s) | 129, 660 |
| GsuI | CTGGAG | 4 cut(s) | 103, 947, 1383, 2040 |
| HaeIII | GGCC | 5 cut(s) | 23, 193, 669, 1472, 1594 |
| HapII | CCGG | 4 cut(s) | 137, 1473, 1603, 1981 |
| HincII | GTYRAC | 1 cut(s) | 1575 |
| HindII | GTYRAC | 1 cut(s) | 1575 |
| HindIII | AAGCTT | 8 cut(s) | 305, 700, 756, 845, 1247, 1351, 1583, 1783 |
| HpaII | CCGG | 4 cut(s) | 137, 1473, 1603, 1981 |
| HphI | GGTGA | 3 cut(s) | 736, 1117, 1757 |
| Hpy166II | GTNNAC | 2 cut(s) | 289, 1575 |
| Hpy188III | TCNNGA | 6 cut(s) | 35, 397, 1007, 1022, 1064, 1526 |
| Hpy8I | GTNNAC | 2 cut(s) | 289, 1575 |
| HpyAV | CCTTC | 9 cut(s) | 114, 493, 549, 655, 801, 969, 1366, 1704, 1828 |
| HpyCH4III | ACNGT | 3 cut(s) | 1579, 1685, 2095 |
| HpyCH4IV | ACGT | 3 cut(s) | 283, 602, 1662 |
| HpyF3I | CTNAG | 7 cut(s) | 166, 685, 801, 848, 933, 1071, 1884 |
| HpySE526I | ACGT | 3 cut(s) | 283, 602, 1662 |
| KroI | GCCGGC | 1 cut(s) | 1602 |
| KroNI | GCCGGC | 1 cut(s) | 1604 |
| Kzo9I | GATC | 5 cut(s) | 169, 874, 1060, 1390, 1715 |
| LmnI | GCTCC | 3 cut(s) | 334, 1498, 2021 |
| Lsp1109I | GCAGC | 5 cut(s) | 373, 784, 1279, 1968, 2011 |
| LweI | GCATC | 6 cut(s) | 28, 398, 577, 739, 1510, 1658 |
| MaeI | CTAG | 7 cut(s) | 341, 534, 779, 954, 1299, 1932, 2101 |
| MaeII | ACGT | 3 cut(s) | 283, 602, 1662 |
| MaeIII | GTNAC | 5 cut(s) | 230, 403, 765, 1271, 2095 |
| MalI | GATC | 5 cut(s) | 171, 876, 1062, 1392, 1717 |
| MboI | GATC | 5 cut(s) | 169, 874, 1060, 1390, 1715 |
| MfeI | CAATTG | 1 cut(s) | 6 |
| MflI | RGATCY | 1 cut(s) | 1060 |
| MhlI | GDGCHC | 5 cut(s) | 291, 822, 1235, 1901, 2093 |
| MlyI | GAGTC | 2 cut(s) | 1327, 1874 |
| MmeI | TCCRAC | 2 cut(s) | 1057, 2036 |
| MroNI | GCCGGC | 1 cut(s) | 1602 |
| MroXI | GAANNNNTTC | 3 cut(s) | 64, 1447, 1866 |
| MseI | TTAA | 6 cut(s) | 18, 210, 891, 903, 1398, 1950 |
| MslI | CAYNNNNRTG | 6 cut(s) | 212, 282, 284, 626, 1770, 1828 |
| MspA1I | CMGCKG | 1 cut(s) | 1198 |
| MspCI | CTTAAG | 1 cut(s) | 17 |
| MspI | CCGG | 4 cut(s) | 137, 1473, 1603, 1981 |
| MspR9I | CCNGG | 9 cut(s) | 121, 186, 423, 468, 544, 563, 733, 1769, 1894 |
| MssI | GTTTAAAC | 1 cut(s) | 1951 |
| MunI | CAATTG | 1 cut(s) | 6 |
| Mva1269I | GAATGC | 2 cut(s) | 1028, 1959 |
| MvaI | CCWGG | 9 cut(s) | 121, 186, 423, 468, 544, 563, 733, 1769, 1894 |
| MvnI | CGCG | 1 cut(s) | 246 |
| NaeI | GCCGGC | 1 cut(s) | 1604 |
| NcoI | CCATGG | 1 cut(s) | 1087 |
| NdeII | GATC | 5 cut(s) | 169, 874, 1060, 1390, 1715 |
| NgoMIV | GCCGGC | 1 cut(s) | 1602 |
| NlaIV | GGNNCC | 6 cut(s) | 141, 1062, 1423, 1620, 1898, 2010 |
| NmuCI | GTSAC | 1 cut(s) | 230 |
| NspI | RCATGY | 1 cut(s) | 740 |
| OliI | CACNNNNGTG | 2 cut(s) | 282, 1828 |
| PaeI | GCATGC | 1 cut(s) | 740 |
| PagI | TCATGA | 1 cut(s) | 1006 |
| PaqCI | CACCTGC | 1 cut(s) | 1168 |
| PceI | AGGCCT | 2 cut(s) | 23, 1594 |
| PctI | GAATGC | 2 cut(s) | 1028, 1959 |
| PdiI | GCCGGC | 1 cut(s) | 1604 |
| PdmI | GAANNNNTTC | 3 cut(s) | 64, 1447, 1866 |
| PfeI | GAWTC | 9 cut(s) | 65, 148, 317, 674, 974, 1067, 1100, 1283, 1928 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2018 |
| PkrI | GCNGC | 7 cut(s) | 388, 799, 1294, 1807, 1849, 1958, 2026 |
| PleI | GAGTC | 2 cut(s) | 1326, 1874 |
| PmeI | GTTTAAAC | 1 cut(s) | 1951 |
