Rh1BG382300

zinc finger

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
51092210 .. 51097135
4926 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG382300.1

Sequence Viewer

Length: 1971 bp
ATGTTACTTACTGAAAGTCTAATAAGCAGGTATTTTAGTTGTAATTTTTTGTTTAAAGACGAAGCTATTTTACTTTTGACAGAGCTTCCAGGTTGGCCCCTGCACTCTCCCATCAAGGTGCAAATGCAAAAGTGTGACAAATGCCCCCGAGAATTTTGTTCACCCATCAACCACAGAAGGCACATTCGCGTGCACCATCGACTGAAAAAGCTTGATAAGGATTCTACCAGAAATAGGGATCTTCTTGGGGCATTTTGGGATAAGCTCTCCACGGAAGAGGCAAAAGAATCTGTATCGTTCAAGAATGTGAATTTGGAGGAAATTGCGGGGTCTTCAATCATAAAGGCTTTGACAACACTTATTCGGAAACCTGGATTCACTTCTCTGCCCCACATTTATTTGAAGGCTGGTTCTGCCCTTCTGGATATTGTCCAGGCTAGACCTTCCAGGTTTCCAATATCTTCGCAGGAGTTATTCAGTTTACTTGACGATGCAAGTGAAAAAACATTCCTATCTGGTACAGCCACATCAATGCAAAGATATATTTTTGACGGGGATGCTGGGAAGGTTGGCCTTGAAACAAAGAATCTAGTTGCTTGTACCAGCTTCTTGGTAGAACAAAAATTGGTTAAAGCTTGGCATGCTTACAAGGATGCCGAAGCTTTGCGGTTACAAAAGCTACTAGTGGAAGAAGAAGAAGCAGCTCAAAAAAGGCAAGCTGATCTCTTGGAAAGAAAGAGGCAGAAGAAGCTTAGGCAGAAAGAACAAAAGGCAAAGGACCAAGAGAAGGTGAACGGTAAAGACGGCATTGATGAACCTCTGGAAGAAACATTGAGTCATTCAACAACCATTGATTCTGACTCACCCATTTCAGACGTTCTAGATCATGCTCACTCATCTGTTGAAGCATTTCAAGACTCAAGCACCAATGAAAATGTGGATCCCGAATCTCAGACTGGAATTGGCTATGGACAAGCTGATCCTGCGAATGATTCAAATGTGGAACGGCGGACAGTGCAAGGAAATGGTTCTCGGCGTGCGGTTGCTCGATGGCAGGTGTTGCCGAAACCACAGCGGGGTGTGCCTAATGGATTTCATGCAGGTCAGAGTTCTCAAACATCAAAGCTTCCATCCATGCAAAATCATGGAAGCTACCGGGATTCAAGAGCTGTGTCCGGCAGCAATAAAGTTTGGAGTCGAAAGCCTAAACCACAAAATGATGGGGGGAGTTTGAAAGATGGAGTACAAAAGGATGCAACTGAACCTGATCAAATCAAGAACCATGAGGTCTTGATTGGATCTATATCAGTCACACTTGGAAATTCTTCCCAAGAAAGTAATAATCTGGCTGGCTTTCGTGATGATGGCCTTTTGGAGCAACAAATGCCTAAGAACAACTTTCAGGACAAAACCAATAAACCTGATTCTGTTCAGAGTAGCTCAAACCGATCAACAGTAAAACTTTGGAGGCCAGTGAGCCGGAATGGAACAAAGGGGTCTCCTATGCCAGTTGAGAATGGCTGCGGAGAATCTGAAACTGATGTTGCAGCTGAGAAGGGCAACAGTCGGACCATTTCCAATGGAAATTGTCCAAGATCATGTATCGTGGATAGTCATAATGATGGCATTGGTAATGGATCTACACAAGCCGGAAACTTGGGTTTCTCCAGTCGTGCTGCAAAAGATTTTCTTGCACAGAGATGGGAAGAGGCTATAGCCGGAGACCATGTAGAATTGGTTCTTTTCCAAGGTTCTGAACCTCCCAGATGCCCGGACAGTGACAATGAAGTAGCAGCAACTCATTCATTGAGGTTTAGACGCAGCATTCTTGGGAATGCAGAAAACCGGCTGGTTAATGTGGAGGCACTCGAGTCTCCAATTGCCGGAGCTGGTAAAGTCAAGTATAGGTCGAAGAAGCCTGAAAAGGGTGTGAAGATAAAATACATCCCCAAACAGAATACCGTTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

656

Amino Acids

72.5

Weight (kDa)

8.71

Isoelectric Point (pI)

