Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001529

Physical Location & Seq

Genomic Coordinates Forward (+)

51188038 .. 51216348

Gene Structure 28311 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0405300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1863 bp

ATGGAAGATTGCTCTTCTTCTGAAATATCAATCGATAAATGGTTGACAGCTGAGCATAGGGTCCAAGAGATCTTATGGGCTGTTCAACCGAATGTAGCCTCTGAGTGGAGGAGGAGGGAGCTAATCGATTTTGTTCAAAGGATAATCAAAGGTCATTTCAGAACTGAGGTGTTGTCCTTTGGTTCAGTTCCTTTAAAAACGTATCTCCCTGATGGAGATATTGATTTGACAGTACTCTGTCATCGGAAGCAGGAGGAAGACTTAGCTAGGGCTATCTGCAGTCGCCTTCAAGGTGAACCAAAGGAACCTGGGTTCTTGGTTGAAGATGTTAGATATGTTCATGCAAAGGTTAAGATCATAAAATGCACTGTGAATAATATAGCAGTTGATATTTCATTTAATCAGGTGGCTGGGCTGTGTACACTGTGCTTTCTGGAGCAGGTGGACCAGGTCGTTGGAAGAGACCACCTTTTTAAAAAGAGTATAATCTTGATCAAAACTTGGTGCTATTATGAGAGCCGAACCGTTGGTGCACCCCATGGCTTGATTTCAACATATGCAATAGAAACACTGGTCTTGTATATCATCAATCTCTTTCATTCATCACTCCGTGGACCTCTACAGGTTCTTCATAGATTTTTGGAATACTATAGCAAATTTGATTGGACAAATTATTGCATCAGTATAAATGGTCCAGTTTCCTTATCATCTGTTCTTAAAATCAGAGCGACACCAGAAAATGAGGGGGAGAATTTACTGCTCACCAAGGAATTTTTGAAGAAATGTAGAGTTACATTTTCAGATCCAAGAAGAATCAGCGAAGCTAGACTGCAGGAATTCCCAATCAAGTGCTTCAACGTAGTGGATCCTCTAAAAGACAACAACAATCTAGGCCGTAGTGTTACTTCAGGAAACTTCACTCGCATTAAATCTGCTTTTGCATTTGGAGAAAATGAGCTCAGGAGAATTCTAGCGCTACCGGGTGAAAGCATTGGCCAAGAACTTCAAAAAGATTTTTTTCGCGTCACTTTAAATAGGAATGGGAGGGGACAAAGACCAGATTTGCAAGCTCCTGTACCAGCATTTGGTAGTGGAAGATATGTACAATCTAACCTCACTGGGGACTTTGATTATTATTATGGGGGAATATTGTATGCGCAGTGGCTTCATGATGAAAGCTTACATCTTTCTTCACACCCAAGTCCTCCACCTTCTCAAGTCCAGAATAACACCACATGGAATGCCAGGACTTGGTCAGTGAATGTCTTTGATCAAATGTCAATGAATGCATATGCATTACCTTTCTATCATCATTGTGCTTCCCAGCAGACTGCTCATATAAGGACATTGCCAGGAACTGGCATGTACATACCTGATCCGAGTCCTCATTACAGACAGATGTATTCAAGGGCGAGGGGAAGGAACGAGTCTAAAAATCGTCGGGTGATGATGAAACCACCGCAAAAGGTTAACCAATCAGAAACAAGTACTGGTGTACATGTAAGCAGCATTGATCTTTCACTTGAGGAAGTTCCACATCTTCCAGGCATTCAACCGCCCCCACCTCCACAAGTCTCTCAATCTGGTAAGCCCTGGCCATGTCTTCAATCCCAGGTGCCCCCTCAGACCAATGAGGATCGTAAGCTTGGGGTTTTGGGGCCTGCATCATTGCCTTTGGGAATGCATTCACTTGAAGCAAAAGCAGATTCTTGTAGTTCATATGCTAGGGACCTTACACCGAAGGTCCCTGTAATGGGAATGCCAAGTCAACAAGTACGTTCAAGCATTGATGAGATCAATAAAGAGCCGTTCCAGTTGGACAATAAAGATTTTCCGCCTTCGGGTAGCAAAACAAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0019005 GO:0031461 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

620

Amino Acids

70.14

Weight (kDa)

8.43