| PpsI | GAGTC | 2 cut(s) | 1326, 1874 |
| Ppu21I | YACGTR | 1 cut(s) | 284 |
| PpuMI | RGGWCCY | 1 cut(s) | 1619 |
| PshAI | GACNNNNGTC | 1 cut(s) | 237 |
| Psp124BI | GAGCTC | 2 cut(s) | 822, 1235 |
| Psp5II | RGGWCCY | 1 cut(s) | 1619 |
| Psp6I | CCWGG | 9 cut(s) | 119, 184, 421, 466, 542, 561, 731, 1767, 1892 |
| PspEI | GGTNACC | 1 cut(s) | 1271 |
| PspFI | CCCAGC | 2 cut(s) | 125, 656 |
| PspGI | CCWGG | 9 cut(s) | 119, 184, 421, 466, 542, 561, 731, 1767, 1892 |
| PspN4I | GGNNCC | 6 cut(s) | 141, 1062, 1423, 1620, 1898, 2010 |
| PspPI | GGNCC | 4 cut(s) | 139, 192, 1112, 1619 |
| PspPPI | RGGWCCY | 1 cut(s) | 1619 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1851, 1883 |
| PsuI | RGATCY | 1 cut(s) | 1060 |
| RsaI | GTAC | 4 cut(s) | 697, 1368, 1554, 2039 |
| RsaNI | GTAC | 4 cut(s) | 696, 1367, 1553, 2038 |
| RseI | CAYNNNNRTG | 6 cut(s) | 212, 282, 284, 626, 1770, 1828 |
| SacI | GAGCTC | 2 cut(s) | 822, 1235 |
| SaqAI | TTAA | 6 cut(s) | 18, 210, 891, 903, 1398, 1950 |
| SatI | GCNGC | 7 cut(s) | 387, 798, 1293, 1806, 1848, 1957, 2025 |
| Sau3AI | GATC | 5 cut(s) | 169, 874, 1060, 1390, 1715 |
| Sau96I | GGNCC | 4 cut(s) | 139, 192, 1112, 1619 |
| SchI | GAGTC | 2 cut(s) | 1327, 1874 |
| ScrFI | CCNGG | 9 cut(s) | 121, 186, 423, 468, 544, 563, 733, 1769, 1894 |
| SduI | GDGCHC | 5 cut(s) | 291, 822, 1235, 1901, 2093 |
| SfaNI | GCATC | 6 cut(s) | 28, 398, 577, 739, 1510, 1658 |
| SfcI | CTRYAG | 1 cut(s) | 268 |
| SinI | GGWCC | 3 cut(s) | 139, 1112, 1619 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 212, 282, 284, 626, 1770, 1828 |
| SmlI | CTYRAG | 3 cut(s) | 17, 1786, 2003 |
| SmoI | CTYRAG | 3 cut(s) | 17, 1786, 2003 |
| SphI | GCATGC | 1 cut(s) | 740 |
| SseBI | AGGCCT | 2 cut(s) | 23, 1594 |
| SsiI | CCGC | 5 cut(s) | 244, 1198, 1734, 1805, 1847 |
| SspMI | CTAG | 7 cut(s) | 341, 534, 779, 954, 1299, 1932, 2101 |
| SstI | GAGCTC | 2 cut(s) | 822, 1235 |
| StuI | AGGCCT | 2 cut(s) | 23, 1594 |
| StyD4I | CCNGG | 9 cut(s) | 119, 184, 421, 466, 542, 561, 731, 1767, 1892 |
| StyI | CCWWGG | 1 cut(s) | 1087 |
| TaaI | ACNGT | 3 cut(s) | 1579, 1685, 2095 |
| TaiI | ACGT | 3 cut(s) | 286, 605, 1665 |
| TaqI | TCGA | 2 cut(s) | 1244, 1321 |
| TaqII | GACCGA | 2 cut(s) | 1420, 1560 |
| TatI | WGTACW | 3 cut(s) | 695, 1366, 2037 |
| TauI | GCSGC | 2 cut(s) | 1808, 1850 |
| TfiI | GAWTC | 9 cut(s) | 65, 148, 317, 674, 974, 1067, 1100, 1283, 1928 |
| Tru1I | TTAA | 6 cut(s) | 18, 210, 891, 903, 1398, 1950 |
| Tru9I | TTAA | 6 cut(s) | 18, 210, 891, 903, 1398, 1950 |
| TscAI | CASTG | 4 cut(s) | 930, 945, 1584, 1705 |
| TseFI | GTSAC | 1 cut(s) | 230 |
| TseI | GCWGC | 5 cut(s) | 386, 797, 1292, 1956, 2024 |
| Tsp45I | GTSAC | 1 cut(s) | 230 |
| TspDTI | ATGAA | 8 cut(s) | 59, 149, 246, 1065, 1208, 1242, 1788, 1929 |
| TspRI | CASTG | 4 cut(s) | 930, 945, 1584, 1705 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2018 |
| Vha464I | CTTAAG | 1 cut(s) | 17 |
| VneI | GTGCAC | 1 cut(s) | 287 |
| VpaK11BI | GGWCC | 3 cut(s) | 139, 1112, 1619 |
| XapI | RAATTY | 2 cut(s) | 1079, 1506 |
| XceI | RCATGY | 1 cut(s) | 740 |
| XmnI | GAANNNNTTC | 3 cut(s) | 64, 1447, 1866 |
| XspI | CTAG | 7 cut(s) | 341, 534, 779, 954, 1299, 1932, 2101 |