46.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1045
Acc36I ACCTGC 3 cut(s) 18, 1045, 1091
AccII CGCG 1 cut(s) 189
AciI CCGC 6 cut(s) 326, 667, 1009, 1040, 1075, 1524
AclWI GGATC 6 cut(s) 246, 935, 948, 974, 1306, 1645
AcsI RAATTY 3 cut(s) 152, 310, 1321
AfaI GTAC 3 cut(s) 520, 601, 1245
AfiI CCNNNNNNNGG 5 cut(s) 234, 787, 1076, 1883, 1925
AhlI ACTAGT 1 cut(s) 682
AjnI CCWGG 4 cut(s) 88, 370, 432, 446
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
Alw21I GWGCWC 1 cut(s) 195
Alw26I GTCTC 3 cut(s) 1503, 1716, 1878
Alw44I GTGCAC 1 cut(s) 191
AlwI GGATC 6 cut(s) 246, 935, 948, 974, 1306, 1645
Ama87I CYCGRG 2 cut(s) 147, 1868
AoxI GGCC 4 cut(s) 95, 571, 1366, 1469
ApaLI GTGCAC 1 cut(s) 191
ApeKI GCWGC 7 cut(s) 701, 1179, 1521, 1547, 1676, 1793, 1821
ApoI RAATTY 3 cut(s) 152, 310, 1321
Asp700I GAANNNNTTC 4 cut(s) 909, 1027, 1324, 1737
AspS9I GGNCC 3 cut(s) 96, 778, 1569
AsuC2I CCSGG 2 cut(s) 1157, 1772
AsuHPI GGTGA 3 cut(s) 153, 802, 855
AvaI CYCGRG 2 cut(s) 147, 1868
AvaII GGWCC 2 cut(s) 778, 1569
BaeGI GKGCMC 1 cut(s) 195
BamHI GGATCC 1 cut(s) 940
BarI GAAGNNNNNNTAC 4 cut(s) 54, 86, 1925, 1957
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 7 cut(s) 713, 1191, 1508, 1559, 1663, 1805, 1833
BceAI ACGGC 2 cut(s) 820, 1022
BciT130I CCWGG 4 cut(s) 90, 372, 434, 448
BclI TGATCA 1 cut(s) 1267
BcnI CCSGG 2 cut(s) 1157, 1772
BcoDI GTCTC 3 cut(s) 1503, 1716, 1878
BcuI ACTAGT 1 cut(s) 682
BfaI CTAG 5 cut(s) 438, 590, 683, 881, 1969
BfmI CTRYAG 1 cut(s) 1713
BfuAI ACCTGC 3 cut(s) 18, 1045, 1091
BisI GCNGC 7 cut(s) 702, 1180, 1522, 1548, 1677, 1794, 1822
BlsI GCNGC 7 cut(s) 703, 1181, 1523, 1549, 1678, 1795, 1823
Bme1390I CCNGG 6 cut(s) 90, 372, 434, 448, 1157, 1772
Bme18I GGWCC 2 cut(s) 778, 1569
BmeT110I CYCGRG 2 cut(s) 147, 1868
BmgT120I GGNCC 3 cut(s) 96, 778, 1569
BmiI GGNNCC 2 cut(s) 98, 942
BmrFI CCNGG 6 cut(s) 90, 372, 434, 448, 1157, 1772
BmsI GCATC 5 cut(s) 481, 547, 643, 1243, 1757
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 1651
Bpu10I CCTNAGC 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 904
BpuMI CCSGG 2 cut(s) 1157, 1772
BsaBI GATNNNNATC 1 cut(s) 1303
BsaI GGTCTC 2 cut(s) 1503, 1716
BsaJI CCNNGG 2 cut(s) 270, 1747
BsaXI ACNNNNNCTCC 2 cut(s) 1713, 1743
Bsc4I CCNNNNNNNGG 5 cut(s) 234, 787, 1076, 1883, 1925
Bse118I RCCGGY 1 cut(s) 1845
Bse1I ACTGG 4 cut(s) 961, 1472, 1508, 1668
Bse8I GATNNNNATC 1 cut(s) 1303
BseBI CCWGG 4 cut(s) 90, 372, 434, 448
BseDI CCNNGG 2 cut(s) 270, 1747
BseGI GGATG 5 cut(s) 562, 658, 1130, 1258, 1944
BseJI GATNNNNATC 1 cut(s) 1303
BseLI CCNNNNNNNGG 5 cut(s) 234, 787, 1076, 1883, 1925
BseMII CTCAG 2 cut(s) 965, 1542