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	21 - 139	1.1e-11	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	152 - 344	1.1e-84	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT2G45950 AT3G61415 AT3G61415
fragaria_vesca	FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g14420 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890 FvH4_7g29890
malus_domestica	MD01G1062100.v1.1 MD01G1062700.v1.1 MD01G1205300.v1.1 MD07G1273900.v1.1 MD07G1274100.v1.1
prunus_persica	Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G171100_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1 Prupe.2G297900_v2.0.a1
pyrus_communis	pycom01g09320 pycom01g21480
rosa_chinensis	RchiOBHm_Chr1g0355761 RchiOBHm_Chr1g0377851
rosa_laevigata	RLG00000026492 RLG00000028129
rosa_multiflora	Rmu_sc0004824.1_g000008
rosa_roxburghii	Rroxscaffold_4G00281000 Rroxscaffold_4G00300000
rosa_rugosa	Rorug01G0248000 Rorug01G0405300 Rorug01G0405300
rosa_samantha	Rh1AG261000 Rh1AG426700 Rh1BG229400 Rh1BG382600 Rh1CG243600 Rh1CG396500 Rh1DG257400 Rh1DG413600
rosa_wichuraiana	Rw1G023000 Rw1G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	430
Acc16I	TGCGCA	1 cut(s)	1158
Acc36I	ACCTGC	1 cut(s)	430
AccB1I	GGYRCC	1 cut(s)	1615
AccB7I	CCANNNNNTGG	3 cut(s)	1085, 1251, 1358
AccII	CGCG	1 cut(s)	1023
AciI	CCGC	3 cut(s)	1460, 1556, 1835
AclWI	GGATC	5 cut(s)	797, 860, 873, 1370, 1644
AcoI	YGGCCR	2 cut(s)	994, 1595
AcsI	RAATTY	5 cut(s)	656, 751, 770, 836, 966
AcuI	CTGAAG	1 cut(s)	891
AdeI	CACNNNGTG	1 cut(s)	611
AfaI	GTAC	8 cut(s)	234, 421, 1077, 1104, 1367, 1489, 1497, 1776
AfeI	AGCGCT	1 cut(s)	975
AfiI	CCNNNNNNNGG	8 cut(s)	105, 1085, 1120, 1251, 1358, 1753, 1754, 1841
AflIII	ACRYGT	1 cut(s)	1498
AjnI	CCWGG	7 cut(s)	307, 447, 1244, 1351, 1543, 1592, 1611
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	8 cut(s)	50, 121, 266, 824, 958, 1070, 1179, 1645
AluI	AGCT	8 cut(s)	50, 121, 266, 824, 958, 1070, 1179, 1645
Alw21I	GWGCWC	2 cut(s)	535, 960
Alw26I	GTCTC	2 cut(s)	456, 1579
Alw44I	GTGCAC	1 cut(s)	531
AlwI	GGATC	5 cut(s)	797, 860, 873, 1370, 1644
AlwNI	CAGNNNCTG	1 cut(s)	1358
Aor51HI	AGCGCT	1 cut(s)	975
AoxI	GGCC	4 cut(s)	892, 994, 1595, 1658
ApaLI	GTGCAC	1 cut(s)	531
ApeKI	GCWGC	1 cut(s)	1506
ApoI	RAATTY	5 cut(s)	656, 751, 770, 836, 966
Asp700I	GAANNNNTTC	1 cut(s)	1684
AspLEI	GCGC	2 cut(s)	976, 1159
AspS9I	GGNCC	7 cut(s)	61, 445, 614, 692, 1658, 1729, 1744
AsuC2I	CCSGG	1 cut(s)	981
AsuHPI	GGTGA	4 cut(s)	305, 754, 995, 1456
AvaII	GGWCC	6 cut(s)	61, 445, 614, 692, 1729, 1744
BaeGI	GKGCMC	2 cut(s)	535, 1620
BalI	TGGCCA	2 cut(s)	996, 1597
BamHI	GGATCC	1 cut(s)	865
BanI	GGYRCC	1 cut(s)	1615
BanII	GRGCYC	1 cut(s)	960
BarI	GAAGNNNNNNTAC	2 cut(s)	889, 921
BbsI	GAAGAC	2 cut(s)	264, 1595
Bbv12I	GWGCWC	2 cut(s)	535, 960
BbvI	GCAGC	1 cut(s)	1518
BccI	CCATC	1 cut(s)	206
BceAI	ACGGC	2 cut(s)	879, 1792
BciT130I	CCWGG	7 cut(s)	309, 449, 1246, 1353, 1545, 1594, 1613
BclI	TGATCA	2 cut(s)	492, 1270
BcnI	CCSGG	1 cut(s)	981
BcoDI	GTCTC	2 cut(s)	456, 1579
BfaI	CTAG	5 cut(s)	267, 825, 890, 971, 1725
BfmI	CTRYAG	4 cut(s)	277, 620, 649, 830
BfoI	RGCGCY	1 cut(s)	977
BfuAI	ACCTGC	1 cut(s)	430
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	1 cut(s)	1507
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	1508
BmcAI	AGTACT	2 cut(s)	234, 1489
Bme1390I	CCNGG	8 cut(s)	309, 449, 981, 1246, 1353, 1545, 1594, 1613
Bme18I	GGWCC	6 cut(s)	61, 445, 614, 692, 1729, 1744
BmgT120I	GGNCC	7 cut(s)	61, 445, 614, 692, 1658, 1729, 1744
BmiI	GGNNCC	7 cut(s)	62, 306, 867, 1617, 1659, 1730, 1746
BmrFI	CCNGG	8 cut(s)	309, 449, 981, 1246, 1353, 1545, 1594, 1613
BmrI	ACTGGG	1 cut(s)	1128
BmsI	GCATC	2 cut(s)	687, 1673
BmuI	ACTGGG	1 cut(s)	1128
BpiI	GAAGAC	2 cut(s)	264, 1595
BpmI	CTGGAG	1 cut(s)	455
Bpu10I	CCTNAGC	1 cut(s)	959
Bpu1102I	GCTNAGC	1 cut(s)	51
BpuEI	CTTGAG	2 cut(s)	1200, 1544
BpuMI	CCSGG	1 cut(s)	981
Bsa29I	ATCGAT	2 cut(s)	33, 126
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	6 cut(s)	308, 538, 610, 765, 1592, 1611
Bsc4I	CCNNNNNNNGG	8 cut(s)	105, 1085, 1120, 1251, 1358, 1753, 1754, 1841
Bse1I	ACTGG	6 cut(s)	576, 695, 1123, 1363, 1495, 1813
Bse3DI	GCAATG	2 cut(s)	1346, 1667
BseBI	CCWGG	7 cut(s)	309, 449, 1246, 1353, 1545, 1594, 1613
BseCI	ATCGAT	2 cut(s)	33, 126
BseDI	CCNNGG	6 cut(s)	308, 538, 610, 765, 1592, 1611
BseLI	CCNNNNNNNGG	8 cut(s)	105, 1085, 1120, 1251, 1358, 1753, 1754, 1841
BseMI	GCAATG	2 cut(s)	1346, 1667
BseMII	CTCAG	5 cut(s)	42, 93, 156, 973, 1637
BseNI	ACTGG	6 cut(s)	576, 695, 1123, 1363, 1495, 1813
BseRI	GAGGAG	2 cut(s)	124, 127
BseSI	GKGCMC	2 cut(s)	535, 1620
BseXI	GCAGC	1 cut(s)	1518
BseYI	CCCAGC	2 cut(s)	410, 1323
Bsh1236I	CGCG	1 cut(s)	1023
BshFI	GGCC	4 cut(s)	894, 996, 1597, 1660
BshNI	GGYRCC	1 cut(s)	1615
BshVI	ATCGAT	2 cut(s)	33, 126