BseNI ACTGG 4 cut(s) 961, 1472, 1508, 1668
BseSI GKGCMC 1 cut(s) 195
BseXI GCAGC 7 cut(s) 713, 1191, 1508, 1559, 1663, 1805, 1833
BseYI CCCAGC 1 cut(s) 560
BsgI GTGCAG 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 4 cut(s) 97, 573, 1368, 1471
BsiHKAI GWGCWC 1 cut(s) 195
BsiHKCI CYCGRG 2 cut(s) 147, 1868
BsiSI CCGG 8 cut(s) 1156, 1176, 1480, 1650, 1719, 1772, 1846, 1884
BslI CCNNNNNNNGG 5 cut(s) 234, 787, 1076, 1883, 1925
BsmAI GTCTC 3 cut(s) 1503, 1716, 1878
BsmI GAATGC 2 cut(s) 1824, 1840
BsnI GGCC 4 cut(s) 97, 573, 1368, 1471
Bso31I GGTCTC 2 cut(s) 1503, 1716
BsoBI CYCGRG 2 cut(s) 147, 1868
Bsp1286I GDGCHC 1 cut(s) 195
BspACI CCGC 6 cut(s) 326, 667, 1009, 1040, 1075, 1524
BspANI GGCC 4 cut(s) 97, 573, 1368, 1471
BspCNI CTCAG 2 cut(s) 964, 1543
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 98, 942
BspMI ACCTGC 3 cut(s) 18, 1045, 1091
BspPI GGATC 6 cut(s) 246, 935, 948, 974, 1306, 1645
BspTNI GGTCTC 2 cut(s) 1503, 1716
BsrFI RCCGGY 1 cut(s) 1845
BsrI ACTGG 4 cut(s) 961, 1472, 1508, 1668
BssAI RCCGGY 1 cut(s) 1845
BssECI CCNNGG 2 cut(s) 270, 1747
BssT1I CCWWGG 1 cut(s) 1747
Bst2UI CCWGG 4 cut(s) 90, 372, 434, 448
Bst4CI ACNGT 6 cut(s) 797, 1015, 1456, 1565, 1778, 1963
Bst6I CTCTTC 2 cut(s) 270, 1701
BstAPI GCANNNNNTGC 2 cut(s) 1060, 1384
BstC8I GCNNGC 5 cut(s) 191, 642, 717, 1038, 1351
BstDEI CTNAG 4 cut(s) 752, 951, 1389, 1551
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 5 cut(s) 562, 658, 1130, 1258, 1944
BstFNI CGCG 1 cut(s) 189
BstMAI GTCTC 3 cut(s) 1503, 1716, 1878
BstMWI GCNNNNNNNGC 8 cut(s) 413, 641, 748, 983, 1015, 1060, 1081, 1384
BstNI CCWGG 4 cut(s) 90, 372, 434, 448
BstNSI RCATGY 1 cut(s) 644
BstSCI CCNGG 6 cut(s) 88, 370, 432, 446, 1155, 1770
BstSFI CTRYAG 1 cut(s) 1713
BstSLI GKGCMC 1 cut(s) 195
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 7 cut(s) 713, 1191, 1508, 1559, 1663, 1805, 1833
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 4 cut(s) 238, 940, 1298, 1637
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 4 cut(s) 238, 940, 1298, 1637
BsuRI GGCC 4 cut(s) 97, 573, 1368, 1471
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 5 cut(s) 562, 658, 1130, 1258, 1944
BtsIMutI CAGTG 3 cut(s) 1020, 1479, 1783
BveI ACCTGC 3 cut(s) 18, 1045, 1091
Cac8I GCNNGC 5 cut(s) 191, 642, 717, 1038, 1351
Cfr10I RCCGGY 1 cut(s) 1845
Cfr13I GGNCC 3 cut(s) 96, 778, 1569
CseI GACGC 1 cut(s) 1827
Csp6I GTAC 3 cut(s) 519, 600, 1244
CviAII CATG 8 cut(s) 641, 887, 1097, 1135, 1145, 1283, 1599, 1727
CviQI GTAC 3 cut(s) 519, 600, 1244
DdeI CTNAG 4 cut(s) 752, 951, 1389, 1551
DraI TTTAAA 1 cut(s) 55
Eam1104I CTCTTC 2 cut(s) 270, 1701