BsiHKAI	GWGCWC	2 cut(s)	535, 960
BsiSI	CCGG	1 cut(s)	980
BslFI	GGGAC	4 cut(s)	1062, 1136, 1730, 1742
BslI	CCNNNNNNNGG	8 cut(s)	105, 1085, 1120, 1251, 1358, 1753, 1754, 1841
BsmAI	GTCTC	2 cut(s)	456, 1579
BsmFI	GGGAC	4 cut(s)	1062, 1136, 1730, 1742
BsmI	GAATGC	6 cut(s)	1246, 1291, 1548, 1684, 1686, 1764
BsnI	GGCC	4 cut(s)	894, 996, 1597, 1660
Bso31I	GGTCTC	1 cut(s)	456
Bsp1286I	GDGCHC	3 cut(s)	535, 960, 1620
Bsp1407I	TGTACA	4 cut(s)	419, 1102, 1365, 1495
Bsp1720I	GCTNAGC	1 cut(s)	51
Bsp19I	CCATGG	1 cut(s)	538
BspACI	CCGC	3 cut(s)	1460, 1556, 1835
BspANI	GGCC	4 cut(s)	894, 996, 1597, 1660
BspCNI	CTCAG	5 cut(s)	43, 94, 157, 972, 1636
BspDI	ATCGAT	2 cut(s)	33, 126
BspFNI	CGCG	1 cut(s)	1023
BspHI	TCATGA	1 cut(s)	1168
BspLI	GGNNCC	7 cut(s)	62, 306, 867, 1617, 1659, 1730, 1746
BspMAI	CTGCAG	2 cut(s)	281, 834
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	5 cut(s)	797, 860, 873, 1370, 1644
BspQI	GCTCTTC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	1615
BspTNI	GGTCTC	1 cut(s)	456
BsrDI	GCAATG	2 cut(s)	1346, 1667
BsrGI	TGTACA	4 cut(s)	419, 1102, 1365, 1495
BsrI	ACTGG	6 cut(s)	576, 695, 1123, 1363, 1495, 1813
BssECI	CCNNGG	6 cut(s)	308, 538, 610, 765, 1592, 1611
BssT1I	CCWWGG	2 cut(s)	538, 765
Bst2UI	CCWGG	7 cut(s)	309, 449, 1246, 1353, 1545, 1594, 1613
Bst4CI	ACNGT	4 cut(s)	232, 370, 426, 526
Bst6I	CTCTTC	2 cut(s)	19, 454
BstAUI	TGTACA	4 cut(s)	419, 1102, 1365, 1495
BstC8I	GCNNGC	2 cut(s)	1068, 1662
BstDEI	CTNAG	6 cut(s)	51, 102, 165, 262, 959, 1623
BstDSI	CCRYGG	2 cut(s)	538, 610
BstFNI	CGCG	1 cut(s)	1023
BstH2I	RGCGCY	1 cut(s)	977
BstHHI	GCGC	2 cut(s)	976, 1159
BstMAI	GTCTC	2 cut(s)	456, 1579
BstNI	CCWGG	7 cut(s)	309, 449, 1246, 1353, 1545, 1594, 1613
BstNSI	RCATGY	2 cut(s)	1366, 1502
BstSCI	CCNGG	8 cut(s)	307, 447, 979, 1244, 1351, 1543, 1592, 1611
BstSFI	CTRYAG	4 cut(s)	277, 620, 649, 830
BstSLI	GKGCMC	2 cut(s)	535, 1620
BstUI	CGCG	1 cut(s)	1023
BstV1I	GCAGC	1 cut(s)	1518
BstV2I	GAAGAC	2 cut(s)	264, 1595
BstX2I	RGATCY	3 cut(s)	69, 802, 865
BstXI	CCANNNNNNTGG	1 cut(s)	455
BstYI	RGATCY	3 cut(s)	69, 802, 865
Bsu15I	ATCGAT	2 cut(s)	33, 126
BsuRI	GGCC	4 cut(s)	894, 996, 1597, 1660
BsuTUI	ATCGAT	2 cut(s)	33, 126
BtgI	CCRYGG	2 cut(s)	538, 610
BtsI	GCAGTG	1 cut(s)	1166
BtsIMutI	CAGTG	6 cut(s)	366, 422, 569, 1116, 1166, 1263
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	2 cut(s)	1068, 1662
CaiI	CAGNNNCTG	1 cut(s)	1358
CciI	TCATGA	1 cut(s)	1168
CfoI	GCGC	2 cut(s)	976, 1159
Cfr13I	GGNCC	7 cut(s)	61, 445, 614, 692, 1658, 1729, 1744
ClaI	ATCGAT	2 cut(s)	33, 126
CseI	GACGC	1 cut(s)	1012
CsiI	ACCWGGT	1 cut(s)	447
Csp6I	GTAC	8 cut(s)	233, 420, 1076, 1103, 1366, 1488, 1496, 1775
CviAII	CATG	7 cut(s)	341, 539, 1169, 1236, 1363, 1499, 1599
CviQI	GTAC	8 cut(s)	233, 420, 1076, 1103, 1366, 1488, 1496, 1775
DdeI	CTNAG	6 cut(s)	51, 102, 165, 262, 959, 1623
DraI	TTTAAA	3 cut(s)	195, 475, 1032
DraIII	CACNNNGTG	1 cut(s)	611
EaeI	YGGCCR	2 cut(s)	994, 1595
Eam1104I	CTCTTC	2 cut(s)	19, 454
EarI	CTCTTC	2 cut(s)	19, 454
EciI	GGCGGA	1 cut(s)	1824
Ecl136II	GAGCTC	1 cut(s)	958
Eco130I	CCWWGG	2 cut(s)	538, 765
Eco24I	GRGCYC	1 cut(s)	960
Eco31I	GGTCTC	1 cut(s)	456
Eco47I	GGWCC	6 cut(s)	61, 445, 614, 692, 1729, 1744
Eco47III	AGCGCT	1 cut(s)	975
Eco53kI	GAGCTC	1 cut(s)	958
Eco57I	CTGAAG	1 cut(s)	891
EcoICRI	GAGCTC	1 cut(s)	958
EcoO109I	RGGNCCY	3 cut(s)	1658, 1729, 1744
EcoRI	GAATTC	2 cut(s)	836, 966
EcoRII	CCWGG	7 cut(s)	307, 447, 1244, 1351, 1543, 1592, 1611
EcoT14I	CCWWGG	2 cut(s)	538, 765
EcoT22I	ATGCAT	3 cut(s)	1291, 1297, 1686
EcoT38I	GRGCYC	1 cut(s)	960
ErhI	CCWWGG	2 cut(s)	538, 765
FaeI	CATG	7 cut(s)	344, 542, 1172, 1239, 1366, 1502, 1602
FaqI	GGGAC	4 cut(s)	1062, 1136, 1730, 1742
FatI	CATG	7 cut(s)	340, 538, 1168, 1235, 1362, 1498, 1598
FauNDI	CATATG	3 cut(s)	556, 1291, 1720
FbaI	TGATCA	2 cut(s)	492, 1270
Fnu4HI	GCNGC	1 cut(s)	1507
FriOI	GRGCYC	1 cut(s)	960
Fsp4HI	GCNGC	1 cut(s)	1507
FspBI	CTAG	5 cut(s)	267, 825, 890, 971, 1725
FspI	TGCGCA	1 cut(s)	1158
GlaI	GCGC	2 cut(s)	975, 1158
GluI	GCNGC	1 cut(s)	1507
GsaI	CCCAGC	2 cut(s)	414, 1327
GsuI	CTGGAG	1 cut(s)	455
HaeII	RGCGCY	1 cut(s)	977
HaeIII	GGCC	4 cut(s)	894, 996, 1597, 1660
HapII	CCGG	1 cut(s)	980
HgaI	GACGC	1 cut(s)	1012
HhaI	GCGC	2 cut(s)	976, 1159
Hin1II	CATG	7 cut(s)	344, 542, 1172, 1239, 1366, 1502, 1602
Hin6I	GCGC	2 cut(s)	974, 1157
HinP1I	GCGC	2 cut(s)	974, 1157
HincII	GTYRAC	3 cut(s)	45, 1471, 1769
HindII	GTYRAC	3 cut(s)	45, 1471, 1769
HindIII	AAGCTT	2 cut(s)	1177, 1643
HinfI	GANTC	4 cut(s)	813, 1381, 1427, 1706
HpaI	GTTAAC	1 cut(s)	1471
HpaII	CCGG	1 cut(s)	980
HphI	GGTGA	4 cut(s)	305, 754, 995, 1456
Hpy188III	TCNNGA	6 cut(s)	434, 490, 909, 961, 1169, 1222
Hpy99I	CGWCG	1 cut(s)	1443
HpyAV	CCTTC	5 cut(s)	296, 1221, 1413, 1735, 1848
HpyCH4III	ACNGT	4 cut(s)	232, 370, 426, 526