EarI CTCTTC 2 cut(s) 270, 1701
EciI GGCGGA 1 cut(s) 1024
Eco130I CCWWGG 1 cut(s) 1747
Eco31I GGTCTC 2 cut(s) 1503, 1716
Eco47I GGWCC 2 cut(s) 778, 1569
Eco88I CYCGRG 2 cut(s) 147, 1868
EcoRII CCWGG 4 cut(s) 88, 370, 432, 446
EcoT14I CCWWGG 1 cut(s) 1747
ErhI CCWWGG 1 cut(s) 1747
FaeI CATG 8 cut(s) 644, 890, 1100, 1138, 1148, 1286, 1602, 1730
FalI AAGNNNNNCTT 4 cut(s) 1382, 1414, 1674, 1706
FatI CATG 8 cut(s) 640, 886, 1096, 1134, 1144, 1282, 1598, 1726
FauI CCCGC 2 cut(s) 319, 1068
FbaI TGATCA 1 cut(s) 1267
Fnu4HI GCNGC 7 cut(s) 702, 1180, 1522, 1548, 1677, 1794, 1822
FokI GGATG 5 cut(s) 569, 665, 1117, 1265, 1931
Fsp4HI GCNGC 7 cut(s) 702, 1180, 1522, 1548, 1677, 1794, 1822
FspBI CTAG 5 cut(s) 438, 590, 683, 881, 1969
GluI GCNGC 7 cut(s) 702, 1180, 1522, 1548, 1677, 1794, 1822
GsaI CCCAGC 1 cut(s) 564
GsuI CTGGAG 1 cut(s) 1651
HaeIII GGCC 4 cut(s) 97, 573, 1368, 1471
HapII CCGG 8 cut(s) 1156, 1176, 1480, 1650, 1719, 1772, 1846, 1884
HgaI GACGC 1 cut(s) 1827
Hin1II CATG 8 cut(s) 644, 890, 1100, 1138, 1148, 1286, 1602, 1730
HindIII AAGCTT 5 cut(s) 209, 633, 660, 749, 1124
HpaII CCGG 8 cut(s) 1156, 1176, 1480, 1650, 1719, 1772, 1846, 1884
HphI GGTGA 3 cut(s) 153, 802, 855
Hpy166II GTNNAC 4 cut(s) 161, 193, 482, 793
Hpy188I TCNGA 9 cut(s) 366, 859, 874, 954, 1107, 1434, 1534, 1569, 1756
Hpy8I GTNNAC 4 cut(s) 161, 193, 482, 793
HpyAV CCTTC 7 cut(s) 171, 397, 428, 453, 559, 781, 1549
HpyCH4III ACNGT 6 cut(s) 797, 1015, 1456, 1565, 1778, 1963
HpyCH4IV ACGT 1 cut(s) 876
HpyF10VI GCNNNNNNNGC 8 cut(s) 413, 641, 748, 983, 1015, 1060, 1081, 1384
HpyF3I CTNAG 4 cut(s) 752, 951, 1389, 1551
HpySE526I ACGT 1 cut(s) 876
Hsp92II CATG 8 cut(s) 644, 890, 1100, 1138, 1148, 1286, 1602, 1730
Ksp22I TGATCA 1 cut(s) 1267
LmnI GCTCC 2 cut(s) 1375, 1886
Lsp1109I GCAGC 7 cut(s) 713, 1191, 1508, 1559, 1663, 1805, 1833
LweI GCATC 5 cut(s) 481, 547, 643, 1243, 1757
MaeI CTAG 5 cut(s) 438, 590, 683, 881, 1969
MaeII ACGT 1 cut(s) 876
MaeIII GTNAC 6 cut(s) 3, 134, 669, 1309, 1778, 1963
MfeI CAATTG 1 cut(s) 1878
MflI RGATCY 4 cut(s) 238, 940, 1298, 1637
MhlI GDGCHC 1 cut(s) 195
MlyI GAGTC 5 cut(s) 844, 854, 911, 1204, 1880
MmeI TCCRAC 1 cut(s) 1547
MroXI GAANNNNTTC 4 cut(s) 909, 1027, 1324, 1737
MseI TTAA 3 cut(s) 54, 630, 1854
MslI CAYNNNNRTG 5 cut(s) 116, 188, 530, 1620, 1699
MspA1I CMGCKG 2 cut(s) 1075, 1550
MspI CCGG 8 cut(s) 1156, 1176, 1480, 1650, 1719, 1772, 1846, 1884
MspR9I CCNGG 6 cut(s) 90, 372, 434, 448, 1157, 1772
MunI CAATTG 1 cut(s) 1878
Mva1269I GAATGC 2 cut(s) 1824, 1840
MvaI CCWGG 4 cut(s) 90, 372, 434, 448
MvnI CGCG 1 cut(s) 189
MwoI GCNNNNNNNGC 8 cut(s) 413, 641, 748, 983, 1015, 1060, 1081, 1384