HpyCH4IV	ACGT	3 cut(s)	200, 858, 1777
HpyF3I	CTNAG	6 cut(s)	51, 102, 165, 262, 959, 1623
HpySE526I	ACGT	3 cut(s)	200, 858, 1777
Hsp92II	CATG	7 cut(s)	344, 542, 1172, 1239, 1366, 1502, 1602
HspAI	GCGC	2 cut(s)	974, 1157
Ksp22I	TGATCA	2 cut(s)	492, 1270
KspAI	GTTAAC	1 cut(s)	1471
LguI	GCTCTTC	1 cut(s)	19
LmnI	GCTCC	3 cut(s)	118, 436, 1075
Lsp1109I	GCAGC	1 cut(s)	1518
LweI	GCATC	2 cut(s)	687, 1673
MabI	ACCWGGT	1 cut(s)	447
MaeI	CTAG	5 cut(s)	267, 825, 890, 971, 1725
MaeII	ACGT	3 cut(s)	200, 858, 1777
MaeIII	GTNAC	3 cut(s)	790, 901, 1024
MflI	RGATCY	3 cut(s)	69, 802, 865
MhlI	GDGCHC	3 cut(s)	535, 960, 1620
MlsI	TGGCCA	2 cut(s)	996, 1597
MluCI	AATT	6 cut(s)	656, 670, 751, 770, 836, 966
MluNI	TGGCCA	2 cut(s)	996, 1597
MlyI	GAGTC	2 cut(s)	1390, 1436
MmeI	TCCRAC	2 cut(s)	436, 1797
Mox20I	TGGCCA	2 cut(s)	996, 1597
Mph1103I	ATGCAT	3 cut(s)	1291, 1297, 1686
MroXI	GAANNNNTTC	1 cut(s)	1684
MscI	TGGCCA	2 cut(s)	996, 1597
MseI	TTAA	8 cut(s)	194, 351, 399, 474, 717, 927, 1031, 1470
MslI	CAYNNNNRTG	1 cut(s)	1314
Msp20I	TGGCCA	2 cut(s)	996, 1597
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	980
MspR9I	CCNGG	8 cut(s)	309, 449, 981, 1246, 1353, 1545, 1594, 1613
Mva1269I	GAATGC	6 cut(s)	1246, 1291, 1548, 1684, 1686, 1764
MvaI	CCWGG	7 cut(s)	309, 449, 1246, 1353, 1545, 1594, 1613
MvnI	CGCG	1 cut(s)	1023
NciI	CCSGG	1 cut(s)	981
NcoI	CCATGG	1 cut(s)	538
NdeI	CATATG	3 cut(s)	556, 1291, 1720
NlaIII	CATG	7 cut(s)	344, 542, 1172, 1239, 1366, 1502, 1602
NlaIV	GGNNCC	7 cut(s)	62, 306, 867, 1617, 1659, 1730, 1746
NmuCI	GTSAC	1 cut(s)	1024
NsbI	TGCGCA	1 cut(s)	1158
NsiI	ATGCAT	3 cut(s)	1291, 1297, 1686
NspI	RCATGY	2 cut(s)	1366, 1502
PagI	TCATGA	1 cut(s)	1168
PaqCI	CACCTGC	1 cut(s)	430
PciI	ACATGT	1 cut(s)	1498
PciSI	GCTCTTC	1 cut(s)	19
PctI	GAATGC	6 cut(s)	1246, 1291, 1548, 1684, 1686, 1764
PdmI	GAANNNNTTC	1 cut(s)	1684
PfeI	GAWTC	2 cut(s)	813, 1706
PflFI	GACNNNGTC	2 cut(s)	449, 1252
PflMI	CCANNNNNTGG	3 cut(s)	1085, 1251, 1358
PkrI	GCNGC	1 cut(s)	1508
PleI	GAGTC	2 cut(s)	1389, 1435
PpsI	GAGTC	2 cut(s)	1389, 1435
PpuMI	RGGWCCY	2 cut(s)	1729, 1744
PscI	ACATGT	1 cut(s)	1498
Psp124BI	GAGCTC	1 cut(s)	960
Psp5II	RGGWCCY	2 cut(s)	1729, 1744
Psp6I	CCWGG	7 cut(s)	307, 447, 1244, 1351, 1543, 1592, 1611
PspFI	CCCAGC	2 cut(s)	410, 1323
PspGI	CCWGG	7 cut(s)	307, 447, 1244, 1351, 1543, 1592, 1611