NciI CCSGG 2 cut(s) 1157, 1772
NlaIII CATG 8 cut(s) 644, 890, 1100, 1138, 1148, 1286, 1602, 1730
NlaIV GGNNCC 2 cut(s) 98, 942
NmeAIII GCCGAG 1 cut(s) 1012
NmuCI GTSAC 3 cut(s) 134, 1309, 1778
NspI RCATGY 1 cut(s) 644
PaeI GCATGC 1 cut(s) 644
PaeR7I CTCGAG 1 cut(s) 1868
PaqCI CACCTGC 1 cut(s) 1045
PctI GAATGC 2 cut(s) 1824, 1840
PdmI GAANNNNTTC 4 cut(s) 909, 1027, 1324, 1737
PkrI GCNGC 7 cut(s) 703, 1181, 1523, 1549, 1678, 1795, 1823
PleI GAGTC 5 cut(s) 843, 854, 911, 1203, 1879
PpsI GAGTC 5 cut(s) 843, 854, 911, 1203, 1879
Psp6I CCWGG 4 cut(s) 88, 370, 432, 446
PspFI CCCAGC 1 cut(s) 560
PspGI CCWGG 4 cut(s) 88, 370, 432, 446
PspN4I GGNNCC 2 cut(s) 98, 942
PspPI GGNCC 3 cut(s) 96, 778, 1569
PspXI VCTCGAGB 1 cut(s) 1868
PsrI GAACNNNNNNTAC 2 cut(s) 1722, 1754
PsuI RGATCY 4 cut(s) 238, 940, 1298, 1637
PvuII CAGCTG 1 cut(s) 1550
RsaI GTAC 3 cut(s) 520, 601, 1245
RsaNI GTAC 3 cut(s) 519, 600, 1244
RseI CAYNNNNRTG 5 cut(s) 116, 188, 530, 1620, 1699
SaqAI TTAA 3 cut(s) 54, 630, 1854
SatI GCNGC 7 cut(s) 702, 1180, 1522, 1548, 1677, 1794, 1822
Sau96I GGNCC 3 cut(s) 96, 778, 1569
SchI GAGTC 5 cut(s) 844, 854, 911, 1204, 1880
ScrFI CCNGG 6 cut(s) 90, 372, 434, 448, 1157, 1772
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 5 cut(s) 481, 547, 643, 1243, 1757
SfcI CTRYAG 1 cut(s) 1713
Sfr274I CTCGAG 1 cut(s) 1868
SinI GGWCC 2 cut(s) 778, 1569
SlaI CTCGAG 1 cut(s) 1868
SmiMI CAYNNNNRTG 5 cut(s) 116, 188, 530, 1620, 1699
SmlI CTYRAG 2 cut(s) 919, 1868
SmoI CTYRAG 2 cut(s) 919, 1868
SpeI ACTAGT 1 cut(s) 682
SphI GCATGC 1 cut(s) 644
SsiI CCGC 6 cut(s) 326, 667, 1009, 1040, 1075, 1524
SspMI CTAG 5 cut(s) 438, 590, 683, 881, 1969
StyD4I CCNGG 6 cut(s) 88, 370, 432, 446, 1155, 1770
StyI CCWWGG 1 cut(s) 1747
TaaI ACNGT 6 cut(s) 797, 1015, 1456, 1565, 1778, 1963
TaiI ACGT 1 cut(s) 879
TaqI TCGA 5 cut(s) 199, 1048, 1198, 1869, 1910
TatI WGTACW 1 cut(s) 1243
Tru1I TTAA 3 cut(s) 54, 630, 1854
Tru9I TTAA 3 cut(s) 54, 630, 1854
TscAI CASTG 3 cut(s) 1020, 1479, 1783
TseFI GTSAC 3 cut(s) 134, 1309, 1778
TseI GCWGC 7 cut(s) 701, 1179, 1521, 1547, 1676, 1793, 1821
Tsp45I GTSAC 3 cut(s) 134, 1309, 1778
TspDTI ATGAA 5 cut(s) 828, 945, 1085, 1794, 1800
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 3 cut(s) 1020, 1479, 1783
VneI GTGCAC 1 cut(s) 191
VpaK11BI GGWCC 2 cut(s) 778, 1569
XapI RAATTY 3 cut(s) 152, 310, 1321
XbaI TCTAGA 1 cut(s) 880
XceI RCATGY 1 cut(s) 644
XcmI CCANNNNNNNNNTGG 1 cut(s) 934
XhoI CTCGAG 1 cut(s) 1868
XmnI GAANNNNTTC 4 cut(s) 909, 1027, 1324, 1737
XspI CTAG 5 cut(s) 438, 590, 683, 881, 1969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.