PspN4I	GGNNCC	7 cut(s)	62, 306, 867, 1617, 1659, 1730, 1746
PspPI	GGNCC	7 cut(s)	61, 445, 614, 692, 1658, 1729, 1744
PspPPI	RGGWCCY	2 cut(s)	1729, 1744
PstI	CTGCAG	2 cut(s)	281, 834
PstNI	CAGNNNCTG	1 cut(s)	1358
PsuI	RGATCY	3 cut(s)	69, 802, 865
PsyI	GACNNNGTC	2 cut(s)	449, 1252
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	8 cut(s)	234, 421, 1077, 1104, 1367, 1489, 1497, 1776
RsaNI	GTAC	8 cut(s)	233, 420, 1076, 1103, 1366, 1488, 1496, 1775
RseI	CAYNNNNRTG	1 cut(s)	1314
SacI	GAGCTC	1 cut(s)	960
SapI	GCTCTTC	1 cut(s)	19
SaqAI	TTAA	8 cut(s)	194, 351, 399, 474, 717, 927, 1031, 1470
SatI	GCNGC	1 cut(s)	1507
Sau96I	GGNCC	7 cut(s)	61, 445, 614, 692, 1658, 1729, 1744
ScaI	AGTACT	2 cut(s)	234, 1489
SchI	GAGTC	2 cut(s)	1390, 1436
ScrFI	CCNGG	8 cut(s)	309, 449, 981, 1246, 1353, 1545, 1594, 1613
SduI	GDGCHC	3 cut(s)	535, 960, 1620
SexAI	ACCWGGT	1 cut(s)	447
SfaNI	GCATC	2 cut(s)	687, 1673
SfcI	CTRYAG	4 cut(s)	277, 620, 649, 830
SinI	GGWCC	6 cut(s)	61, 445, 614, 692, 1729, 1744
SmiMI	CAYNNNNRTG	1 cut(s)	1314
SmlI	CTYRAG	2 cut(s)	1215, 1523
SmoI	CTYRAG	2 cut(s)	1215, 1523
Sse9I	AATT	6 cut(s)	656, 670, 751, 770, 836, 966
SsiI	CCGC	3 cut(s)	1460, 1556, 1835
SspI	AATATT	1 cut(s)	1149
SspMI	CTAG	5 cut(s)	267, 825, 890, 971, 1725
SstI	GAGCTC	1 cut(s)	960
StyD4I	CCNGG	8 cut(s)	307, 447, 979, 1244, 1351, 1543, 1592, 1611
StyI	CCWWGG	2 cut(s)	538, 765
TaaI	ACNGT	4 cut(s)	232, 370, 426, 526
TaiI	ACGT	3 cut(s)	203, 861, 1780
TaqI	TCGA	2 cut(s)	33, 126
TasI	AATT	6 cut(s)	656, 670, 751, 770, 836, 966
TatI	WGTACW	6 cut(s)	232, 419, 1102, 1365, 1487, 1495
TfiI	GAWTC	2 cut(s)	813, 1706
Tru1I	TTAA	8 cut(s)	194, 351, 399, 474, 717, 927, 1031, 1470
Tru9I	TTAA	8 cut(s)	194, 351, 399, 474, 717, 927, 1031, 1470
TscAI	CASTG	6 cut(s)	373, 429, 576, 1123, 1166, 1263
TseFI	GTSAC	1 cut(s)	1024
TseI	GCWGC	1 cut(s)	1506
Tsp45I	GTSAC	1 cut(s)	1024
TspGWI	ACGGA	1 cut(s)	599
TspRI	CASTG	6 cut(s)	373, 429, 576, 1123, 1166, 1263
Tth111I	GACNNNGTC	2 cut(s)	449, 1252
Van91I	CCANNNNNTGG	3 cut(s)	1085, 1251, 1358
VneI	GTGCAC	1 cut(s)	531
VpaK11BI	GGWCC	6 cut(s)	61, 445, 614, 692, 1729, 1744
XapI	RAATTY	5 cut(s)	656, 751, 770, 836, 966
XceI	RCATGY	2 cut(s)	1366, 1502
XmnI	GAANNNNTTC	1 cut(s)	1684
XspI	CTAG	5 cut(s)	267, 825, 890, 971, 1725
ZrmI	AGTACT	2 cut(s)	234, 1489
Zsp2I	ATGCAT	3 cut(s)	1291, 1297, 1686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.